Wall clock time and date at job start Tue Mar 31 2020 11:07:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.46424 * 2 1 4 4 C 1.50694 * 109.47192 * 240.00697 * 2 1 3 5 5 C 1.38261 * 119.96288 * 292.39457 * 4 2 1 6 6 C 1.38213 * 120.06947 * 180.02562 * 5 4 2 7 7 C 1.38412 * 120.00319 * 359.97438 * 6 5 4 8 8 F 1.35097 * 120.03655 * 180.02562 * 7 6 5 9 9 C 1.38647 * 119.92566 * 0.02562 * 7 6 5 10 10 F 1.35103 * 120.03527 * 179.97438 * 9 7 6 11 11 C 1.38211 * 119.96985 * 112.11905 * 4 2 1 12 12 N 1.46500 * 109.47394 * 120.00046 * 2 1 3 13 13 C 1.46497 * 119.99520 * 54.10404 * 12 2 1 14 14 C 1.34774 * 120.00134 * 234.10465 * 12 2 1 15 15 O 1.21278 * 119.99828 * 359.97438 * 14 12 2 16 16 C 1.50697 * 119.99799 * 179.97438 * 14 12 2 17 17 S 1.81000 * 109.47145 * 180.02562 * 16 14 12 18 18 C 1.76196 * 100.00060 * 180.02562 * 17 16 14 19 19 H 1.07999 * 120.00137 * 359.97438 * 18 17 16 20 20 C 1.38804 * 120.00017 * 180.02562 * 18 17 16 21 21 N 1.31628 * 119.99586 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 120.00254 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.47134 * 89.99533 * 22 20 18 24 24 H 1.48497 * 109.47612 * 210.00029 * 22 20 18 25 25 H 1.48501 * 109.47037 * 330.00091 * 22 20 18 26 26 H 1.09006 * 109.47572 * 299.99315 * 1 2 3 27 27 H 1.09002 * 109.47723 * 59.99782 * 1 2 3 28 28 H 1.09003 * 109.47006 * 179.97438 * 1 2 3 29 29 H 1.07997 * 119.96714 * 359.97293 * 5 4 2 30 30 H 1.08005 * 119.99463 * 179.97438 * 6 5 4 31 31 H 1.07999 * 119.99526 * 359.97438 * 11 4 2 32 32 H 1.09005 * 109.47056 * 95.13434 * 13 12 2 33 33 H 1.09002 * 109.47292 * 215.12912 * 13 12 2 34 34 H 1.09003 * 109.47565 * 335.13202 * 13 12 2 35 35 H 1.08999 * 109.47645 * 300.00372 * 16 14 12 36 36 H 1.09007 * 109.47184 * 60.00199 * 16 14 12 37 37 H 0.97008 * 119.99397 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7102 -1.2305 5 6 1.8323 -2.0709 -1.3725 6 6 2.2925 -2.7246 -2.4999 7 6 2.9541 -2.0170 -3.4886 8 9 3.4038 -2.6553 -4.5911 9 6 3.1547 -0.6526 -3.3462 10 9 3.8006 0.0402 -4.3096 11 6 2.6875 0.0002 -2.2186 12 7 2.0184 -0.6906 1.1961 13 6 1.5612 -2.0499 1.4950 14 6 2.8882 -0.0754 2.0215 15 8 3.2670 1.0498 1.7738 16 6 3.3901 -0.7856 3.2522 17 16 4.5341 0.2941 4.1476 18 6 4.9533 -0.7571 5.4981 19 1 4.5204 -1.7440 5.5689 20 6 5.8390 -0.3163 6.4717 21 7 6.3662 0.8867 6.3857 22 14 6.2829 -1.4304 7.9038 23 1 7.4704 -2.2472 7.5460 24 1 6.5927 -0.6028 9.0973 25 1 5.1385 -2.3270 8.2067 26 1 -0.3634 0.5137 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.3165 -2.6237 -0.6012 30 1 2.1359 -3.7876 -2.6094 31 1 2.8389 1.0638 -2.1087 32 1 2.2815 -2.7694 1.1055 33 1 1.4711 -2.1740 2.5742 34 1 0.5909 -2.2180 1.0277 35 1 2.5473 -1.0356 3.8967 36 1 3.9068 -1.6996 2.9590 37 1 6.9855 1.1946 7.0659 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000192550180.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:07:01 Heat of formation + Delta-G solvation = -114.930592 kcal Electronic energy + Delta-G solvation = -23289.799476 eV Core-core repulsion = 19407.897717 eV Total energy + Delta-G solvation = -3881.901759 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.085 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -50.56655 -49.65137 -41.41932 -39.85404 -37.02877 -34.57226 -33.71359 -31.97766 -30.59249 -29.76389 -28.01912 -27.64807 -24.82535 -24.20590 -22.56907 -20.56776 -19.60929 -19.00475 -18.46805 -18.23626 -17.67624 -17.41260 -16.90612 -16.87454 -16.76333 -16.07919 -15.87143 -15.76354 -15.53382 -15.01856 -14.72882 -14.52473 -14.43996 -14.05791 -13.84327 -13.52213 -13.39837 -13.15452 -13.11699 -12.99430 -12.88185 -12.57552 -12.55201 -12.29446 -11.95576 -11.70223 -11.13066 -10.88947 -10.24644 -10.13809 -9.75227 -9.73883 -8.65900 -8.33464 -6.11524 -0.22384 -0.05598 1.27161 1.43571 1.47301 1.56934 1.58337 2.02953 2.28530 2.38678 2.72272 3.00983 3.22306 3.28087 3.39427 3.58425 3.75251 3.96577 4.03050 4.17899 4.20618 4.26625 4.32887 4.50084 4.63049 4.69990 4.73496 4.79245 4.85341 4.91800 4.94237 5.06371 5.24554 5.30918 5.43087 5.58817 5.67362 6.20747 6.25445 7.07995 7.14449 8.75684 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.019969 B = 0.002887 C = 0.002824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1401.847156 B = 9696.628712 C = 9913.358243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.174 3.826 3 H 0.085 0.915 4 C -0.075 4.075 5 C -0.085 4.085 6 C -0.112 4.112 7 C 0.050 3.950 8 F -0.139 7.139 9 C 0.047 3.953 10 F -0.143 7.143 11 C -0.122 4.122 12 N -0.601 5.601 13 C 0.053 3.947 14 C 0.533 3.467 15 O -0.565 6.565 16 C -0.122 4.122 17 S -0.157 6.157 18 C -0.544 4.544 19 H 0.084 0.916 20 C 0.013 3.987 21 N -0.912 5.912 22 Si 0.998 3.002 23 H -0.269 1.269 24 H -0.280 1.280 25 H -0.255 1.255 26 H 0.062 0.938 27 H 0.083 0.917 28 H 0.090 0.910 29 H 0.178 0.822 30 H 0.179 0.821 31 H 0.145 0.855 32 H 0.074 0.926 33 H 0.079 0.921 34 H 0.115 0.885 35 H 0.112 0.888 36 H 0.107 0.893 37 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.939 -11.384 -16.700 25.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.070 3.930 3 H 0.103 0.897 4 C -0.077 4.077 5 C -0.103 4.103 6 C -0.130 4.130 7 C 0.030 3.970 8 F -0.118 7.118 9 C 0.027 3.973 10 F -0.122 7.122 11 C -0.141 4.141 12 N -0.335 5.335 13 C -0.088 4.088 14 C 0.321 3.679 15 O -0.443 6.443 16 C -0.273 4.273 17 S 0.070 5.930 18 C -0.691 4.691 19 H 0.103 0.897 20 C -0.192 4.192 21 N -0.549 5.549 22 Si 0.820 3.180 23 H -0.194 1.194 24 H -0.205 1.205 25 H -0.179 1.179 26 H 0.081 0.919 27 H 0.102 0.898 28 H 0.109 0.891 29 H 0.195 0.805 30 H 0.196 0.804 31 H 0.162 0.838 32 H 0.093 0.907 33 H 0.098 0.902 34 H 0.133 0.867 35 H 0.130 0.870 36 H 0.125 0.875 37 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -15.257 -9.610 -17.075 24.834 hybrid contribution 0.728 -1.094 0.516 1.412 sum -14.530 -10.704 -16.560 24.493 Atomic orbital electron populations 1.22137 0.90519 1.04609 1.03514 1.19973 0.96392 0.96170 0.80417 0.89680 1.20125 0.97540 0.95082 0.94917 1.21593 0.98225 0.92989 0.97517 1.21438 0.97197 1.02490 0.91864 1.18028 1.02910 0.89098 0.86970 1.91502 1.87496 1.81559 1.51233 1.17894 1.00816 0.89271 0.89343 1.91494 1.79450 1.79262 1.61968 1.21092 0.98840 1.01921 0.92233 1.47861 1.44615 1.17683 1.23346 1.22406 1.02107 0.80731 1.03510 1.20172 0.78135 0.85642 0.83992 1.90680 1.58343 1.20694 1.74627 1.23369 1.03307 1.03076 0.97535 1.85629 1.55518 1.24502 1.27364 1.23194 1.32254 1.03520 1.10177 0.89749 1.26132 0.94820 0.97094 1.01154 1.70193 1.29661 1.19157 1.35855 0.84956 0.79033 0.77689 0.76327 1.19438 1.20484 1.17921 0.91892 0.89802 0.89113 0.80463 0.80354 0.83764 0.90720 0.90228 0.86699 0.86996 0.87478 0.92071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 8.95 71.98 0.64 -1.19 16 2 C 0.17 3.43 2.95 44.24 0.13 3.56 16 3 H 0.09 2.22 6.68 -2.39 -0.02 2.21 16 4 C -0.08 -1.34 4.96 -19.87 -0.10 -1.44 16 5 C -0.09 -1.05 8.35 22.27 0.19 -0.86 16 6 C -0.11 -1.46 10.02 22.31 0.22 -1.24 16 7 C 0.05 1.00 7.31 22.41 0.16 1.17 16 8 F -0.14 -3.11 17.18 44.97 0.77 -2.34 16 9 C 0.05 1.08 7.31 22.41 0.16 1.24 16 10 F -0.14 -3.78 17.18 44.97 0.77 -3.01 16 11 C -0.12 -2.59 9.65 22.30 0.22 -2.37 16 12 N -0.60 -13.69 2.75 -826.81 -2.27 -15.96 16 13 C 0.05 0.68 7.92 127.77 1.01 1.69 16 14 C 0.53 18.83 7.69 87.66 0.67 19.50 16 15 O -0.57 -25.49 15.20 -3.02 -0.05 -25.54 16 16 C -0.12 -4.63 4.77 71.23 0.34 -4.29 16 17 S -0.16 -8.62 20.57 -56.49 -1.16 -9.78 16 18 C -0.54 -30.49 9.50 67.96 0.65 -29.84 16 19 H 0.08 4.35 7.80 -2.91 -0.02 4.33 16 20 C 0.01 0.71 5.49 84.86 0.47 1.18 16 21 N -0.91 -55.77 13.22 21.65 0.29 -55.48 16 22 Si 1.00 42.92 29.55 68.60 2.03 44.95 16 23 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 24 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 25 H -0.26 -10.18 7.11 99.48 0.71 -9.48 16 26 H 0.06 0.90 8.14 -2.38 -0.02 0.88 16 27 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.09 0.60 6.21 -2.39 -0.01 0.59 16 29 H 0.18 0.99 4.75 -2.91 -0.01 0.98 16 30 H 0.18 1.19 8.06 -2.91 -0.02 1.17 16 31 H 0.14 3.06 7.96 -2.91 -0.02 3.03 16 32 H 0.07 0.78 7.36 -2.38 -0.02 0.77 16 33 H 0.08 1.05 6.65 -2.39 -0.02 1.04 16 34 H 0.11 0.57 5.14 -2.39 -0.01 0.56 16 35 H 0.11 3.75 7.41 -2.40 -0.02 3.73 16 36 H 0.11 3.68 8.11 -2.39 -0.02 3.66 16 37 H 0.27 15.36 8.31 -92.70 -0.77 14.59 16 Total: -1.00 -78.95 332.58 6.26 -72.69 By element: Atomic # 1 Polarization: 6.26 SS G_CDS: 1.11 Total: 7.37 kcal Atomic # 6 Polarization: -17.66 SS G_CDS: 4.77 Total: -12.90 kcal Atomic # 7 Polarization: -69.46 SS G_CDS: -1.99 Total: -71.45 kcal Atomic # 8 Polarization: -25.49 SS G_CDS: -0.05 Total: -25.54 kcal Atomic # 9 Polarization: -6.89 SS G_CDS: 1.55 Total: -5.34 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 2.03 Total: 44.95 kcal Atomic # 16 Polarization: -8.62 SS G_CDS: -1.16 Total: -9.78 kcal Total: -78.95 6.26 -72.69 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000192550180.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.244 kcal (2) G-P(sol) polarization free energy of solvation -78.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds