Wall clock time and date at job start Tue Mar 31 2020 11:07:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.08998 * 109.47515 * 2 1 4 4 C 1.50703 * 109.47280 * 120.00284 * 2 1 3 5 5 C 1.38256 * 119.96782 * 95.62683 * 4 2 1 6 6 C 1.38216 * 120.07070 * 179.72883 * 5 4 2 7 7 C 1.38403 * 119.99956 * 0.54508 * 6 5 4 8 8 F 1.35097 * 120.03547 * 179.74598 * 7 6 5 9 9 C 1.38647 * 119.92999 * 359.72956 * 7 6 5 10 10 F 1.35100 * 120.03919 * 180.02562 * 9 7 6 11 11 C 1.38216 * 119.96400 * 275.90329 * 4 2 1 12 12 N 1.46501 * 109.47139 * 240.00014 * 2 1 3 13 13 C 1.46506 * 120.00018 * 320.77212 * 12 2 1 14 14 C 1.34772 * 120.00419 * 140.77362 * 12 2 1 15 15 O 1.21280 * 119.99819 * 0.02562 * 14 12 2 16 16 C 1.50703 * 120.00410 * 180.02562 * 14 12 2 17 17 S 1.80999 * 109.47313 * 179.97438 * 16 14 12 18 18 C 1.76193 * 100.00063 * 179.97438 * 17 16 14 19 19 H 1.08005 * 120.00217 * 0.02562 * 18 17 16 20 20 C 1.38802 * 120.00071 * 179.97438 * 18 17 16 21 21 N 1.31626 * 119.99960 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 120.00003 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47027 * 90.00159 * 22 20 18 24 24 H 1.48502 * 109.47049 * 210.00202 * 22 20 18 25 25 H 1.48502 * 109.47011 * 330.00344 * 22 20 18 26 26 H 1.09003 * 109.47018 * 300.00314 * 1 2 3 27 27 H 1.09004 * 109.47118 * 59.99716 * 1 2 3 28 28 H 1.08998 * 109.47515 * 179.97438 * 1 2 3 29 29 H 1.08004 * 119.96038 * 0.02562 * 5 4 2 30 30 H 1.08003 * 119.99634 * 180.27304 * 6 5 4 31 31 H 1.07994 * 119.99589 * 0.02562 * 11 4 2 32 32 H 1.09005 * 109.46925 * 84.43689 * 13 12 2 33 33 H 1.09007 * 109.46912 * 324.44174 * 13 12 2 34 34 H 1.08994 * 109.47619 * 204.44149 * 13 12 2 35 35 H 1.09001 * 109.46729 * 299.99682 * 16 14 12 36 36 H 1.08996 * 109.47171 * 59.99616 * 16 14 12 37 37 H 0.97000 * 119.99952 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 6 2.3732 -2.0487 1.1644 6 6 2.8395 -2.7010 2.2902 7 6 2.9549 -2.0174 3.4881 8 9 3.4057 -2.6555 4.5901 9 6 2.6076 -0.6768 3.5557 10 9 2.7198 -0.0072 4.7237 11 6 2.1463 -0.0250 2.4252 12 7 2.0183 -0.6906 -1.1962 13 6 1.3358 -1.8946 -1.6768 14 6 3.0953 -0.2184 -1.8545 15 8 3.6606 0.7780 -1.4564 16 6 3.5973 -0.9285 -3.0853 17 16 5.0444 -0.0577 -3.7363 18 6 5.4120 -1.0733 -5.1283 19 1 4.7995 -1.9364 -5.3440 20 6 6.4881 -0.7637 -5.9485 21 7 7.2343 0.2884 -5.6860 22 14 6.8774 -1.8400 -7.4248 23 1 6.1451 -1.3337 -8.6133 24 1 8.3379 -1.8053 -7.6913 25 1 6.4587 -3.2367 -7.1432 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 2.2796 -2.5837 0.2308 30 1 3.1097 -3.7453 2.2361 31 1 1.8750 1.0191 2.4767 32 1 0.4915 -1.6078 -2.3039 33 1 0.9762 -2.4728 -0.8255 34 1 2.0317 -2.4990 -2.2585 35 1 3.8736 -1.9509 -2.8275 36 1 2.8124 -0.9439 -3.8414 37 1 7.9861 0.5051 -6.2594 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000192550165.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:07:00 Heat of formation + Delta-G solvation = -92.676843 kcal Electronic energy + Delta-G solvation = -23351.461990 eV Core-core repulsion = 19470.525226 eV Total energy + Delta-G solvation = -3880.936764 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.085 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.65024 -48.72739 -40.42087 -38.73369 -35.95960 -32.80945 -32.45976 -31.01387 -29.57893 -28.64406 -27.21448 -25.52612 -23.96953 -23.33912 -21.59814 -19.36426 -18.19082 -17.80135 -17.36436 -17.25690 -16.56849 -16.47703 -16.07300 -15.53214 -15.14133 -14.83241 -14.70991 -14.56759 -14.23284 -14.09101 -13.61804 -13.32832 -13.18521 -12.96466 -12.86811 -12.71199 -12.33760 -12.21480 -12.07943 -11.68265 -11.50784 -11.26088 -11.08835 -11.05502 -10.78888 -9.84493 -9.46632 -9.32417 -9.09611 -8.88035 -8.71305 -8.26711 -6.54028 -6.24604 -3.95712 0.65255 0.74395 2.76672 2.94032 3.10018 3.20078 3.22933 3.27909 3.51662 3.56587 4.09873 4.17063 4.23071 4.37875 4.66169 4.74506 4.85156 4.93794 4.99227 5.06933 5.10649 5.26043 5.26791 5.48150 5.49818 5.52783 5.58699 5.62547 5.68388 5.78939 5.82982 5.86708 6.06076 6.07136 6.48640 6.53246 7.38985 7.56366 8.31831 8.44658 9.20705 10.82779 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.019858 B = 0.002978 C = 0.002860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1409.690157 B = 9398.965276 C = 9788.289529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.179 3.821 3 H 0.112 0.888 4 C -0.069 4.069 5 C -0.096 4.096 6 C -0.122 4.122 7 C 0.061 3.939 8 F -0.131 7.131 9 C 0.070 3.930 10 F -0.130 7.130 11 C -0.117 4.117 12 N -0.620 5.620 13 C 0.069 3.931 14 C 0.535 3.465 15 O -0.511 6.511 16 C -0.150 4.150 17 S -0.061 6.061 18 C -0.536 4.536 19 H 0.073 0.927 20 C 0.074 3.926 21 N -0.867 5.867 22 Si 0.918 3.082 23 H -0.277 1.277 24 H -0.282 1.282 25 H -0.272 1.272 26 H 0.071 0.929 27 H 0.070 0.930 28 H 0.064 0.936 29 H 0.146 0.854 30 H 0.146 0.854 31 H 0.147 0.853 32 H 0.059 0.941 33 H 0.071 0.929 34 H 0.081 0.919 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.995 -5.972 14.502 22.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.075 3.925 3 H 0.130 0.870 4 C -0.070 4.070 5 C -0.114 4.114 6 C -0.141 4.141 7 C 0.041 3.959 8 F -0.110 7.110 9 C 0.050 3.950 10 F -0.108 7.108 11 C -0.136 4.136 12 N -0.357 5.357 13 C -0.074 4.074 14 C 0.323 3.677 15 O -0.384 6.384 16 C -0.301 4.301 17 S 0.166 5.834 18 C -0.684 4.684 19 H 0.091 0.909 20 C -0.135 4.135 21 N -0.502 5.502 22 Si 0.745 3.255 23 H -0.203 1.203 24 H -0.207 1.207 25 H -0.197 1.197 26 H 0.090 0.910 27 H 0.089 0.911 28 H 0.083 0.917 29 H 0.163 0.837 30 H 0.164 0.836 31 H 0.165 0.835 32 H 0.078 0.922 33 H 0.089 0.911 34 H 0.100 0.900 35 H 0.108 0.892 36 H 0.109 0.891 37 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -14.969 -4.376 15.111 21.716 hybrid contribution -0.221 -1.944 -0.939 2.170 sum -15.190 -6.320 14.172 21.715 Atomic orbital electron populations 1.22101 0.92920 1.03001 1.03186 1.19829 0.94326 0.97283 0.81038 0.87008 1.20249 0.97846 0.94165 0.94776 1.21227 0.97528 0.94132 0.98551 1.21108 1.00914 1.01370 0.90675 1.17705 1.03616 0.89838 0.84758 1.91522 1.86791 1.81448 1.51212 1.17603 1.04976 0.89286 0.83173 1.91529 1.93967 1.79933 1.45388 1.20864 1.00928 1.01301 0.90532 1.47928 1.30992 1.28987 1.27763 1.21965 0.98314 0.87132 0.99989 1.20408 0.78720 0.84410 0.84173 1.90705 1.55622 1.25096 1.66969 1.23562 1.05577 1.03778 0.97138 1.85438 1.28286 1.37188 1.32516 1.22847 1.17657 1.14762 1.13146 0.90929 1.24991 0.95047 0.95574 0.97927 1.70013 1.17139 1.25157 1.37896 0.86172 0.77725 0.80145 0.81483 1.20260 1.20744 1.19681 0.91018 0.91134 0.91734 0.83683 0.83613 0.83492 0.92202 0.91062 0.90045 0.89189 0.89129 0.92149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 8.79 37.15 0.33 -0.80 16 2 C 0.18 1.90 2.78 -69.08 -0.19 1.71 16 3 H 0.11 1.40 7.15 -51.93 -0.37 1.03 16 4 C -0.07 -0.72 5.06 -104.62 -0.53 -1.25 16 5 C -0.10 -0.95 8.87 -39.58 -0.35 -1.30 16 6 C -0.12 -1.19 10.02 -39.53 -0.40 -1.59 16 7 C 0.06 0.70 7.31 -39.37 -0.29 0.41 16 8 F -0.13 -1.62 17.18 2.25 0.04 -1.58 16 9 C 0.07 0.81 7.31 -39.37 -0.29 0.52 16 10 F -0.13 -1.61 17.18 2.25 0.04 -1.57 16 11 C -0.12 -1.22 9.70 -39.53 -0.38 -1.60 16 12 N -0.62 -7.60 2.30 -175.26 -0.40 -8.01 16 13 C 0.07 0.58 7.83 59.85 0.47 1.05 16 14 C 0.53 9.42 7.69 -10.99 -0.08 9.33 16 15 O -0.51 -11.08 15.31 5.56 0.09 -10.99 16 16 C -0.15 -2.87 4.63 36.01 0.17 -2.70 16 17 S -0.06 -1.61 20.57 -107.50 -2.21 -3.83 16 18 C -0.54 -14.91 9.50 30.94 0.29 -14.61 16 19 H 0.07 1.90 7.80 -52.48 -0.41 1.49 16 20 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 21 N -0.87 -25.81 13.22 55.49 0.73 -25.08 16 22 Si 0.92 21.01 29.55 -169.99 -5.02 15.99 16 23 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 24 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 25 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 26 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 27 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.06 0.40 6.99 -51.93 -0.36 0.04 16 29 H 0.15 1.24 4.71 -52.48 -0.25 1.00 16 30 H 0.15 1.10 8.06 -52.48 -0.42 0.68 16 31 H 0.15 1.25 8.06 -52.49 -0.42 0.83 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.07 0.43 5.59 -51.92 -0.29 0.14 16 34 H 0.08 0.71 6.24 -51.93 -0.32 0.38 16 35 H 0.09 1.57 7.42 -51.92 -0.39 1.19 16 36 H 0.09 1.59 8.11 -51.92 -0.42 1.17 16 37 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 334.50 15.07 5.04 5.04 Total: -1.00 -33.97 334.50 -7.11 -41.08 By element: Atomic # 1 Polarization: 1.84 SS G_CDS: -4.06 Total: -2.22 kcal Atomic # 6 Polarization: -7.49 SS G_CDS: -1.35 Total: -8.84 kcal Atomic # 7 Polarization: -33.41 SS G_CDS: 0.33 Total: -33.08 kcal Atomic # 8 Polarization: -11.08 SS G_CDS: 0.09 Total: -10.99 kcal Atomic # 9 Polarization: -3.23 SS G_CDS: 0.08 Total: -3.15 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -33.97 -7.11 -41.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000192550165.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.594 kcal (2) G-P(sol) polarization free energy of solvation -33.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds