Wall clock time and date at job start Tue Mar 31 2020 11:11:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46504 * 109.46670 * 2 1 4 4 C 1.46499 * 119.99589 * 90.00502 * 3 2 1 5 5 C 1.50701 * 109.47094 * 269.99310 * 4 3 2 6 6 C 1.38425 * 120.02136 * 90.00193 * 5 4 3 7 7 F 1.35101 * 120.01402 * 359.70506 * 6 5 4 8 8 C 1.38476 * 119.97328 * 179.97438 * 6 5 4 9 9 C 1.38207 * 120.02410 * 0.02562 * 8 6 5 10 10 C 1.38207 * 120.05360 * 359.97438 * 9 8 6 11 11 C 1.38412 * 120.02814 * 269.97826 * 5 4 3 12 12 F 1.35096 * 120.01191 * 0.02562 * 11 5 4 13 13 C 1.34772 * 120.00196 * 270.00065 * 3 2 1 14 14 O 1.21280 * 120.00180 * 180.02562 * 13 3 2 15 15 C 1.50701 * 120.00189 * 0.02562 * 13 3 2 16 16 S 1.81000 * 109.47268 * 179.97438 * 15 13 3 17 17 C 1.76201 * 99.99972 * 180.02562 * 16 15 13 18 18 H 1.07997 * 119.99836 * 0.02562 * 17 16 15 19 19 C 1.38798 * 119.99936 * 179.97438 * 17 16 15 20 20 N 1.31629 * 120.00136 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99898 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47162 * 60.00519 * 21 19 17 23 23 H 1.48500 * 109.46965 * 180.02562 * 21 19 17 24 24 H 1.48498 * 109.47430 * 300.00524 * 21 19 17 25 25 H 1.09004 * 109.47614 * 299.99565 * 1 2 3 26 26 H 1.09002 * 109.47578 * 59.99927 * 1 2 3 27 27 H 1.09001 * 109.46920 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46730 * 240.00523 * 2 1 3 29 29 H 1.08990 * 109.47232 * 120.00058 * 2 1 3 30 30 H 1.09008 * 109.47018 * 149.99924 * 4 3 2 31 31 H 1.09006 * 109.47580 * 29.99738 * 4 3 2 32 32 H 1.08001 * 119.98752 * 179.97438 * 8 6 5 33 33 H 1.08000 * 119.97200 * 180.02562 * 9 8 6 34 34 H 1.07995 * 119.99247 * 179.97438 * 10 9 8 35 35 H 1.08993 * 109.47466 * 300.00522 * 15 13 3 36 36 H 1.09007 * 109.46930 * 59.99966 * 15 13 3 37 37 H 0.97003 * 120.00085 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.2624 2.0718 1.2688 5 6 1.0066 2.7822 1.7039 6 6 0.0834 2.1300 2.5030 7 9 0.3050 0.8543 2.8885 8 6 -1.0699 2.7840 2.9027 9 6 -1.2998 4.0870 2.5035 10 6 -0.3788 4.7391 1.7056 11 6 0.7755 4.0873 1.3051 12 9 1.6756 4.7250 0.5251 13 6 2.2428 2.0167 -1.1671 14 8 2.6474 3.1600 -1.1671 15 6 1.9911 1.3065 -2.4723 16 16 2.3825 2.4157 -3.8480 17 6 2.0080 1.3602 -5.2082 18 1 1.6523 0.3561 -5.0305 19 6 2.1689 1.8196 -6.5080 20 7 2.6019 3.0436 -6.7246 21 14 1.7711 0.7008 -7.9500 22 1 0.3428 0.2994 -7.8858 23 1 2.0259 1.4234 -9.2221 24 1 2.6288 -0.5099 -7.8886 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8932 -0.5138 -0.8901 29 1 1.8933 -0.5138 0.8899 30 1 3.0643 2.7986 1.1384 31 1 2.5506 1.3451 2.0284 32 1 -1.7905 2.2752 3.5259 33 1 -2.1994 4.5963 2.8160 34 1 -0.5596 5.7572 1.3939 35 1 2.6209 0.4189 -2.5303 36 1 0.9430 1.0127 -2.5298 37 1 2.7147 3.3646 -7.6330 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000195392505.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:35 Heat of formation + Delta-G solvation = -96.529368 kcal Electronic energy + Delta-G solvation = -24262.046491 eV Core-core repulsion = 20380.942669 eV Total energy + Delta-G solvation = -3881.103822 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.085 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.27672 -48.77310 -39.77083 -38.68056 -35.80092 -32.72759 -32.40916 -30.47912 -30.12581 -29.29976 -26.04950 -25.37698 -23.33438 -22.94355 -22.16147 -19.19074 -18.21556 -17.76150 -17.31886 -16.72219 -16.45877 -16.07176 -15.61789 -15.58930 -15.29983 -14.97216 -14.78681 -14.48151 -13.93030 -13.84498 -13.64259 -13.26137 -12.93391 -12.85358 -12.58786 -12.42269 -12.13797 -11.99781 -11.78616 -11.57034 -11.46224 -11.05260 -11.01918 -10.98769 -10.74760 -9.79779 -9.47420 -9.04286 -9.02352 -8.88762 -8.59628 -8.19758 -6.47261 -6.19441 -3.89753 0.73012 0.81836 2.88785 3.09189 3.20624 3.24524 3.29065 3.34044 3.66735 3.75174 4.22420 4.27023 4.35938 4.43221 4.62492 4.87180 4.93842 4.95825 5.15317 5.20055 5.29186 5.39996 5.48647 5.58791 5.60948 5.72266 5.76327 5.79098 5.80927 5.91456 5.94642 5.96493 6.09788 6.26917 6.58197 6.64546 7.54972 7.61213 8.36939 8.59800 9.25624 10.87893 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.020569 B = 0.003692 C = 0.003454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.946976 B = 7582.995559 C = 8104.729133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.108 3.892 3 N -0.616 5.616 4 C 0.159 3.841 5 C -0.180 4.180 6 C 0.139 3.861 7 F -0.129 7.129 8 C -0.175 4.175 9 C -0.060 4.060 10 C -0.171 4.171 11 C 0.156 3.844 12 F -0.104 7.104 13 C 0.529 3.471 14 O -0.500 6.500 15 C -0.149 4.149 16 S -0.060 6.060 17 C -0.535 4.535 18 H 0.071 0.929 19 C 0.074 3.926 20 N -0.868 5.868 21 Si 0.917 3.083 22 H -0.274 1.274 23 H -0.283 1.283 24 H -0.274 1.274 25 H 0.058 0.942 26 H 0.060 0.940 27 H 0.065 0.935 28 H 0.084 0.916 29 H 0.076 0.924 30 H 0.100 0.900 31 H 0.089 0.911 32 H 0.140 0.860 33 H 0.141 0.859 34 H 0.142 0.858 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.321 -3.268 21.730 23.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.015 4.015 3 N -0.352 5.352 4 C 0.036 3.964 5 C -0.183 4.183 6 C 0.119 3.881 7 F -0.108 7.108 8 C -0.194 4.194 9 C -0.078 4.078 10 C -0.190 4.190 11 C 0.136 3.864 12 F -0.081 7.081 13 C 0.317 3.683 14 O -0.373 6.373 15 C -0.299 4.299 16 S 0.167 5.833 17 C -0.684 4.684 18 H 0.089 0.911 19 C -0.135 4.135 20 N -0.503 5.503 21 Si 0.744 3.256 22 H -0.200 1.200 23 H -0.208 1.208 24 H -0.199 1.199 25 H 0.077 0.923 26 H 0.079 0.921 27 H 0.084 0.916 28 H 0.102 0.898 29 H 0.095 0.905 30 H 0.118 0.882 31 H 0.107 0.893 32 H 0.158 0.842 33 H 0.159 0.841 34 H 0.160 0.840 35 H 0.106 0.894 36 H 0.106 0.894 37 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -6.585 -1.460 21.547 22.578 hybrid contribution -0.738 -2.242 -0.985 2.557 sum -7.323 -3.702 20.562 22.139 Atomic orbital electron populations 1.22329 0.96168 1.02231 1.02778 1.21559 0.94510 0.82217 1.03222 1.48067 1.68081 1.14209 1.04856 1.20071 0.93289 0.96939 0.86092 1.20364 1.00549 0.94799 1.02629 1.17151 0.94647 0.79418 0.96843 1.91495 1.94674 1.35506 1.89112 1.21134 0.97408 0.96320 1.04544 1.20836 0.98540 0.93384 0.95048 1.21305 0.93959 1.02103 1.01663 1.17379 0.88207 0.89937 0.90911 1.91709 1.65116 1.80654 1.70663 1.20415 0.76681 0.86684 0.84529 1.90741 1.43033 1.16922 1.86564 1.23573 1.04654 1.04485 0.97185 1.85394 1.86802 1.17876 0.93247 1.22821 1.51788 1.01481 0.92271 0.91062 1.24975 0.94680 0.95512 0.98318 1.70010 1.42938 1.15629 1.21718 0.86245 0.78949 0.80070 0.80361 1.19959 1.20809 1.19940 0.92345 0.92125 0.91619 0.89795 0.90547 0.88154 0.89257 0.84244 0.84091 0.83965 0.89353 0.89398 0.92159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.02 10.24 37.16 0.38 -1.64 16 2 C 0.11 1.27 5.98 -4.04 -0.02 1.25 16 3 N -0.62 -9.14 2.46 -175.06 -0.43 -9.57 16 4 C 0.16 2.09 5.24 -5.19 -0.03 2.06 16 5 C -0.18 -2.29 5.40 -104.49 -0.56 -2.85 16 6 C 0.14 1.49 5.58 -39.42 -0.22 1.27 16 7 F -0.13 -1.34 15.11 2.25 0.03 -1.31 16 8 C -0.18 -1.53 10.03 -39.50 -0.40 -1.93 16 9 C -0.06 -0.50 10.04 -39.60 -0.40 -0.89 16 10 C -0.17 -1.83 10.03 -39.50 -0.40 -2.22 16 11 C 0.16 2.15 7.24 -39.43 -0.29 1.86 16 12 F -0.10 -1.78 14.20 2.25 0.03 -1.75 16 13 C 0.53 10.29 7.69 -10.99 -0.08 10.20 16 14 O -0.50 -11.40 13.18 5.56 0.07 -11.32 16 15 C -0.15 -3.10 4.71 36.01 0.17 -2.93 16 16 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 17 C -0.54 -15.38 9.50 30.94 0.29 -15.09 16 18 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 19 C 0.07 2.14 5.49 -17.43 -0.10 2.04 16 20 N -0.87 -26.36 13.22 55.49 0.73 -25.62 16 21 Si 0.92 21.54 29.55 -169.99 -5.02 16.52 16 22 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 23 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 24 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 25 H 0.06 0.67 4.45 -51.93 -0.23 0.44 16 26 H 0.06 0.80 7.22 -51.93 -0.37 0.43 16 27 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.08 0.99 6.44 -51.93 -0.33 0.65 16 29 H 0.08 0.73 7.89 -51.93 -0.41 0.32 16 30 H 0.10 1.47 6.92 -51.92 -0.36 1.11 16 31 H 0.09 0.94 7.40 -51.93 -0.38 0.55 16 32 H 0.14 0.88 8.06 -52.49 -0.42 0.46 16 33 H 0.14 0.73 8.06 -52.49 -0.42 0.31 16 34 H 0.14 1.29 8.06 -52.49 -0.42 0.87 16 35 H 0.09 1.71 7.40 -51.92 -0.38 1.33 16 36 H 0.09 1.73 7.19 -51.91 -0.37 1.36 16 37 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 330.10 15.07 4.97 4.97 Total: -1.00 -34.32 330.10 -7.55 -41.87 By element: Atomic # 1 Polarization: 3.03 SS G_CDS: -4.09 Total: -1.06 kcal Atomic # 6 Polarization: -7.21 SS G_CDS: -1.65 Total: -8.86 kcal Atomic # 7 Polarization: -35.50 SS G_CDS: 0.30 Total: -35.20 kcal Atomic # 8 Polarization: -11.40 SS G_CDS: 0.07 Total: -11.32 kcal Atomic # 9 Polarization: -3.13 SS G_CDS: 0.07 Total: -3.06 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -34.32 -7.55 -41.87 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195392505.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.662 kcal (2) G-P(sol) polarization free energy of solvation -34.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds