Wall clock time and date at job start Tue Mar 31 2020 11:06:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.08998 * 109.47515 * 2 1 4 4 C 1.50703 * 109.47280 * 120.00284 * 2 1 3 5 5 C 1.38256 * 119.96782 * 95.62683 * 4 2 1 6 6 C 1.38216 * 120.07070 * 179.72883 * 5 4 2 7 7 C 1.38403 * 119.99956 * 0.54508 * 6 5 4 8 8 F 1.35097 * 120.03547 * 179.74598 * 7 6 5 9 9 C 1.38647 * 119.92999 * 359.72956 * 7 6 5 10 10 F 1.35100 * 120.03919 * 180.02562 * 9 7 6 11 11 C 1.38216 * 119.96400 * 275.90329 * 4 2 1 12 12 N 1.46501 * 109.47139 * 240.00014 * 2 1 3 13 13 C 1.46506 * 120.00018 * 320.77212 * 12 2 1 14 14 C 1.34772 * 120.00419 * 140.77362 * 12 2 1 15 15 O 1.21280 * 119.99819 * 0.02562 * 14 12 2 16 16 C 1.50703 * 120.00410 * 180.02562 * 14 12 2 17 17 S 1.80999 * 109.47313 * 179.97438 * 16 14 12 18 18 C 1.76193 * 100.00063 * 179.97438 * 17 16 14 19 19 H 1.08005 * 120.00217 * 0.02562 * 18 17 16 20 20 C 1.38802 * 120.00071 * 179.97438 * 18 17 16 21 21 N 1.31626 * 119.99960 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 120.00003 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47027 * 90.00159 * 22 20 18 24 24 H 1.48502 * 109.47049 * 210.00202 * 22 20 18 25 25 H 1.48502 * 109.47011 * 330.00344 * 22 20 18 26 26 H 1.09003 * 109.47018 * 300.00314 * 1 2 3 27 27 H 1.09004 * 109.47118 * 59.99716 * 1 2 3 28 28 H 1.08998 * 109.47515 * 179.97438 * 1 2 3 29 29 H 1.08004 * 119.96038 * 0.02562 * 5 4 2 30 30 H 1.08003 * 119.99634 * 180.27304 * 6 5 4 31 31 H 1.07994 * 119.99589 * 0.02562 * 11 4 2 32 32 H 1.09005 * 109.46925 * 84.43689 * 13 12 2 33 33 H 1.09007 * 109.46912 * 324.44174 * 13 12 2 34 34 H 1.08994 * 109.47619 * 204.44149 * 13 12 2 35 35 H 1.09001 * 109.46729 * 299.99682 * 16 14 12 36 36 H 1.08996 * 109.47171 * 59.99616 * 16 14 12 37 37 H 0.97000 * 119.99952 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 6 2.3732 -2.0487 1.1644 6 6 2.8395 -2.7010 2.2902 7 6 2.9549 -2.0174 3.4881 8 9 3.4057 -2.6555 4.5901 9 6 2.6076 -0.6768 3.5557 10 9 2.7198 -0.0072 4.7237 11 6 2.1463 -0.0250 2.4252 12 7 2.0183 -0.6906 -1.1962 13 6 1.3358 -1.8946 -1.6768 14 6 3.0953 -0.2184 -1.8545 15 8 3.6606 0.7780 -1.4564 16 6 3.5973 -0.9285 -3.0853 17 16 5.0444 -0.0577 -3.7363 18 6 5.4120 -1.0733 -5.1283 19 1 4.7995 -1.9364 -5.3440 20 6 6.4881 -0.7637 -5.9485 21 7 7.2343 0.2884 -5.6860 22 14 6.8774 -1.8400 -7.4248 23 1 6.1451 -1.3337 -8.6133 24 1 8.3379 -1.8053 -7.6913 25 1 6.4587 -3.2367 -7.1432 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 2.2796 -2.5837 0.2308 30 1 3.1097 -3.7453 2.2361 31 1 1.8750 1.0191 2.4767 32 1 0.4915 -1.6078 -2.3039 33 1 0.9762 -2.4728 -0.8255 34 1 2.0317 -2.4990 -2.2585 35 1 3.8736 -1.9509 -2.8275 36 1 2.8124 -0.9439 -3.8414 37 1 7.9861 0.5051 -6.2594 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000192550165.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:59 Heat of formation + Delta-G solvation = -112.718133 kcal Electronic energy + Delta-G solvation = -23352.331046 eV Core-core repulsion = 19470.525226 eV Total energy + Delta-G solvation = -3881.805820 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.085 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -50.56253 -49.64686 -41.44477 -39.80673 -37.05333 -34.56522 -33.76148 -31.88551 -30.60897 -29.73983 -28.03614 -27.64119 -24.82411 -24.14973 -22.58913 -20.54566 -19.58843 -19.06042 -18.47019 -18.15004 -17.72008 -17.39780 -17.07160 -16.86535 -16.70441 -16.07373 -15.82413 -15.72229 -15.56538 -15.02367 -14.65154 -14.49743 -14.31614 -14.05344 -13.77554 -13.71422 -13.43900 -13.14961 -13.10444 -13.02907 -12.87966 -12.56423 -12.50900 -12.27340 -12.02626 -11.70086 -11.12409 -10.87266 -10.22881 -10.13263 -9.81279 -9.67170 -8.64824 -8.32766 -6.10603 -0.20006 -0.05626 1.27501 1.43942 1.47749 1.57533 1.58935 2.05206 2.28854 2.30656 2.72647 3.01751 3.23886 3.29128 3.41363 3.58675 3.74681 3.94260 4.06198 4.18088 4.24150 4.26727 4.34348 4.51308 4.61088 4.67963 4.71826 4.78945 4.85757 4.91508 4.95825 5.07456 5.23804 5.28055 5.43890 5.61026 5.66864 6.21451 6.26239 7.08844 7.15479 8.76325 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.019858 B = 0.002978 C = 0.002860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1409.690157 B = 9398.965276 C = 9788.289529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.178 3.822 3 H 0.088 0.912 4 C -0.074 4.074 5 C -0.097 4.097 6 C -0.115 4.115 7 C 0.045 3.955 8 F -0.140 7.140 9 C 0.053 3.947 10 F -0.139 7.139 11 C -0.118 4.118 12 N -0.604 5.604 13 C 0.056 3.944 14 C 0.534 3.466 15 O -0.563 6.563 16 C -0.123 4.123 17 S -0.157 6.157 18 C -0.543 4.543 19 H 0.085 0.915 20 C 0.013 3.987 21 N -0.912 5.912 22 Si 0.997 3.003 23 H -0.268 1.268 24 H -0.281 1.281 25 H -0.256 1.256 26 H 0.085 0.915 27 H 0.070 0.930 28 H 0.084 0.916 29 H 0.163 0.837 30 H 0.170 0.830 31 H 0.160 0.840 32 H 0.080 0.920 33 H 0.103 0.897 34 H 0.083 0.917 35 H 0.111 0.889 36 H 0.110 0.890 37 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.081 -8.497 13.788 24.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.074 3.926 3 H 0.106 0.894 4 C -0.075 4.075 5 C -0.115 4.115 6 C -0.134 4.134 7 C 0.025 3.975 8 F -0.119 7.119 9 C 0.033 3.967 10 F -0.118 7.118 11 C -0.137 4.137 12 N -0.338 5.338 13 C -0.085 4.085 14 C 0.321 3.679 15 O -0.441 6.441 16 C -0.274 4.274 17 S 0.070 5.930 18 C -0.691 4.691 19 H 0.103 0.897 20 C -0.192 4.192 21 N -0.549 5.549 22 Si 0.819 3.181 23 H -0.194 1.194 24 H -0.206 1.206 25 H -0.180 1.180 26 H 0.104 0.896 27 H 0.089 0.911 28 H 0.103 0.897 29 H 0.180 0.820 30 H 0.188 0.812 31 H 0.177 0.823 32 H 0.098 0.902 33 H 0.121 0.879 34 H 0.101 0.899 35 H 0.129 0.871 36 H 0.128 0.872 37 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -17.117 -6.939 14.419 23.432 hybrid contribution 0.308 -1.177 -0.620 1.366 sum -16.809 -8.116 13.799 23.212 Atomic orbital electron populations 1.22084 0.89824 1.04556 1.03935 1.19951 0.96515 0.95855 0.80244 0.89429 1.20292 0.98090 0.94614 0.94512 1.21458 0.96912 0.93881 0.99199 1.21369 0.99851 1.02422 0.89750 1.17976 1.04298 0.89991 0.85223 1.91496 1.87013 1.81564 1.51777 1.17824 1.05965 0.89657 0.83260 1.91498 1.94163 1.80177 1.45974 1.21003 1.00542 1.01946 0.90222 1.47870 1.29070 1.29567 1.27246 1.22347 0.98679 0.85709 1.01792 1.20171 0.79852 0.83812 0.84025 1.90693 1.57804 1.27366 1.68280 1.23387 1.02263 1.03577 0.98181 1.85648 1.33391 1.40203 1.33763 1.23195 1.17928 1.14856 1.13108 0.89712 1.26118 0.94780 0.96967 1.01303 1.70188 1.17896 1.27337 1.39467 0.84969 0.77419 0.78583 0.77115 1.19360 1.20593 1.17967 0.89634 0.91105 0.89709 0.81965 0.81203 0.82270 0.90168 0.87874 0.89871 0.87068 0.87173 0.92094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 8.79 71.98 0.63 -1.04 16 2 C 0.18 3.45 2.78 44.24 0.12 3.57 16 3 H 0.09 2.18 7.15 -2.39 -0.02 2.16 16 4 C -0.07 -1.41 5.06 -19.86 -0.10 -1.51 16 5 C -0.10 -1.64 8.87 22.27 0.20 -1.44 16 6 C -0.12 -2.00 10.02 22.30 0.22 -1.77 16 7 C 0.05 0.99 7.31 22.41 0.16 1.16 16 8 F -0.14 -3.38 17.18 44.97 0.77 -2.60 16 9 C 0.05 1.21 7.31 22.41 0.16 1.38 16 10 F -0.14 -3.50 17.18 44.97 0.77 -2.73 16 11 C -0.12 -2.35 9.70 22.31 0.22 -2.14 16 12 N -0.60 -13.36 2.30 -826.78 -1.90 -15.27 16 13 C 0.06 0.71 7.83 127.77 1.00 1.71 16 14 C 0.53 18.39 7.69 87.66 0.67 19.06 16 15 O -0.56 -25.08 15.31 -3.03 -0.05 -25.13 16 16 C -0.12 -4.56 4.63 71.24 0.33 -4.23 16 17 S -0.16 -8.52 20.57 -56.49 -1.16 -9.68 16 18 C -0.54 -30.16 9.50 67.95 0.65 -29.52 16 19 H 0.08 4.32 7.80 -2.91 -0.02 4.29 16 20 C 0.01 0.72 5.49 84.86 0.47 1.19 16 21 N -0.91 -55.51 13.22 21.65 0.29 -55.23 16 22 Si 1.00 42.66 29.55 68.60 2.03 44.68 16 23 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 24 H -0.28 -11.81 7.11 99.48 0.71 -11.11 16 25 H -0.26 -10.16 7.11 99.48 0.71 -9.45 16 26 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 27 H 0.07 0.84 8.14 -2.38 -0.02 0.83 16 28 H 0.08 0.65 6.99 -2.39 -0.02 0.64 16 29 H 0.16 2.12 4.71 -2.91 -0.01 2.11 16 30 H 0.17 2.04 8.06 -2.91 -0.02 2.02 16 31 H 0.16 2.64 8.06 -2.91 -0.02 2.62 16 32 H 0.08 0.79 8.14 -2.38 -0.02 0.77 16 33 H 0.10 0.71 5.59 -2.38 -0.01 0.69 16 34 H 0.08 1.08 6.24 -2.39 -0.01 1.07 16 35 H 0.11 3.63 7.42 -2.39 -0.02 3.62 16 36 H 0.11 3.64 8.11 -2.40 -0.02 3.62 16 37 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 Total: -1.00 -77.28 334.50 6.59 -70.69 By element: Atomic # 1 Polarization: 7.74 SS G_CDS: 1.11 Total: 8.85 kcal Atomic # 6 Polarization: -18.32 SS G_CDS: 4.74 Total: -13.58 kcal Atomic # 7 Polarization: -68.88 SS G_CDS: -1.62 Total: -70.50 kcal Atomic # 8 Polarization: -25.08 SS G_CDS: -0.05 Total: -25.13 kcal Atomic # 9 Polarization: -6.88 SS G_CDS: 1.55 Total: -5.34 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 2.03 Total: 44.68 kcal Atomic # 16 Polarization: -8.52 SS G_CDS: -1.16 Total: -9.68 kcal Total: -77.28 6.59 -70.69 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000192550165.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.028 kcal (2) G-P(sol) polarization free energy of solvation -77.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds