Wall clock time and date at job start Tue Mar 31 2020 11:19:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36750 * 119.99404 * 2 1 4 4 H 1.08005 * 119.99845 * 203.24691 * 3 2 1 5 5 C 1.39095 * 120.00096 * 23.24748 * 3 2 1 6 6 N 1.31337 * 119.99945 * 14.70432 * 5 3 2 7 7 Si 1.86799 * 119.99633 * 194.70306 * 5 3 2 8 8 H 1.48499 * 109.47088 * 94.98144 * 7 5 3 9 9 H 1.48503 * 109.46998 * 214.97636 * 7 5 3 10 10 H 1.48502 * 109.47389 * 334.97918 * 7 5 3 11 11 C 1.34769 * 120.00445 * 179.97438 * 2 1 3 12 12 O 1.21783 * 120.00299 * 180.02562 * 11 2 1 13 13 C 1.41790 * 119.99821 * 0.02562 * 11 2 1 14 14 C 1.35162 * 119.99924 * 186.23361 * 13 11 2 15 15 C 1.46891 * 120.00088 * 8.88980 * 14 13 11 16 16 C 1.39960 * 120.21711 * 46.29338 * 15 14 13 17 17 C 1.37739 * 119.87844 * 179.97438 * 16 15 14 18 18 C 1.38576 * 120.32317 * 359.97438 * 17 16 15 19 19 C 1.38142 * 120.44030 * 0.02562 * 18 17 16 20 20 C 1.38591 * 120.11356 * 359.97438 * 19 18 17 21 21 O 1.35693 * 120.15806 * 180.27157 * 20 19 18 22 22 C 1.42891 * 117.00196 * 359.72876 * 21 20 19 23 23 F 1.39903 * 109.47242 * 59.99842 * 22 21 20 24 24 F 1.39910 * 109.47143 * 179.97438 * 22 21 20 25 25 F 1.39898 * 109.47239 * 299.99523 * 22 21 20 26 26 H 1.09005 * 109.47210 * 265.12990 * 1 2 3 27 27 H 1.08992 * 109.47376 * 25.13554 * 1 2 3 28 28 H 1.09007 * 109.46504 * 145.13287 * 1 2 3 29 29 H 0.97008 * 119.99879 * 179.97438 * 6 5 3 30 30 H 1.07998 * 120.00150 * 6.23164 * 13 11 2 31 31 H 1.08000 * 119.99903 * 188.88816 * 14 13 11 32 32 H 1.08002 * 120.05859 * 359.95713 * 16 15 14 33 33 H 1.08004 * 119.84090 * 179.97438 * 17 16 15 34 34 H 1.08004 * 119.78115 * 179.97438 * 18 17 16 35 35 H 1.07999 * 119.93988 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1486 1.1844 0.0000 4 1 3.1629 1.2224 -0.3692 5 6 1.5378 2.3400 0.4755 6 7 0.4340 2.2561 1.1823 7 14 2.2873 4.0112 0.1086 8 1 1.6408 4.5899 -1.0966 9 1 2.0731 4.9150 1.2673 10 1 3.7439 3.8575 -0.1366 11 6 2.1389 -1.1671 0.0005 12 8 3.3568 -1.1670 0.0010 13 6 1.4301 -2.3950 0.0005 14 6 2.0999 -3.5621 0.1281 15 6 3.5305 -3.5551 0.4614 16 6 4.0100 -2.7371 1.4909 17 6 5.3527 -2.7365 1.7979 18 6 6.2320 -3.5426 1.0926 19 6 5.7731 -4.3552 0.0741 20 6 4.4257 -4.3701 -0.2501 21 8 3.9732 -5.1720 -1.2467 22 6 4.9425 -5.9723 -1.9262 23 9 5.5666 -6.8264 -1.0106 24 9 4.3091 -6.7325 -2.9154 25 9 5.9008 -5.1422 -2.5176 26 1 -0.3634 -0.0872 1.0240 27 1 -0.3634 0.9303 -0.4365 28 1 -0.3632 -0.8433 -0.5875 29 1 0.0082 3.0621 1.5142 30 1 0.3549 -2.3979 -0.1014 31 1 1.5833 -4.4996 -0.0149 32 1 3.3284 -2.1072 2.0433 33 1 5.7221 -2.1047 2.5921 34 1 7.2832 -3.5349 1.3404 35 1 6.4656 -4.9799 -0.4705 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000207788904.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:50 Heat of formation + Delta-G solvation = -155.366387 kcal Electronic energy + Delta-G solvation = -26448.379852 eV Core-core repulsion = 21998.511489 eV Total energy + Delta-G solvation = -4449.868363 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.087 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -50.39462 -48.13292 -47.97361 -40.06435 -38.76436 -37.18679 -34.99935 -33.04873 -31.83507 -29.97892 -29.31364 -26.50571 -25.85620 -24.98604 -23.27579 -22.28263 -21.13282 -19.45123 -19.09708 -18.95519 -17.94212 -17.08129 -16.79053 -16.16293 -15.52589 -15.11735 -14.94669 -14.75912 -14.64094 -14.44391 -14.32594 -14.30424 -14.08534 -14.06114 -13.93083 -13.56677 -12.96572 -12.92058 -12.79443 -12.16952 -11.90796 -11.59290 -11.42909 -11.32627 -11.13149 -10.93518 -10.70250 -10.42965 -10.38388 -9.41352 -9.16113 -8.58849 -8.14476 -7.72402 -7.42829 -6.50806 -3.94121 1.21511 1.62878 1.73575 2.32835 2.92625 3.11263 3.17651 3.23531 3.86012 3.96379 4.03584 4.23775 4.37363 4.92600 4.96922 5.04503 5.10037 5.36366 5.44030 5.67352 5.73848 5.91973 5.94473 6.26280 6.36073 6.40070 6.55441 6.71642 6.77370 6.82201 6.95113 7.06051 7.10294 7.36283 7.40581 8.05043 8.38313 9.08987 9.29709 9.95117 10.52043 Molecular weight = 315.09amu Principal moments of inertia in cm(-1) A = 0.021434 B = 0.003641 C = 0.003491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.005166 B = 7687.477564 C = 8017.795061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.104 3.896 2 N -0.424 5.424 3 C -0.296 4.296 4 H 0.103 0.897 5 C 0.031 3.969 6 N -0.867 5.867 7 Si 0.927 3.073 8 H -0.276 1.276 9 H -0.282 1.282 10 H -0.267 1.267 11 C 0.447 3.553 12 O -0.583 6.583 13 C -0.165 4.165 14 C -0.082 4.082 15 C -0.037 4.037 16 C 0.015 3.985 17 C -0.151 4.151 18 C -0.081 4.081 19 C -0.210 4.210 20 C 0.101 3.899 21 O -0.306 6.306 22 C 0.602 3.398 23 F -0.170 7.170 24 F -0.138 7.138 25 F -0.166 7.166 26 H 0.054 0.946 27 H 0.075 0.925 28 H 0.032 0.968 29 H 0.271 0.729 30 H 0.121 0.879 31 H 0.124 0.876 32 H 0.129 0.871 33 H 0.122 0.878 34 H 0.121 0.879 35 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.173 -13.232 -1.515 13.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.139 5.139 3 C -0.425 4.425 4 H 0.121 0.879 5 C -0.175 4.175 6 N -0.505 5.505 7 Si 0.754 3.246 8 H -0.202 1.202 9 H -0.208 1.208 10 H -0.191 1.191 11 C 0.240 3.760 12 O -0.472 6.472 13 C -0.186 4.186 14 C -0.104 4.104 15 C -0.038 4.038 16 C -0.004 4.004 17 C -0.170 4.170 18 C -0.099 4.099 19 C -0.229 4.229 20 C 0.059 3.941 21 O -0.226 6.226 22 C 0.511 3.489 23 F -0.152 7.152 24 F -0.119 7.119 25 F -0.148 7.148 26 H 0.073 0.927 27 H 0.094 0.906 28 H 0.050 0.950 29 H 0.081 0.919 30 H 0.139 0.861 31 H 0.142 0.858 32 H 0.147 0.853 33 H 0.140 0.860 34 H 0.139 0.861 35 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 4.408 -13.038 -1.512 13.846 hybrid contribution 0.233 0.835 -0.433 0.969 sum 4.641 -12.203 -1.945 13.200 Atomic orbital electron populations 1.21607 0.81288 1.00312 1.00805 1.43768 1.05628 1.05448 1.59020 1.19792 1.00114 0.84013 1.38560 0.87890 1.25441 0.96539 1.00454 0.95020 1.69979 1.19177 1.30002 1.31322 0.85881 0.79823 0.80894 0.78048 1.20236 1.20759 1.19080 1.16891 0.88087 0.84121 0.86897 1.90694 1.13087 1.86500 1.56884 1.22405 0.99993 0.93854 1.02384 1.21824 0.91964 0.97334 0.99269 1.18090 0.92597 0.96546 0.96583 1.20988 0.95570 0.90849 0.92984 1.20934 0.93512 1.00739 1.01783 1.20795 0.99282 0.95278 0.94583 1.21105 0.93050 1.05607 1.03096 1.18722 0.93288 0.93237 0.88870 1.86338 1.33965 1.53974 1.48321 1.19400 0.75861 0.76971 0.76672 1.93274 1.82878 1.71862 1.67155 1.93277 1.82862 1.74970 1.60819 1.93297 1.64826 1.72148 1.84576 0.92703 0.90625 0.94980 0.91858 0.86077 0.85784 0.85309 0.86013 0.86093 0.85935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.23 8.32 59.85 0.50 2.72 16 2 N -0.42 -10.53 3.00 -125.41 -0.38 -10.91 16 3 C -0.30 -7.95 9.25 -15.04 -0.14 -8.09 16 4 H 0.10 2.92 7.43 -52.48 -0.39 2.53 16 5 C 0.03 0.77 5.00 -17.45 -0.09 0.69 16 6 N -0.87 -22.10 10.88 55.50 0.60 -21.49 16 7 Si 0.93 19.95 29.58 -169.99 -5.03 14.93 16 8 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 9 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 10 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 11 C 0.45 10.61 6.58 -14.91 -0.10 10.51 16 12 O -0.58 -15.17 11.57 5.11 0.06 -15.11 16 13 C -0.17 -3.16 9.03 -39.32 -0.36 -3.52 16 14 C -0.08 -1.44 9.35 -37.18 -0.35 -1.79 16 15 C -0.04 -0.70 4.47 -104.93 -0.47 -1.17 16 16 C 0.01 0.28 6.59 -39.12 -0.26 0.02 16 17 C -0.15 -2.53 10.02 -39.64 -0.40 -2.93 16 18 C -0.08 -1.24 10.03 -39.49 -0.40 -1.64 16 19 C -0.21 -3.35 8.25 -39.49 -0.33 -3.68 16 20 C 0.10 1.76 6.50 -38.63 -0.25 1.51 16 21 O -0.31 -4.93 9.83 -18.78 -0.18 -5.12 16 22 C 0.60 8.17 3.42 101.05 0.35 8.52 16 23 F -0.17 -2.14 15.55 2.25 0.04 -2.10 16 24 F -0.14 -1.72 17.53 2.25 0.04 -1.68 16 25 F -0.17 -2.34 15.58 2.25 0.04 -2.30 16 26 H 0.05 1.19 7.87 -51.93 -0.41 0.78 16 27 H 0.08 1.71 6.72 -51.93 -0.35 1.37 16 28 H 0.03 0.57 6.29 -51.92 -0.33 0.25 16 29 H 0.27 6.51 8.31 -40.82 -0.34 6.18 16 30 H 0.12 1.99 6.14 -52.49 -0.32 1.66 16 31 H 0.12 1.79 8.06 -52.49 -0.42 1.37 16 32 H 0.13 2.57 7.14 -52.49 -0.37 2.20 16 33 H 0.12 1.79 8.06 -52.48 -0.42 1.36 16 34 H 0.12 1.47 8.06 -52.48 -0.42 1.05 16 35 H 0.12 1.73 5.10 -52.49 -0.27 1.46 16 LS Contribution 310.84 15.07 4.68 4.68 Total: -1.00 -28.90 310.84 -5.26 -34.16 By element: Atomic # 1 Polarization: 6.62 SS G_CDS: -2.84 Total: 3.78 kcal Atomic # 6 Polarization: 3.44 SS G_CDS: -2.28 Total: 1.16 kcal Atomic # 7 Polarization: -32.63 SS G_CDS: 0.23 Total: -32.40 kcal Atomic # 8 Polarization: -20.10 SS G_CDS: -0.13 Total: -20.22 kcal Atomic # 9 Polarization: -6.19 SS G_CDS: 0.11 Total: -6.08 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: -5.03 Total: 14.93 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -28.90 -5.26 -34.16 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000207788904.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.211 kcal (2) G-P(sol) polarization free energy of solvation -28.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds