Wall clock time and date at job start Tue Mar 31 2020 11:07:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.46424 * 2 1 4 4 C 1.50694 * 109.47192 * 240.00697 * 2 1 3 5 5 C 1.38261 * 119.96288 * 292.39457 * 4 2 1 6 6 C 1.38213 * 120.06947 * 180.02562 * 5 4 2 7 7 C 1.38412 * 120.00319 * 359.97438 * 6 5 4 8 8 F 1.35097 * 120.03655 * 180.02562 * 7 6 5 9 9 C 1.38647 * 119.92566 * 0.02562 * 7 6 5 10 10 F 1.35103 * 120.03527 * 179.97438 * 9 7 6 11 11 C 1.38211 * 119.96985 * 112.11905 * 4 2 1 12 12 N 1.46500 * 109.47394 * 120.00046 * 2 1 3 13 13 C 1.46497 * 119.99520 * 54.10404 * 12 2 1 14 14 C 1.34774 * 120.00134 * 234.10465 * 12 2 1 15 15 O 1.21278 * 119.99828 * 359.97438 * 14 12 2 16 16 C 1.50697 * 119.99799 * 179.97438 * 14 12 2 17 17 S 1.81000 * 109.47145 * 180.02562 * 16 14 12 18 18 C 1.76196 * 100.00060 * 180.02562 * 17 16 14 19 19 H 1.07999 * 120.00137 * 359.97438 * 18 17 16 20 20 C 1.38804 * 120.00017 * 180.02562 * 18 17 16 21 21 N 1.31628 * 119.99586 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 120.00254 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.47134 * 89.99533 * 22 20 18 24 24 H 1.48497 * 109.47612 * 210.00029 * 22 20 18 25 25 H 1.48501 * 109.47037 * 330.00091 * 22 20 18 26 26 H 1.09006 * 109.47572 * 299.99315 * 1 2 3 27 27 H 1.09002 * 109.47723 * 59.99782 * 1 2 3 28 28 H 1.09003 * 109.47006 * 179.97438 * 1 2 3 29 29 H 1.07997 * 119.96714 * 359.97293 * 5 4 2 30 30 H 1.08005 * 119.99463 * 179.97438 * 6 5 4 31 31 H 1.07999 * 119.99526 * 359.97438 * 11 4 2 32 32 H 1.09005 * 109.47056 * 95.13434 * 13 12 2 33 33 H 1.09002 * 109.47292 * 215.12912 * 13 12 2 34 34 H 1.09003 * 109.47565 * 335.13202 * 13 12 2 35 35 H 1.08999 * 109.47645 * 300.00372 * 16 14 12 36 36 H 1.09007 * 109.47184 * 60.00199 * 16 14 12 37 37 H 0.97008 * 119.99397 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7102 -1.2305 5 6 1.8323 -2.0709 -1.3725 6 6 2.2925 -2.7246 -2.4999 7 6 2.9541 -2.0170 -3.4886 8 9 3.4038 -2.6553 -4.5911 9 6 3.1547 -0.6526 -3.3462 10 9 3.8006 0.0402 -4.3096 11 6 2.6875 0.0002 -2.2186 12 7 2.0184 -0.6906 1.1961 13 6 1.5612 -2.0499 1.4950 14 6 2.8882 -0.0754 2.0215 15 8 3.2670 1.0498 1.7738 16 6 3.3901 -0.7856 3.2522 17 16 4.5341 0.2941 4.1476 18 6 4.9533 -0.7571 5.4981 19 1 4.5204 -1.7440 5.5689 20 6 5.8390 -0.3163 6.4717 21 7 6.3662 0.8867 6.3857 22 14 6.2829 -1.4304 7.9038 23 1 7.4704 -2.2472 7.5460 24 1 6.5927 -0.6028 9.0973 25 1 5.1385 -2.3270 8.2067 26 1 -0.3634 0.5137 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.3165 -2.6237 -0.6012 30 1 2.1359 -3.7876 -2.6094 31 1 2.8389 1.0638 -2.1087 32 1 2.2815 -2.7694 1.1055 33 1 1.4711 -2.1740 2.5742 34 1 0.5909 -2.2180 1.0277 35 1 2.5473 -1.0356 3.8967 36 1 3.9068 -1.6996 2.9590 37 1 6.9855 1.1946 7.0659 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000192550180.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:07:02 Heat of formation + Delta-G solvation = -94.199755 kcal Electronic energy + Delta-G solvation = -23288.900520 eV Core-core repulsion = 19407.897717 eV Total energy + Delta-G solvation = -3881.002803 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.085 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.68890 -48.76457 -40.41415 -38.79470 -35.93660 -32.75817 -32.45263 -31.17628 -29.56264 -28.65568 -27.19677 -25.51891 -23.99160 -23.44295 -21.59555 -19.38056 -18.17954 -17.82844 -17.39553 -17.32126 -16.55529 -16.52424 -15.85168 -15.60585 -15.17559 -14.84941 -14.82513 -14.69566 -14.23129 -14.10452 -13.66024 -13.33676 -13.25449 -12.95889 -12.76003 -12.70033 -12.36762 -12.17693 -12.02052 -11.72532 -11.56792 -11.22058 -11.08421 -11.04532 -10.78269 -9.83983 -9.50239 -9.36207 -9.08863 -8.91899 -8.71101 -8.26225 -6.53227 -6.24016 -3.94963 0.57384 0.69245 2.74402 2.94802 3.10458 3.20678 3.24953 3.28709 3.49452 3.56875 4.04127 4.16243 4.18216 4.31350 4.65966 4.70682 4.79653 4.89768 5.00167 5.06291 5.11249 5.27679 5.31779 5.44770 5.46494 5.49432 5.59046 5.60012 5.69862 5.70947 5.83528 5.90002 6.06906 6.08887 6.43211 6.51985 7.39686 7.57135 8.32601 8.45102 9.21329 10.83380 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.019969 B = 0.002887 C = 0.002824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1401.847156 B = 9696.628712 C = 9913.358243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.176 3.824 3 H 0.115 0.885 4 C -0.071 4.071 5 C -0.098 4.098 6 C -0.125 4.125 7 C 0.063 3.937 8 F -0.131 7.131 9 C 0.070 3.930 10 F -0.128 7.128 11 C -0.111 4.111 12 N -0.617 5.617 13 C 0.070 3.930 14 C 0.536 3.464 15 O -0.513 6.513 16 C -0.149 4.149 17 S -0.061 6.061 18 C -0.536 4.536 19 H 0.073 0.927 20 C 0.074 3.926 21 N -0.867 5.867 22 Si 0.919 3.081 23 H -0.277 1.277 24 H -0.282 1.282 25 H -0.272 1.272 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.062 0.938 29 H 0.146 0.854 30 H 0.146 0.854 31 H 0.149 0.851 32 H 0.058 0.942 33 H 0.077 0.923 34 H 0.075 0.925 35 H 0.091 0.909 36 H 0.090 0.910 37 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.828 -7.816 -17.043 23.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.072 3.928 3 H 0.132 0.868 4 C -0.072 4.072 5 C -0.116 4.116 6 C -0.144 4.144 7 C 0.043 3.957 8 F -0.109 7.109 9 C 0.049 3.951 10 F -0.107 7.107 11 C -0.130 4.130 12 N -0.353 5.353 13 C -0.073 4.073 14 C 0.324 3.676 15 O -0.387 6.387 16 C -0.300 4.300 17 S 0.165 5.835 18 C -0.684 4.684 19 H 0.091 0.909 20 C -0.136 4.136 21 N -0.502 5.502 22 Si 0.745 3.255 23 H -0.203 1.203 24 H -0.207 1.207 25 H -0.197 1.197 26 H 0.089 0.911 27 H 0.089 0.911 28 H 0.081 0.919 29 H 0.163 0.837 30 H 0.164 0.836 31 H 0.167 0.833 32 H 0.076 0.924 33 H 0.096 0.904 34 H 0.093 0.907 35 H 0.109 0.891 36 H 0.108 0.892 37 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -13.099 -5.997 -17.384 22.578 hybrid contribution 0.171 -2.168 0.742 2.298 sum -12.928 -8.165 -16.642 22.600 Atomic orbital electron populations 1.22159 0.93466 1.02711 1.03201 1.19877 0.94321 0.97646 0.80980 0.86751 1.20157 0.97283 0.94137 0.95652 1.21266 0.99242 0.93995 0.97099 1.21080 0.99055 1.01112 0.93108 1.17727 1.02195 0.89313 0.86450 1.91526 1.87240 1.81547 1.50612 1.17651 0.99727 0.88580 0.89095 1.91540 1.78963 1.78818 1.61369 1.21041 0.98347 1.01768 0.91888 1.47902 1.46811 1.16438 1.24168 1.21969 0.99658 0.83101 1.02556 1.20396 0.77272 0.86193 0.83698 1.90692 1.56034 1.18517 1.73444 1.23554 1.04608 1.04544 0.97278 1.85414 1.52291 1.20352 1.25416 1.22848 1.32167 1.03255 1.10109 0.90931 1.24992 0.95081 0.95534 0.97951 1.70019 1.28740 1.16873 1.34588 0.86168 0.78843 0.79875 0.80617 1.20259 1.20747 1.19682 0.91142 0.91062 0.91914 0.83677 0.83610 0.83308 0.92374 0.90450 0.90692 0.89125 0.89202 0.92162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.21 8.95 37.16 0.33 -0.88 16 2 C 0.18 1.87 2.95 -69.09 -0.20 1.67 16 3 H 0.11 1.45 6.68 -51.93 -0.35 1.10 16 4 C -0.07 -0.70 4.96 -104.63 -0.52 -1.22 16 5 C -0.10 -0.80 8.35 -39.58 -0.33 -1.13 16 6 C -0.12 -1.05 10.02 -39.53 -0.40 -1.44 16 7 C 0.06 0.68 7.31 -39.37 -0.29 0.39 16 8 F -0.13 -1.52 17.18 2.25 0.04 -1.48 16 9 C 0.07 0.80 7.31 -39.37 -0.29 0.51 16 10 F -0.13 -1.62 17.18 2.25 0.04 -1.58 16 11 C -0.11 -1.18 9.65 -39.53 -0.38 -1.56 16 12 N -0.62 -7.74 2.75 -175.27 -0.48 -8.22 16 13 C 0.07 0.61 7.92 59.85 0.47 1.08 16 14 C 0.54 9.58 7.69 -10.99 -0.08 9.49 16 15 O -0.51 -11.13 15.20 5.56 0.08 -11.04 16 16 C -0.15 -2.90 4.77 36.00 0.17 -2.73 16 17 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 18 C -0.54 -14.99 9.50 30.94 0.29 -14.70 16 19 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 20 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 21 N -0.87 -25.89 13.22 55.49 0.73 -25.16 16 22 Si 0.92 21.11 29.55 -169.99 -5.02 16.09 16 23 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 24 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 25 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 26 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.06 0.38 6.21 -51.93 -0.32 0.06 16 29 H 0.15 0.87 4.75 -52.49 -0.25 0.62 16 30 H 0.15 0.86 8.06 -52.48 -0.42 0.44 16 31 H 0.15 1.45 7.96 -52.49 -0.42 1.03 16 32 H 0.06 0.47 7.36 -51.93 -0.38 0.08 16 33 H 0.08 0.69 6.65 -51.93 -0.35 0.34 16 34 H 0.07 0.43 5.14 -51.93 -0.27 0.16 16 35 H 0.09 1.61 7.41 -51.92 -0.38 1.22 16 36 H 0.09 1.63 8.11 -51.91 -0.42 1.21 16 37 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 332.58 15.07 5.01 5.01 Total: -1.00 -34.06 332.58 -7.07 -41.14 By element: Atomic # 1 Polarization: 1.58 SS G_CDS: -3.95 Total: -2.37 kcal Atomic # 6 Polarization: -7.22 SS G_CDS: -1.31 Total: -8.53 kcal Atomic # 7 Polarization: -33.63 SS G_CDS: 0.25 Total: -33.37 kcal Atomic # 8 Polarization: -11.13 SS G_CDS: 0.08 Total: -11.04 kcal Atomic # 9 Polarization: -3.14 SS G_CDS: 0.08 Total: -3.06 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -34.06 -7.07 -41.14 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000192550180.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.064 kcal (2) G-P(sol) polarization free energy of solvation -34.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds