Wall clock time and date at job start Tue Mar 31 2020 11:11:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46504 * 109.46670 * 2 1 4 4 C 1.46499 * 119.99589 * 90.00502 * 3 2 1 5 5 C 1.50701 * 109.47094 * 269.99310 * 4 3 2 6 6 C 1.38425 * 120.02136 * 90.00193 * 5 4 3 7 7 F 1.35101 * 120.01402 * 359.70506 * 6 5 4 8 8 C 1.38476 * 119.97328 * 179.97438 * 6 5 4 9 9 C 1.38207 * 120.02410 * 0.02562 * 8 6 5 10 10 C 1.38207 * 120.05360 * 359.97438 * 9 8 6 11 11 C 1.38412 * 120.02814 * 269.97826 * 5 4 3 12 12 F 1.35096 * 120.01191 * 0.02562 * 11 5 4 13 13 C 1.34772 * 120.00196 * 270.00065 * 3 2 1 14 14 O 1.21280 * 120.00180 * 180.02562 * 13 3 2 15 15 C 1.50701 * 120.00189 * 0.02562 * 13 3 2 16 16 S 1.81000 * 109.47268 * 179.97438 * 15 13 3 17 17 C 1.76201 * 99.99972 * 180.02562 * 16 15 13 18 18 H 1.07997 * 119.99836 * 0.02562 * 17 16 15 19 19 C 1.38798 * 119.99936 * 179.97438 * 17 16 15 20 20 N 1.31629 * 120.00136 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99898 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47162 * 60.00519 * 21 19 17 23 23 H 1.48500 * 109.46965 * 180.02562 * 21 19 17 24 24 H 1.48498 * 109.47430 * 300.00524 * 21 19 17 25 25 H 1.09004 * 109.47614 * 299.99565 * 1 2 3 26 26 H 1.09002 * 109.47578 * 59.99927 * 1 2 3 27 27 H 1.09001 * 109.46920 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46730 * 240.00523 * 2 1 3 29 29 H 1.08990 * 109.47232 * 120.00058 * 2 1 3 30 30 H 1.09008 * 109.47018 * 149.99924 * 4 3 2 31 31 H 1.09006 * 109.47580 * 29.99738 * 4 3 2 32 32 H 1.08001 * 119.98752 * 179.97438 * 8 6 5 33 33 H 1.08000 * 119.97200 * 180.02562 * 9 8 6 34 34 H 1.07995 * 119.99247 * 179.97438 * 10 9 8 35 35 H 1.08993 * 109.47466 * 300.00522 * 15 13 3 36 36 H 1.09007 * 109.46930 * 59.99966 * 15 13 3 37 37 H 0.97003 * 120.00085 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.2624 2.0718 1.2688 5 6 1.0066 2.7822 1.7039 6 6 0.0834 2.1300 2.5030 7 9 0.3050 0.8543 2.8885 8 6 -1.0699 2.7840 2.9027 9 6 -1.2998 4.0870 2.5035 10 6 -0.3788 4.7391 1.7056 11 6 0.7755 4.0873 1.3051 12 9 1.6756 4.7250 0.5251 13 6 2.2428 2.0167 -1.1671 14 8 2.6474 3.1600 -1.1671 15 6 1.9911 1.3065 -2.4723 16 16 2.3825 2.4157 -3.8480 17 6 2.0080 1.3602 -5.2082 18 1 1.6523 0.3561 -5.0305 19 6 2.1689 1.8196 -6.5080 20 7 2.6019 3.0436 -6.7246 21 14 1.7711 0.7008 -7.9500 22 1 0.3428 0.2994 -7.8858 23 1 2.0259 1.4234 -9.2221 24 1 2.6288 -0.5099 -7.8886 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8932 -0.5138 -0.8901 29 1 1.8933 -0.5138 0.8899 30 1 3.0643 2.7986 1.1384 31 1 2.5506 1.3451 2.0284 32 1 -1.7905 2.2752 3.5259 33 1 -2.1994 4.5963 2.8160 34 1 -0.5596 5.7572 1.3939 35 1 2.6209 0.4189 -2.5303 36 1 0.9430 1.0127 -2.5298 37 1 2.7147 3.3646 -7.6330 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000195392505.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:34 Heat of formation + Delta-G solvation = -117.118999 kcal Electronic energy + Delta-G solvation = -24262.939325 eV Core-core repulsion = 20380.942669 eV Total energy + Delta-G solvation = -3881.996656 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.085 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -50.07386 -49.88543 -41.05626 -39.63265 -37.10414 -34.59376 -33.69479 -31.35331 -31.14919 -30.76844 -27.75791 -26.95833 -24.39211 -23.79886 -23.07419 -20.65100 -19.54424 -19.09189 -18.49862 -17.93209 -17.48273 -17.15519 -16.88815 -16.72891 -16.53518 -16.40021 -16.16453 -15.79973 -15.41395 -14.89759 -14.81994 -14.56273 -14.48098 -13.90823 -13.70624 -13.58820 -13.29723 -13.18973 -12.97616 -12.87918 -12.73585 -12.66050 -12.50101 -12.38688 -11.98716 -11.73845 -11.13437 -10.93043 -10.28080 -10.02883 -9.78452 -9.72959 -8.68120 -8.34956 -6.13670 -0.09355 -0.01587 1.24971 1.43122 1.44850 1.54560 1.57689 2.05235 2.26838 2.47038 2.91440 2.98915 3.23629 3.42570 3.47819 3.55836 3.77844 3.88658 4.00439 4.16379 4.20603 4.29006 4.36330 4.44104 4.53529 4.54227 4.78416 4.80634 4.88388 4.92371 5.01727 5.07627 5.19699 5.28884 5.40139 5.49707 5.78997 6.18490 6.23614 7.05761 7.13839 8.74110 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.020569 B = 0.003692 C = 0.003454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.946976 B = 7582.995559 C = 8104.729133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.100 3.900 3 N -0.603 5.603 4 C 0.158 3.842 5 C -0.194 4.194 6 C 0.137 3.863 7 F -0.126 7.126 8 C -0.162 4.162 9 C -0.046 4.046 10 C -0.176 4.176 11 C 0.113 3.887 12 F -0.137 7.137 13 C 0.527 3.473 14 O -0.543 6.543 15 C -0.121 4.121 16 S -0.149 6.149 17 C -0.547 4.547 18 H 0.081 0.919 19 C 0.015 3.985 20 N -0.911 5.911 21 Si 0.998 3.002 22 H -0.262 1.262 23 H -0.278 1.278 24 H -0.261 1.261 25 H 0.059 0.941 26 H 0.036 0.964 27 H 0.091 0.909 28 H 0.085 0.915 29 H 0.108 0.892 30 H 0.075 0.925 31 H 0.120 0.880 32 H 0.174 0.826 33 H 0.182 0.818 34 H 0.151 0.849 35 H 0.106 0.894 36 H 0.100 0.900 37 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.636 -5.858 23.374 25.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.022 4.022 3 N -0.337 5.337 4 C 0.035 3.965 5 C -0.197 4.197 6 C 0.117 3.883 7 F -0.104 7.104 8 C -0.181 4.181 9 C -0.064 4.064 10 C -0.195 4.195 11 C 0.093 3.907 12 F -0.115 7.115 13 C 0.314 3.686 14 O -0.419 6.419 15 C -0.272 4.272 16 S 0.078 5.922 17 C -0.695 4.695 18 H 0.099 0.901 19 C -0.190 4.190 20 N -0.548 5.548 21 Si 0.819 3.181 22 H -0.186 1.186 23 H -0.203 1.203 24 H -0.186 1.186 25 H 0.078 0.922 26 H 0.055 0.945 27 H 0.109 0.891 28 H 0.103 0.897 29 H 0.127 0.873 30 H 0.094 0.906 31 H 0.138 0.862 32 H 0.191 0.809 33 H 0.199 0.801 34 H 0.169 0.831 35 H 0.124 0.876 36 H 0.118 0.882 37 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -8.916 -4.090 23.242 25.227 hybrid contribution -0.087 -1.461 -1.295 1.954 sum -9.002 -5.551 21.947 24.362 Atomic orbital electron populations 1.22288 0.95516 1.03533 1.01654 1.21882 0.95031 0.80362 1.04920 1.48030 1.66450 1.15198 1.04010 1.20180 0.93407 0.97205 0.85658 1.20290 1.00888 0.94645 1.03884 1.17223 0.94870 0.79589 0.96645 1.91501 1.94715 1.35184 1.88991 1.21579 0.96778 0.96271 1.03456 1.21309 0.98810 0.93205 0.93061 1.21577 0.93342 1.02736 1.01818 1.17892 0.89253 0.91079 0.92431 1.91622 1.66523 1.81360 1.72023 1.20202 0.76840 0.86177 0.85391 1.90735 1.45336 1.18679 1.87196 1.23374 1.05519 1.03111 0.95181 1.85581 1.87556 1.21927 0.97107 1.23152 1.51913 1.01744 0.92696 0.90069 1.26122 0.94086 0.97145 1.01622 1.70182 1.44159 1.17898 1.22532 0.85013 0.79313 0.77847 0.75883 1.18631 1.20297 1.18587 0.92176 0.94501 0.89064 0.89652 0.87337 0.90618 0.86171 0.80873 0.80083 0.83092 0.87608 0.88170 0.91976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.49 10.24 71.98 0.74 -2.75 16 2 C 0.10 2.11 5.98 86.38 0.52 2.63 16 3 N -0.60 -17.62 2.46 -826.15 -2.03 -19.65 16 4 C 0.16 4.13 5.24 85.63 0.45 4.58 16 5 C -0.19 -4.84 5.40 -19.78 -0.11 -4.95 16 6 C 0.14 2.59 5.58 22.37 0.12 2.71 16 7 F -0.13 -2.18 15.11 44.97 0.68 -1.50 16 8 C -0.16 -2.21 10.03 22.32 0.22 -1.98 16 9 C -0.05 -0.61 10.04 22.25 0.22 -0.39 16 10 C -0.18 -3.61 10.03 22.32 0.22 -3.39 16 11 C 0.11 3.22 7.24 22.37 0.16 3.38 16 12 F -0.14 -5.14 14.20 44.97 0.64 -4.50 16 13 C 0.53 21.08 7.69 87.66 0.67 21.75 16 14 O -0.54 -26.32 13.18 -3.03 -0.04 -26.36 16 15 C -0.12 -5.11 4.71 71.24 0.34 -4.78 16 16 S -0.15 -8.54 20.57 -56.49 -1.16 -9.70 16 17 C -0.55 -31.89 9.50 67.95 0.65 -31.25 16 18 H 0.08 4.39 7.80 -2.91 -0.02 4.37 16 19 C 0.02 0.87 5.49 84.86 0.47 1.34 16 20 N -0.91 -56.84 13.22 21.65 0.29 -56.55 16 21 Si 1.00 44.06 29.55 68.60 2.03 46.09 16 22 H -0.26 -10.94 7.11 99.48 0.71 -10.24 16 23 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 24 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 25 H 0.06 1.20 4.45 -2.38 -0.01 1.19 16 26 H 0.04 0.92 7.22 -2.39 -0.02 0.90 16 27 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 28 H 0.09 1.81 6.44 -2.39 -0.02 1.80 16 29 H 0.11 1.66 7.89 -2.39 -0.02 1.64 16 30 H 0.08 2.36 6.92 -2.38 -0.02 2.34 16 31 H 0.12 2.31 7.40 -2.38 -0.02 2.30 16 32 H 0.17 1.23 8.06 -2.91 -0.02 1.21 16 33 H 0.18 0.96 8.06 -2.91 -0.02 0.93 16 34 H 0.15 2.70 8.06 -2.91 -0.02 2.67 16 35 H 0.11 4.06 7.40 -2.40 -0.02 4.04 16 36 H 0.10 3.96 7.19 -2.39 -0.02 3.94 16 37 H 0.27 15.71 8.31 -92.71 -0.77 14.94 16 Total: -1.00 -79.46 330.10 6.18 -73.28 By element: Atomic # 1 Polarization: 10.89 SS G_CDS: 1.11 Total: 11.99 kcal Atomic # 6 Polarization: -17.76 SS G_CDS: 4.67 Total: -13.09 kcal Atomic # 7 Polarization: -74.46 SS G_CDS: -1.74 Total: -76.20 kcal Atomic # 8 Polarization: -26.32 SS G_CDS: -0.04 Total: -26.36 kcal Atomic # 9 Polarization: -7.32 SS G_CDS: 1.32 Total: -6.00 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.09 kcal Atomic # 16 Polarization: -8.54 SS G_CDS: -1.16 Total: -9.70 kcal Total: -79.46 6.18 -73.28 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195392505.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.841 kcal (2) G-P(sol) polarization free energy of solvation -79.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds