Wall clock time and date at job start Tue Mar 31 2020 10:39:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47473 * 2 1 4 4 C 1.52998 * 109.47038 * 300.00156 * 3 2 1 5 5 C 1.52991 * 109.47248 * 180.02562 * 3 2 1 6 6 N 1.46501 * 109.46968 * 59.99676 * 3 2 1 7 7 C 1.46505 * 119.99602 * 70.15494 * 6 3 2 8 8 C 1.50694 * 109.47324 * 83.35697 * 7 6 3 9 9 H 1.08003 * 119.99939 * 0.02562 * 8 7 6 10 10 C 1.37880 * 120.00147 * 179.97438 * 8 7 6 11 11 N 1.31516 * 119.99700 * 179.97438 * 10 8 7 12 12 Si 1.86797 * 119.99825 * 359.97438 * 10 8 7 13 13 H 1.48496 * 109.47174 * 90.00152 * 12 10 8 14 14 H 1.48500 * 109.47100 * 209.99856 * 12 10 8 15 15 H 1.48504 * 109.47242 * 330.00274 * 12 10 8 16 16 C 1.34771 * 120.00383 * 250.15141 * 6 3 2 17 17 O 1.21639 * 119.99989 * 6.56378 * 16 6 3 18 18 C 1.47180 * 120.00375 * 186.56149 * 16 6 3 19 19 C 1.35977 * 123.45327 * 14.33808 * 18 16 6 20 20 S 1.70441 * 110.84430 * 179.97438 * 19 18 16 21 21 C 1.75505 * 92.45665 * 359.97438 * 20 19 18 22 22 Cl 1.73601 * 124.71740 * 180.02562 * 21 20 19 23 23 C 1.32891 * 110.56085 * 359.73979 * 21 20 19 24 24 H 1.09003 * 109.47372 * 59.99904 * 1 2 3 25 25 H 1.09000 * 109.47115 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.47244 * 300.00109 * 1 2 3 27 27 H 1.09005 * 109.47244 * 239.99891 * 2 1 3 28 28 H 1.09002 * 109.46949 * 120.00423 * 2 1 3 29 29 H 1.09002 * 109.47205 * 171.09759 * 4 3 2 30 30 H 1.09001 * 109.47373 * 291.10481 * 4 3 2 31 31 H 1.09006 * 109.47150 * 51.10205 * 4 3 2 32 32 H 1.09003 * 109.47440 * 300.00000 * 5 3 2 33 33 H 1.09000 * 109.47168 * 60.00325 * 5 3 2 34 34 H 1.09001 * 109.46939 * 179.97438 * 5 3 2 35 35 H 1.08999 * 109.47113 * 323.35461 * 7 6 3 36 36 H 1.08996 * 109.46909 * 203.36031 * 7 6 3 37 37 H 0.96998 * 119.99177 * 180.02562 * 11 10 8 38 38 H 1.07994 * 124.57793 * 359.97438 * 19 18 16 39 39 H 1.07998 * 123.47403 * 180.22638 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.5301 2.1637 -1.2492 5 6 3.5700 1.4424 -0.0006 6 7 1.5517 2.1331 1.1962 7 6 2.0789 1.7749 2.5153 8 6 3.3740 2.5072 2.7545 9 1 3.7651 3.1732 1.9996 10 6 4.0591 2.3278 3.9375 11 7 5.1897 2.9665 4.1460 12 14 3.3815 1.1774 5.2440 13 1 3.9090 -0.1924 5.0193 14 1 3.7980 1.6540 6.5874 15 1 1.8988 1.1562 5.1640 16 6 0.6176 3.0980 1.0831 17 8 0.0933 3.3137 0.0069 18 6 0.2318 3.8906 2.2617 19 6 0.9493 3.9146 3.4165 20 16 0.2139 4.9354 4.5663 21 6 -1.0962 5.3478 3.4738 22 17 -2.4045 6.4217 3.8598 23 6 -0.9441 4.7285 2.3079 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8900 27 1 1.8934 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.7578 3.2270 -1.1733 30 1 2.0173 1.7499 -2.1321 31 1 0.4517 2.0282 -1.3322 32 1 3.9337 0.9284 0.8891 33 1 3.9329 0.9287 -0.8909 34 1 3.9333 2.4701 -0.0011 35 1 2.2562 0.7002 2.5561 36 1 1.3569 2.0533 3.2829 37 1 5.6718 2.8400 4.9781 38 1 1.8619 3.3615 3.5826 39 1 -1.6310 4.8372 1.4816 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000189919464.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:39:23 Heat of formation + Delta-G solvation = 22.464204 kcal Electronic energy + Delta-G solvation = -23276.487142 eV Core-core repulsion = 19952.339948 eV Total energy + Delta-G solvation = -3324.147194 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 315.080 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.22591 -37.36323 -36.46597 -35.92697 -34.00882 -32.33756 -30.18907 -28.81820 -28.32939 -26.56123 -24.38941 -23.18192 -22.47391 -21.46581 -19.23923 -18.16728 -17.30210 -17.20950 -16.00643 -15.49681 -14.99981 -14.67308 -14.17669 -13.90398 -13.69480 -13.51752 -13.22039 -12.95146 -12.90007 -12.66215 -12.32414 -12.06695 -11.61979 -11.56709 -11.41429 -11.31577 -11.11800 -11.04820 -10.97672 -10.78942 -10.66981 -10.52117 -10.26791 -10.17167 -10.08570 -9.62944 -8.99550 -8.51832 -8.43561 -8.12001 -7.74199 -6.46805 -4.48752 1.16394 1.39581 2.18626 2.28487 2.45558 3.01002 3.09105 3.12960 3.75687 3.92519 4.03192 4.80661 5.14856 5.34791 5.44922 5.51739 5.52558 5.77008 5.84562 5.93523 5.99872 6.03268 6.09399 6.24612 6.26494 6.37957 6.43697 6.47170 6.48323 6.54273 6.61205 6.64783 6.76300 6.96086 7.09194 7.17077 7.42135 7.97812 8.28727 8.64777 8.90556 9.09072 10.63347 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.010953 B = 0.006910 C = 0.004777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2555.699230 B = 4051.248212 C = 5859.588871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.128 4.128 3 C 0.174 3.826 4 C -0.134 4.134 5 C -0.146 4.146 6 N -0.571 5.571 7 C 0.184 3.816 8 C -0.542 4.542 9 H 0.090 0.910 10 C 0.079 3.921 11 N -0.871 5.871 12 Si 0.852 3.148 13 H -0.267 1.267 14 H -0.277 1.277 15 H -0.258 1.258 16 C 0.582 3.418 17 O -0.556 6.556 18 C -0.172 4.172 19 C -0.191 4.191 20 S 0.187 5.813 21 C -0.189 4.189 22 Cl -0.031 7.031 23 C -0.063 4.063 24 H 0.059 0.941 25 H 0.044 0.956 26 H 0.052 0.948 27 H 0.066 0.934 28 H 0.064 0.936 29 H 0.060 0.940 30 H 0.033 0.967 31 H 0.084 0.916 32 H 0.077 0.923 33 H 0.047 0.953 34 H 0.061 0.939 35 H 0.031 0.969 36 H 0.051 0.949 37 H 0.271 0.729 38 H 0.245 0.755 39 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.722 -1.056 -1.154 8.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.166 4.166 3 C 0.090 3.910 4 C -0.191 4.191 5 C -0.204 4.204 6 N -0.301 5.301 7 C 0.062 3.938 8 C -0.580 4.580 9 H 0.108 0.892 10 C -0.127 4.127 11 N -0.506 5.506 12 Si 0.677 3.323 13 H -0.192 1.192 14 H -0.202 1.202 15 H -0.182 1.182 16 C 0.370 3.630 17 O -0.438 6.438 18 C -0.188 4.188 19 C -0.328 4.328 20 S 0.450 5.550 21 C -0.331 4.331 22 Cl -0.003 7.003 23 C -0.095 4.095 24 H 0.078 0.922 25 H 0.063 0.937 26 H 0.071 0.929 27 H 0.084 0.916 28 H 0.083 0.917 29 H 0.079 0.921 30 H 0.051 0.949 31 H 0.102 0.898 32 H 0.096 0.904 33 H 0.066 0.934 34 H 0.080 0.920 35 H 0.049 0.951 36 H 0.068 0.932 37 H 0.082 0.918 38 H 0.260 0.740 39 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -8.588 -0.406 -0.066 8.598 hybrid contribution -0.478 -0.840 -0.493 1.085 sum -9.066 -1.246 -0.559 9.168 Atomic orbital electron populations 1.21756 0.95894 1.00359 1.02418 1.21896 0.96262 0.96575 1.01911 1.20422 0.94321 0.91187 0.85118 1.22340 1.02570 1.00154 0.94001 1.22153 0.93499 1.02989 1.01730 1.47717 1.38528 1.35493 1.08324 1.20456 0.95504 0.96923 0.80909 1.21455 1.04689 1.27861 1.04020 0.89211 1.24961 0.94612 0.95108 0.98029 1.69871 1.14476 1.40407 1.25890 0.87195 0.80621 0.82412 0.82076 1.19196 1.20193 1.18246 1.17407 0.79240 0.79439 0.86909 1.90736 1.55705 1.69837 1.27542 1.20044 0.97680 1.04870 0.96194 1.28675 1.06632 1.01009 0.96478 1.83187 1.14199 1.41425 1.16181 1.24991 0.99751 1.07337 1.01014 1.98324 1.45480 1.62602 1.93910 1.21085 0.97179 0.94820 0.96368 0.92250 0.93672 0.92883 0.91551 0.91748 0.92141 0.94855 0.89791 0.90438 0.93438 0.92018 0.95070 0.93195 0.91836 0.74042 0.82886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.19 9.32 37.16 0.35 -1.84 16 2 C -0.13 -1.96 4.98 -26.73 -0.13 -2.09 16 3 C 0.17 3.05 0.79 -131.82 -0.10 2.95 16 4 C -0.13 -2.31 6.76 37.16 0.25 -2.06 16 5 C -0.15 -2.59 7.32 37.15 0.27 -2.32 16 6 N -0.57 -11.15 1.77 -161.53 -0.29 -11.44 16 7 C 0.18 3.77 3.09 -5.19 -0.02 3.75 16 8 C -0.54 -12.66 5.93 -34.44 -0.20 -12.86 16 9 H 0.09 2.37 7.03 -52.48 -0.37 2.00 16 10 C 0.08 1.92 5.19 -17.82 -0.09 1.83 16 11 N -0.87 -22.93 13.96 55.43 0.77 -22.16 16 12 Si 0.85 17.89 27.17 -169.99 -4.62 13.27 16 13 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 14 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 15 H -0.26 -5.10 6.54 56.52 0.37 -4.73 16 16 C 0.58 11.77 6.82 -12.63 -0.09 11.68 16 17 O -0.56 -11.63 12.41 5.24 0.07 -11.56 16 18 C -0.17 -3.31 5.77 -104.63 -0.60 -3.91 16 19 C -0.19 -3.66 8.47 29.92 0.25 -3.41 16 20 S 0.19 3.02 23.02 -107.50 -2.47 0.55 16 21 C -0.19 -2.99 7.01 28.89 0.20 -2.79 16 22 Cl -0.03 -0.43 29.27 -51.86 -1.52 -1.94 16 23 C -0.06 -1.07 10.07 -38.98 -0.39 -1.47 16 24 H 0.06 0.89 6.24 -51.93 -0.32 0.57 16 25 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 26 H 0.05 0.88 7.25 -51.93 -0.38 0.50 16 27 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.06 1.00 7.11 -51.93 -0.37 0.63 16 29 H 0.06 1.17 6.96 -51.93 -0.36 0.81 16 30 H 0.03 0.50 8.12 -51.93 -0.42 0.08 16 31 H 0.08 1.50 4.33 -51.93 -0.22 1.28 16 32 H 0.08 1.49 6.72 -51.93 -0.35 1.14 16 33 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.06 1.21 7.39 -51.93 -0.38 0.83 16 35 H 0.03 0.63 6.43 -51.93 -0.33 0.30 16 36 H 0.05 1.03 3.68 -51.93 -0.19 0.84 16 37 H 0.27 6.74 8.31 -40.82 -0.34 6.40 16 38 H 0.24 5.12 2.27 -52.49 -0.12 5.00 16 39 H 0.15 2.47 8.06 -52.49 -0.42 2.05 16 LS Contribution 324.19 15.07 4.89 4.89 Total: -1.00 -24.82 324.19 -8.16 -32.98 By element: Atomic # 1 Polarization: 12.64 SS G_CDS: -4.68 Total: 7.96 kcal Atomic # 6 Polarization: -12.24 SS G_CDS: -0.31 Total: -12.54 kcal Atomic # 7 Polarization: -34.08 SS G_CDS: 0.49 Total: -33.59 kcal Atomic # 8 Polarization: -11.63 SS G_CDS: 0.07 Total: -11.56 kcal Atomic # 14 Polarization: 17.89 SS G_CDS: -4.62 Total: 13.27 kcal Atomic # 16 Polarization: 3.02 SS G_CDS: -2.47 Total: 0.55 kcal Atomic # 17 Polarization: -0.43 SS G_CDS: -1.52 Total: -1.94 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -24.82 -8.16 -32.98 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189919464.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.444 kcal (2) G-P(sol) polarization free energy of solvation -24.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.980 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds