Wall clock time and date at job start Tue Mar 31 2020 10:39:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47473 * 2 1 4 4 C 1.52998 * 109.47038 * 300.00156 * 3 2 1 5 5 C 1.52991 * 109.47248 * 180.02562 * 3 2 1 6 6 N 1.46501 * 109.46968 * 59.99676 * 3 2 1 7 7 C 1.46505 * 119.99602 * 70.15494 * 6 3 2 8 8 C 1.50694 * 109.47324 * 83.35697 * 7 6 3 9 9 H 1.08003 * 119.99939 * 0.02562 * 8 7 6 10 10 C 1.37880 * 120.00147 * 179.97438 * 8 7 6 11 11 N 1.31516 * 119.99700 * 179.97438 * 10 8 7 12 12 Si 1.86797 * 119.99825 * 359.97438 * 10 8 7 13 13 H 1.48496 * 109.47174 * 90.00152 * 12 10 8 14 14 H 1.48500 * 109.47100 * 209.99856 * 12 10 8 15 15 H 1.48504 * 109.47242 * 330.00274 * 12 10 8 16 16 C 1.34771 * 120.00383 * 250.15141 * 6 3 2 17 17 O 1.21639 * 119.99989 * 6.56378 * 16 6 3 18 18 C 1.47180 * 120.00375 * 186.56149 * 16 6 3 19 19 C 1.35977 * 123.45327 * 14.33808 * 18 16 6 20 20 S 1.70441 * 110.84430 * 179.97438 * 19 18 16 21 21 C 1.75505 * 92.45665 * 359.97438 * 20 19 18 22 22 Cl 1.73601 * 124.71740 * 180.02562 * 21 20 19 23 23 C 1.32891 * 110.56085 * 359.73979 * 21 20 19 24 24 H 1.09003 * 109.47372 * 59.99904 * 1 2 3 25 25 H 1.09000 * 109.47115 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.47244 * 300.00109 * 1 2 3 27 27 H 1.09005 * 109.47244 * 239.99891 * 2 1 3 28 28 H 1.09002 * 109.46949 * 120.00423 * 2 1 3 29 29 H 1.09002 * 109.47205 * 171.09759 * 4 3 2 30 30 H 1.09001 * 109.47373 * 291.10481 * 4 3 2 31 31 H 1.09006 * 109.47150 * 51.10205 * 4 3 2 32 32 H 1.09003 * 109.47440 * 300.00000 * 5 3 2 33 33 H 1.09000 * 109.47168 * 60.00325 * 5 3 2 34 34 H 1.09001 * 109.46939 * 179.97438 * 5 3 2 35 35 H 1.08999 * 109.47113 * 323.35461 * 7 6 3 36 36 H 1.08996 * 109.46909 * 203.36031 * 7 6 3 37 37 H 0.96998 * 119.99177 * 180.02562 * 11 10 8 38 38 H 1.07994 * 124.57793 * 359.97438 * 19 18 16 39 39 H 1.07998 * 123.47403 * 180.22638 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.5301 2.1637 -1.2492 5 6 3.5700 1.4424 -0.0006 6 7 1.5517 2.1331 1.1962 7 6 2.0789 1.7749 2.5153 8 6 3.3740 2.5072 2.7545 9 1 3.7651 3.1732 1.9996 10 6 4.0591 2.3278 3.9375 11 7 5.1897 2.9665 4.1460 12 14 3.3815 1.1774 5.2440 13 1 3.9090 -0.1924 5.0193 14 1 3.7980 1.6540 6.5874 15 1 1.8988 1.1562 5.1640 16 6 0.6176 3.0980 1.0831 17 8 0.0933 3.3137 0.0069 18 6 0.2318 3.8906 2.2617 19 6 0.9493 3.9146 3.4165 20 16 0.2139 4.9354 4.5663 21 6 -1.0962 5.3478 3.4738 22 17 -2.4045 6.4217 3.8598 23 6 -0.9441 4.7285 2.3079 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8900 27 1 1.8934 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.7578 3.2270 -1.1733 30 1 2.0173 1.7499 -2.1321 31 1 0.4517 2.0282 -1.3322 32 1 3.9337 0.9284 0.8891 33 1 3.9329 0.9287 -0.8909 34 1 3.9333 2.4701 -0.0011 35 1 2.2562 0.7002 2.5561 36 1 1.3569 2.0533 3.2829 37 1 5.6718 2.8400 4.9781 38 1 1.8619 3.3615 3.5826 39 1 -1.6310 4.8372 1.4816 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000189919464.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:39:23 Heat of formation + Delta-G solvation = 11.162584 kcal Electronic energy + Delta-G solvation = -23276.977217 eV Core-core repulsion = 19952.339948 eV Total energy + Delta-G solvation = -3324.637269 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 315.080 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.73814 -38.71239 -37.79117 -37.42271 -35.58378 -34.05059 -31.48833 -30.30863 -29.96963 -28.02539 -25.89440 -24.49182 -24.17551 -22.86034 -20.65266 -19.62052 -19.09539 -18.70195 -17.51782 -16.97023 -16.50530 -16.19869 -15.71877 -15.27796 -15.07337 -14.98567 -14.63878 -14.58051 -14.36720 -14.02337 -13.72696 -13.63230 -13.08190 -12.93481 -12.86069 -12.69293 -12.58919 -12.51870 -12.40167 -12.25373 -12.04344 -11.85065 -11.79916 -11.66892 -11.49386 -11.31623 -10.84828 -10.02094 -9.80480 -9.53012 -9.26982 -8.34400 -6.39606 -0.26210 0.07853 0.81131 0.86039 1.14825 1.34919 1.39730 1.45372 2.26473 2.27731 2.38638 2.96552 3.73951 4.00969 4.08886 4.11876 4.19659 4.40851 4.45062 4.56484 4.60172 4.68627 4.77343 4.80586 4.89637 4.94759 5.02458 5.07747 5.09012 5.11262 5.17691 5.31678 5.35586 5.39928 5.52056 5.64592 5.91498 6.16395 6.62519 6.72902 7.18433 7.37632 8.79478 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.010953 B = 0.006910 C = 0.004777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2555.699230 B = 4051.248212 C = 5859.588871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.123 4.123 3 C 0.164 3.836 4 C -0.123 4.123 5 C -0.137 4.137 6 N -0.573 5.573 7 C 0.192 3.808 8 C -0.526 4.526 9 H 0.047 0.953 10 C 0.035 3.965 11 N -0.922 5.922 12 Si 0.904 3.096 13 H -0.262 1.262 14 H -0.278 1.278 15 H -0.236 1.236 16 C 0.573 3.427 17 O -0.568 6.568 18 C -0.183 4.183 19 C -0.220 4.220 20 S 0.235 5.765 21 C -0.181 4.181 22 Cl -0.004 7.004 23 C -0.073 4.073 24 H 0.056 0.944 25 H 0.068 0.932 26 H 0.031 0.969 27 H 0.092 0.908 28 H 0.062 0.938 29 H 0.031 0.969 30 H 0.058 0.942 31 H 0.079 0.921 32 H 0.059 0.941 33 H 0.077 0.923 34 H 0.031 0.969 35 H 0.041 0.959 36 H 0.058 0.942 37 H 0.271 0.729 38 H 0.226 0.774 39 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.632 -2.128 -0.808 10.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.161 4.161 3 C 0.080 3.920 4 C -0.180 4.180 5 C -0.194 4.194 6 N -0.302 5.302 7 C 0.070 3.930 8 C -0.564 4.564 9 H 0.065 0.935 10 C -0.166 4.166 11 N -0.560 5.560 12 Si 0.726 3.274 13 H -0.187 1.187 14 H -0.203 1.203 15 H -0.159 1.159 16 C 0.362 3.638 17 O -0.452 6.452 18 C -0.199 4.199 19 C -0.357 4.357 20 S 0.498 5.502 21 C -0.323 4.323 22 Cl 0.024 6.976 23 C -0.104 4.104 24 H 0.075 0.925 25 H 0.087 0.913 26 H 0.050 0.950 27 H 0.110 0.890 28 H 0.081 0.919 29 H 0.050 0.950 30 H 0.077 0.923 31 H 0.098 0.902 32 H 0.078 0.922 33 H 0.096 0.904 34 H 0.050 0.950 35 H 0.059 0.941 36 H 0.075 0.925 37 H 0.081 0.919 38 H 0.241 0.759 39 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -10.514 -1.485 0.270 10.622 hybrid contribution 0.076 -0.378 -0.650 0.756 sum -10.438 -1.863 -0.380 10.610 Atomic orbital electron populations 1.21702 0.95413 1.01540 1.01218 1.21873 0.96587 0.94589 1.03088 1.20684 0.93955 0.92812 0.84537 1.22192 1.02515 0.98437 0.94856 1.22047 0.93956 1.01146 1.02285 1.47781 1.38272 1.35619 1.08557 1.20296 0.94098 0.96786 0.81811 1.21358 1.05535 1.26805 1.02732 0.93500 1.25600 0.94614 0.96452 0.99974 1.70004 1.16370 1.42846 1.26731 0.86351 0.81322 0.80435 0.79282 1.18668 1.20313 1.15912 1.17676 0.79328 0.79566 0.87240 1.90719 1.56242 1.70191 1.27998 1.20164 0.98607 1.05291 0.95848 1.28362 1.06816 1.02705 0.97859 1.82947 1.13207 1.39625 1.14374 1.25087 1.00074 1.06689 1.00467 1.98340 1.44065 1.61530 1.93660 1.21083 0.96916 0.95179 0.97248 0.92525 0.91259 0.94984 0.88951 0.91942 0.95007 0.92328 0.90203 0.92235 0.90416 0.95022 0.94148 0.92498 0.91910 0.75879 0.82138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.91 9.32 71.98 0.67 -3.24 16 2 C -0.12 -3.50 4.98 30.59 0.15 -3.34 16 3 C 0.16 5.67 0.79 3.60 0.00 5.67 16 4 C -0.12 -4.18 6.76 71.98 0.49 -3.69 16 5 C -0.14 -4.88 7.32 71.98 0.53 -4.35 16 6 N -0.57 -22.52 1.77 -783.20 -1.38 -23.91 16 7 C 0.19 7.89 3.09 85.63 0.26 8.15 16 8 C -0.53 -25.33 5.93 25.60 0.15 -25.18 16 9 H 0.05 2.63 7.03 -2.91 -0.02 2.61 16 10 C 0.04 1.75 5.19 84.66 0.44 2.19 16 11 N -0.92 -50.21 13.96 21.45 0.30 -49.91 16 12 Si 0.90 36.40 27.17 68.60 1.86 38.26 16 13 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 14 H -0.28 -11.21 7.11 99.48 0.71 -10.50 16 15 H -0.24 -8.58 6.54 99.48 0.65 -7.93 16 16 C 0.57 23.39 6.82 86.59 0.59 23.98 16 17 O -0.57 -23.93 12.41 -4.16 -0.05 -23.98 16 18 C -0.18 -7.00 5.77 -19.87 -0.11 -7.11 16 19 C -0.22 -8.38 8.47 67.29 0.57 -7.81 16 20 S 0.23 7.22 23.02 -56.49 -1.30 5.92 16 21 C -0.18 -5.38 7.01 66.64 0.47 -4.92 16 22 Cl 0.00 -0.11 29.27 -2.72 -0.08 -0.19 16 23 C -0.07 -2.42 10.07 22.68 0.23 -2.19 16 24 H 0.06 1.59 6.24 -2.39 -0.01 1.57 16 25 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 26 H 0.03 1.00 7.25 -2.38 -0.02 0.99 16 27 H 0.09 2.16 8.14 -2.38 -0.02 2.14 16 28 H 0.06 1.81 7.11 -2.39 -0.02 1.79 16 29 H 0.03 1.24 6.96 -2.39 -0.02 1.22 16 30 H 0.06 1.66 8.12 -2.39 -0.02 1.64 16 31 H 0.08 2.79 4.33 -2.38 -0.01 2.78 16 32 H 0.06 2.32 6.72 -2.39 -0.02 2.30 16 33 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 34 H 0.03 1.28 7.39 -2.39 -0.02 1.27 16 35 H 0.04 1.59 6.43 -2.39 -0.02 1.58 16 36 H 0.06 2.32 3.68 -2.39 -0.01 2.31 16 37 H 0.27 13.91 8.31 -92.71 -0.77 13.14 16 38 H 0.23 9.54 2.27 -2.91 -0.01 9.53 16 39 H 0.16 5.01 8.06 -2.91 -0.02 4.99 16 Total: -1.00 -54.88 324.19 4.82 -50.06 By element: Atomic # 1 Polarization: 24.56 SS G_CDS: 1.03 Total: 25.59 kcal Atomic # 6 Polarization: -26.29 SS G_CDS: 4.44 Total: -21.85 kcal Atomic # 7 Polarization: -72.73 SS G_CDS: -1.08 Total: -73.82 kcal Atomic # 8 Polarization: -23.93 SS G_CDS: -0.05 Total: -23.98 kcal Atomic # 14 Polarization: 36.40 SS G_CDS: 1.86 Total: 38.26 kcal Atomic # 16 Polarization: 7.22 SS G_CDS: -1.30 Total: 5.92 kcal Atomic # 17 Polarization: -0.11 SS G_CDS: -0.08 Total: -0.19 kcal Total: -54.88 4.82 -50.06 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189919464.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.224 kcal (2) G-P(sol) polarization free energy of solvation -54.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.062 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds