Wall clock time and date at job start Tue Mar 31 2020 11:11:35
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 N 1.46504 * 109.46670 * 2 1
4 4 C 1.46499 * 119.99589 * 90.00502 * 3 2 1
5 5 C 1.50701 * 109.47094 * 269.99310 * 4 3 2
6 6 C 1.38425 * 120.02136 * 90.00193 * 5 4 3
7 7 F 1.35101 * 120.01402 * 359.70506 * 6 5 4
8 8 C 1.38476 * 119.97328 * 179.97438 * 6 5 4
9 9 C 1.38207 * 120.02410 * 0.02562 * 8 6 5
10 10 C 1.38207 * 120.05360 * 359.97438 * 9 8 6
11 11 C 1.38412 * 120.02814 * 269.97826 * 5 4 3
12 12 F 1.35096 * 120.01191 * 0.02562 * 11 5 4
13 13 C 1.34772 * 120.00196 * 270.00065 * 3 2 1
14 14 O 1.21280 * 120.00180 * 180.02562 * 13 3 2
15 15 C 1.50701 * 120.00189 * 0.02562 * 13 3 2
16 16 S 1.81000 * 109.47268 * 179.97438 * 15 13 3
17 17 C 1.76201 * 99.99972 * 180.02562 * 16 15 13
18 18 H 1.07997 * 119.99836 * 0.02562 * 17 16 15
19 19 C 1.38798 * 119.99936 * 179.97438 * 17 16 15
20 20 N 1.31629 * 120.00136 * 0.02562 * 19 17 16
21 21 Si 1.86800 * 119.99898 * 180.02562 * 19 17 16
22 22 H 1.48502 * 109.47162 * 60.00519 * 21 19 17
23 23 H 1.48500 * 109.46965 * 180.02562 * 21 19 17
24 24 H 1.48498 * 109.47430 * 300.00524 * 21 19 17
25 25 H 1.09004 * 109.47614 * 299.99565 * 1 2 3
26 26 H 1.09002 * 109.47578 * 59.99927 * 1 2 3
27 27 H 1.09001 * 109.46920 * 179.97438 * 1 2 3
28 28 H 1.09000 * 109.46730 * 240.00523 * 2 1 3
29 29 H 1.08990 * 109.47232 * 120.00058 * 2 1 3
30 30 H 1.09008 * 109.47018 * 149.99924 * 4 3 2
31 31 H 1.09006 * 109.47580 * 29.99738 * 4 3 2
32 32 H 1.08001 * 119.98752 * 179.97438 * 8 6 5
33 33 H 1.08000 * 119.97200 * 180.02562 * 9 8 6
34 34 H 1.07995 * 119.99247 * 179.97438 * 10 9 8
35 35 H 1.08993 * 109.47466 * 300.00522 * 15 13 3
36 36 H 1.09007 * 109.46930 * 59.99966 * 15 13 3
37 37 H 0.97003 * 120.00085 * 179.97438 * 20 19 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0182 1.3813 0.0000
4 6 2.2624 2.0718 1.2688
5 6 1.0066 2.7822 1.7039
6 6 0.0834 2.1300 2.5030
7 9 0.3050 0.8543 2.8885
8 6 -1.0699 2.7840 2.9027
9 6 -1.2998 4.0870 2.5035
10 6 -0.3788 4.7391 1.7056
11 6 0.7755 4.0873 1.3051
12 9 1.6756 4.7250 0.5251
13 6 2.2428 2.0167 -1.1671
14 8 2.6474 3.1600 -1.1671
15 6 1.9911 1.3065 -2.4723
16 16 2.3825 2.4157 -3.8480
17 6 2.0080 1.3602 -5.2082
18 1 1.6523 0.3561 -5.0305
19 6 2.1689 1.8196 -6.5080
20 7 2.6019 3.0436 -6.7246
21 14 1.7711 0.7008 -7.9500
22 1 0.3428 0.2994 -7.8858
23 1 2.0259 1.4234 -9.2221
24 1 2.6288 -0.5099 -7.8886
25 1 -0.3634 0.5138 0.8900
26 1 -0.3634 0.5138 -0.8900
27 1 -0.3633 -1.0277 -0.0005
28 1 1.8932 -0.5138 -0.8901
29 1 1.8933 -0.5138 0.8899
30 1 3.0643 2.7986 1.1384
31 1 2.5506 1.3451 2.0284
32 1 -1.7905 2.2752 3.5259
33 1 -2.1994 4.5963 2.8160
34 1 -0.5596 5.7572 1.3939
35 1 2.6209 0.4189 -2.5303
36 1 0.9430 1.0127 -2.5298
37 1 2.7147 3.3646 -7.6330
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000195392505.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:11:35
Heat of formation + Delta-G solvation = -96.529368 kcal
Electronic energy + Delta-G solvation = -24262.046491 eV
Core-core repulsion = 20380.942669 eV
Total energy + Delta-G solvation = -3881.103822 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 315.085 amu
Computer time = 0.57 seconds
Orbital eigenvalues (eV)
-49.27672 -48.77310 -39.77083 -38.68056 -35.80092 -32.72759 -32.40916 -30.47912
-30.12581 -29.29976 -26.04950 -25.37698 -23.33438 -22.94355 -22.16147 -19.19074
-18.21556 -17.76150 -17.31886 -16.72219 -16.45877 -16.07176 -15.61789 -15.58930
-15.29983 -14.97216 -14.78681 -14.48151 -13.93030 -13.84498 -13.64259 -13.26137
-12.93391 -12.85358 -12.58786 -12.42269 -12.13797 -11.99781 -11.78616 -11.57034
-11.46224 -11.05260 -11.01918 -10.98769 -10.74760 -9.79779 -9.47420 -9.04286
-9.02352 -8.88762 -8.59628 -8.19758 -6.47261 -6.19441 -3.89753 0.73012
0.81836 2.88785 3.09189 3.20624 3.24524 3.29065 3.34044 3.66735
3.75174 4.22420 4.27023 4.35938 4.43221 4.62492 4.87180 4.93842
4.95825 5.15317 5.20055 5.29186 5.39996 5.48647 5.58791 5.60948
5.72266 5.76327 5.79098 5.80927 5.91456 5.94642 5.96493 6.09788
6.26917 6.58197 6.64546 7.54972 7.61213 8.36939 8.59800 9.25624
10.87893
Molecular weight = 315.08amu
Principal moments of inertia in cm(-1)
A = 0.020569 B = 0.003692 C = 0.003454
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1360.946976 B = 7582.995559 C = 8104.729133
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.177 4.177
2 C 0.108 3.892
3 N -0.616 5.616
4 C 0.159 3.841
5 C -0.180 4.180
6 C 0.139 3.861
7 F -0.129 7.129
8 C -0.175 4.175
9 C -0.060 4.060
10 C -0.171 4.171
11 C 0.156 3.844
12 F -0.104 7.104
13 C 0.529 3.471
14 O -0.500 6.500
15 C -0.149 4.149
16 S -0.060 6.060
17 C -0.535 4.535
18 H 0.071 0.929
19 C 0.074 3.926
20 N -0.868 5.868
21 Si 0.917 3.083
22 H -0.274 1.274
23 H -0.283 1.283
24 H -0.274 1.274
25 H 0.058 0.942
26 H 0.060 0.940
27 H 0.065 0.935
28 H 0.084 0.916
29 H 0.076 0.924
30 H 0.100 0.900
31 H 0.089 0.911
32 H 0.140 0.860
33 H 0.141 0.859
34 H 0.142 0.858
35 H 0.088 0.912
36 H 0.088 0.912
37 H 0.269 0.731
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.321 -3.268 21.730 23.162
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.235 4.235
2 C -0.015 4.015
3 N -0.352 5.352
4 C 0.036 3.964
5 C -0.183 4.183
6 C 0.119 3.881
7 F -0.108 7.108
8 C -0.194 4.194
9 C -0.078 4.078
10 C -0.190 4.190
11 C 0.136 3.864
12 F -0.081 7.081
13 C 0.317 3.683
14 O -0.373 6.373
15 C -0.299 4.299
16 S 0.167 5.833
17 C -0.684 4.684
18 H 0.089 0.911
19 C -0.135 4.135
20 N -0.503 5.503
21 Si 0.744 3.256
22 H -0.200 1.200
23 H -0.208 1.208
24 H -0.199 1.199
25 H 0.077 0.923
26 H 0.079 0.921
27 H 0.084 0.916
28 H 0.102 0.898
29 H 0.095 0.905
30 H 0.118 0.882
31 H 0.107 0.893
32 H 0.158 0.842
33 H 0.159 0.841
34 H 0.160 0.840
35 H 0.106 0.894
36 H 0.106 0.894
37 H 0.078 0.922
Dipole moment (debyes) X Y Z Total
from point charges -6.585 -1.460 21.547 22.578
hybrid contribution -0.738 -2.242 -0.985 2.557
sum -7.323 -3.702 20.562 22.139
Atomic orbital electron populations
1.22329 0.96168 1.02231 1.02778 1.21559 0.94510 0.82217 1.03222
1.48067 1.68081 1.14209 1.04856 1.20071 0.93289 0.96939 0.86092
1.20364 1.00549 0.94799 1.02629 1.17151 0.94647 0.79418 0.96843
1.91495 1.94674 1.35506 1.89112 1.21134 0.97408 0.96320 1.04544
1.20836 0.98540 0.93384 0.95048 1.21305 0.93959 1.02103 1.01663
1.17379 0.88207 0.89937 0.90911 1.91709 1.65116 1.80654 1.70663
1.20415 0.76681 0.86684 0.84529 1.90741 1.43033 1.16922 1.86564
1.23573 1.04654 1.04485 0.97185 1.85394 1.86802 1.17876 0.93247
1.22821 1.51788 1.01481 0.92271 0.91062 1.24975 0.94680 0.95512
0.98318 1.70010 1.42938 1.15629 1.21718 0.86245 0.78949 0.80070
0.80361 1.19959 1.20809 1.19940 0.92345 0.92125 0.91619 0.89795
0.90547 0.88154 0.89257 0.84244 0.84091 0.83965 0.89353 0.89398
0.92159
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -2.02 10.24 37.16 0.38 -1.64 16
2 C 0.11 1.27 5.98 -4.04 -0.02 1.25 16
3 N -0.62 -9.14 2.46 -175.06 -0.43 -9.57 16
4 C 0.16 2.09 5.24 -5.19 -0.03 2.06 16
5 C -0.18 -2.29 5.40 -104.49 -0.56 -2.85 16
6 C 0.14 1.49 5.58 -39.42 -0.22 1.27 16
7 F -0.13 -1.34 15.11 2.25 0.03 -1.31 16
8 C -0.18 -1.53 10.03 -39.50 -0.40 -1.93 16
9 C -0.06 -0.50 10.04 -39.60 -0.40 -0.89 16
10 C -0.17 -1.83 10.03 -39.50 -0.40 -2.22 16
11 C 0.16 2.15 7.24 -39.43 -0.29 1.86 16
12 F -0.10 -1.78 14.20 2.25 0.03 -1.75 16
13 C 0.53 10.29 7.69 -10.99 -0.08 10.20 16
14 O -0.50 -11.40 13.18 5.56 0.07 -11.32 16
15 C -0.15 -3.10 4.71 36.01 0.17 -2.93 16
16 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16
17 C -0.54 -15.38 9.50 30.94 0.29 -15.09 16
18 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16
19 C 0.07 2.14 5.49 -17.43 -0.10 2.04 16
20 N -0.87 -26.36 13.22 55.49 0.73 -25.62 16
21 Si 0.92 21.54 29.55 -169.99 -5.02 16.52 16
22 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16
23 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16
24 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16
25 H 0.06 0.67 4.45 -51.93 -0.23 0.44 16
26 H 0.06 0.80 7.22 -51.93 -0.37 0.43 16
27 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16
28 H 0.08 0.99 6.44 -51.93 -0.33 0.65 16
29 H 0.08 0.73 7.89 -51.93 -0.41 0.32 16
30 H 0.10 1.47 6.92 -51.92 -0.36 1.11 16
31 H 0.09 0.94 7.40 -51.93 -0.38 0.55 16
32 H 0.14 0.88 8.06 -52.49 -0.42 0.46 16
33 H 0.14 0.73 8.06 -52.49 -0.42 0.31 16
34 H 0.14 1.29 8.06 -52.49 -0.42 0.87 16
35 H 0.09 1.71 7.40 -51.92 -0.38 1.33 16
36 H 0.09 1.73 7.19 -51.91 -0.37 1.36 16
37 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16
LS Contribution 330.10 15.07 4.97 4.97
Total: -1.00 -34.32 330.10 -7.55 -41.87
By element:
Atomic # 1 Polarization: 3.03 SS G_CDS: -4.09 Total: -1.06 kcal
Atomic # 6 Polarization: -7.21 SS G_CDS: -1.65 Total: -8.86 kcal
Atomic # 7 Polarization: -35.50 SS G_CDS: 0.30 Total: -35.20 kcal
Atomic # 8 Polarization: -11.40 SS G_CDS: 0.07 Total: -11.32 kcal
Atomic # 9 Polarization: -3.13 SS G_CDS: 0.07 Total: -3.06 kcal
Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal
Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal
Total LS contribution 4.97 Total: 4.97 kcal
Total: -34.32 -7.55 -41.87 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000195392505.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -54.662 kcal
(2) G-P(sol) polarization free energy of solvation -34.316 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.978 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.551 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.867 kcal
(6) G-S(sol) free energy of system = (1) + (5) -96.529 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.58 seconds