Wall clock time and date at job start Tue Mar 31 2020 11:19:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36750 * 119.99404 * 2 1 4 4 H 1.08005 * 119.99845 * 203.24691 * 3 2 1 5 5 C 1.39095 * 120.00096 * 23.24748 * 3 2 1 6 6 N 1.31337 * 119.99945 * 14.70432 * 5 3 2 7 7 Si 1.86799 * 119.99633 * 194.70306 * 5 3 2 8 8 H 1.48499 * 109.47088 * 94.98144 * 7 5 3 9 9 H 1.48503 * 109.46998 * 214.97636 * 7 5 3 10 10 H 1.48502 * 109.47389 * 334.97918 * 7 5 3 11 11 C 1.34769 * 120.00445 * 179.97438 * 2 1 3 12 12 O 1.21783 * 120.00299 * 180.02562 * 11 2 1 13 13 C 1.41790 * 119.99821 * 0.02562 * 11 2 1 14 14 C 1.35162 * 119.99924 * 186.23361 * 13 11 2 15 15 C 1.46891 * 120.00088 * 8.88980 * 14 13 11 16 16 C 1.39960 * 120.21711 * 46.29338 * 15 14 13 17 17 C 1.37739 * 119.87844 * 179.97438 * 16 15 14 18 18 C 1.38576 * 120.32317 * 359.97438 * 17 16 15 19 19 C 1.38142 * 120.44030 * 0.02562 * 18 17 16 20 20 C 1.38591 * 120.11356 * 359.97438 * 19 18 17 21 21 O 1.35693 * 120.15806 * 180.27157 * 20 19 18 22 22 C 1.42891 * 117.00196 * 359.72876 * 21 20 19 23 23 F 1.39903 * 109.47242 * 59.99842 * 22 21 20 24 24 F 1.39910 * 109.47143 * 179.97438 * 22 21 20 25 25 F 1.39898 * 109.47239 * 299.99523 * 22 21 20 26 26 H 1.09005 * 109.47210 * 265.12990 * 1 2 3 27 27 H 1.08992 * 109.47376 * 25.13554 * 1 2 3 28 28 H 1.09007 * 109.46504 * 145.13287 * 1 2 3 29 29 H 0.97008 * 119.99879 * 179.97438 * 6 5 3 30 30 H 1.07998 * 120.00150 * 6.23164 * 13 11 2 31 31 H 1.08000 * 119.99903 * 188.88816 * 14 13 11 32 32 H 1.08002 * 120.05859 * 359.95713 * 16 15 14 33 33 H 1.08004 * 119.84090 * 179.97438 * 17 16 15 34 34 H 1.08004 * 119.78115 * 179.97438 * 18 17 16 35 35 H 1.07999 * 119.93988 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1486 1.1844 0.0000 4 1 3.1629 1.2224 -0.3692 5 6 1.5378 2.3400 0.4755 6 7 0.4340 2.2561 1.1823 7 14 2.2873 4.0112 0.1086 8 1 1.6408 4.5899 -1.0966 9 1 2.0731 4.9150 1.2673 10 1 3.7439 3.8575 -0.1366 11 6 2.1389 -1.1671 0.0005 12 8 3.3568 -1.1670 0.0010 13 6 1.4301 -2.3950 0.0005 14 6 2.0999 -3.5621 0.1281 15 6 3.5305 -3.5551 0.4614 16 6 4.0100 -2.7371 1.4909 17 6 5.3527 -2.7365 1.7979 18 6 6.2320 -3.5426 1.0926 19 6 5.7731 -4.3552 0.0741 20 6 4.4257 -4.3701 -0.2501 21 8 3.9732 -5.1720 -1.2467 22 6 4.9425 -5.9723 -1.9262 23 9 5.5666 -6.8264 -1.0106 24 9 4.3091 -6.7325 -2.9154 25 9 5.9008 -5.1422 -2.5176 26 1 -0.3634 -0.0872 1.0240 27 1 -0.3634 0.9303 -0.4365 28 1 -0.3632 -0.8433 -0.5875 29 1 0.0082 3.0621 1.5142 30 1 0.3549 -2.3979 -0.1014 31 1 1.5833 -4.4996 -0.0149 32 1 3.3284 -2.1072 2.0433 33 1 5.7221 -2.1047 2.5921 34 1 7.2832 -3.5349 1.3404 35 1 6.4656 -4.9799 -0.4705 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000207788904.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:49 Heat of formation + Delta-G solvation = -171.391822 kcal Electronic energy + Delta-G solvation = -26449.074767 eV Core-core repulsion = 21998.511489 eV Total energy + Delta-G solvation = -4450.563278 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.087 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -51.46756 -49.18229 -49.05323 -41.43812 -40.42919 -38.54073 -36.76984 -34.60477 -33.70365 -31.30531 -30.74563 -28.29048 -27.03482 -26.69567 -24.79716 -23.56190 -22.64988 -20.67584 -20.19110 -20.17370 -19.48043 -18.87332 -18.38726 -17.54307 -16.96112 -16.54570 -16.23904 -16.11926 -15.88517 -15.79036 -15.67183 -15.53041 -15.46588 -15.32927 -15.17947 -14.92643 -14.41417 -14.37415 -14.18211 -13.76878 -13.46938 -13.30787 -13.15264 -12.85028 -12.60933 -12.48650 -12.33902 -12.13754 -11.99171 -11.02754 -10.86245 -10.28654 -9.73170 -9.38640 -8.95820 -8.38381 -5.93813 -0.19155 0.38820 0.47173 0.91663 1.40786 1.41160 1.52972 1.78447 2.26898 2.58022 2.74849 2.76733 3.01091 3.20874 3.23902 3.66839 3.78800 4.01034 4.14140 4.26151 4.42777 4.47892 4.55303 4.74035 4.99038 5.00532 5.04621 5.20854 5.33770 5.36292 5.41058 5.44940 5.57051 5.69612 6.04262 6.13209 6.51102 7.18630 7.47091 8.10420 8.63545 Molecular weight = 315.09amu Principal moments of inertia in cm(-1) A = 0.021434 B = 0.003641 C = 0.003491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.005166 B = 7687.477564 C = 8017.795061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.115 3.885 2 N -0.449 5.449 3 C -0.335 4.335 4 H 0.073 0.927 5 C 0.000 4.000 6 N -0.888 5.888 7 Si 0.987 3.013 8 H -0.266 1.266 9 H -0.273 1.273 10 H -0.276 1.276 11 C 0.449 3.551 12 O -0.613 6.613 13 C -0.192 4.192 14 C -0.048 4.048 15 C -0.071 4.071 16 C -0.004 4.004 17 C -0.161 4.161 18 C -0.072 4.072 19 C -0.213 4.213 20 C 0.098 3.902 21 O -0.315 6.315 22 C 0.608 3.392 23 F -0.161 7.161 24 F -0.129 7.129 25 F -0.168 7.168 26 H 0.045 0.955 27 H 0.057 0.943 28 H 0.069 0.931 29 H 0.275 0.725 30 H 0.151 0.849 31 H 0.162 0.838 32 H 0.105 0.895 33 H 0.137 0.863 34 H 0.159 0.841 35 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.811 -14.815 -1.932 15.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.028 4.028 2 N -0.165 5.165 3 C -0.463 4.463 4 H 0.091 0.909 5 C -0.203 4.203 6 N -0.525 5.525 7 Si 0.811 3.189 8 H -0.191 1.191 9 H -0.198 1.198 10 H -0.200 1.200 11 C 0.243 3.757 12 O -0.502 6.502 13 C -0.213 4.213 14 C -0.069 4.069 15 C -0.072 4.072 16 C -0.023 4.023 17 C -0.179 4.179 18 C -0.090 4.090 19 C -0.231 4.231 20 C 0.056 3.944 21 O -0.235 6.235 22 C 0.517 3.483 23 F -0.143 7.143 24 F -0.110 7.110 25 F -0.150 7.150 26 H 0.064 0.936 27 H 0.076 0.924 28 H 0.087 0.913 29 H 0.085 0.915 30 H 0.169 0.831 31 H 0.180 0.820 32 H 0.123 0.877 33 H 0.155 0.845 34 H 0.176 0.824 35 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 5.031 -14.650 -1.930 15.609 hybrid contribution 0.206 1.044 -0.296 1.104 sum 5.236 -13.606 -2.226 14.748 Atomic orbital electron populations 1.21522 0.79668 1.00912 1.00691 1.43920 1.06728 1.05181 1.60650 1.19608 0.99733 0.85922 1.41063 0.90915 1.26080 0.96942 1.02882 0.94377 1.70037 1.19908 1.30844 1.31760 0.85011 0.78432 0.77165 0.78329 1.19147 1.19829 1.20039 1.17650 0.88048 0.85284 0.84758 1.90665 1.14689 1.87379 1.57507 1.22359 1.01332 0.92143 1.05428 1.22324 0.91602 0.98283 0.94704 1.18318 0.93658 0.97687 0.97532 1.20931 0.96370 0.91201 0.93774 1.21220 0.92979 1.01244 1.02500 1.21225 1.00863 0.93615 0.93307 1.21449 0.92838 1.05686 1.03163 1.18780 0.93727 0.92970 0.88919 1.86287 1.35091 1.54078 1.48080 1.19258 0.75561 0.76784 0.76674 1.93294 1.82624 1.71456 1.66908 1.93304 1.82730 1.74590 1.60398 1.93296 1.64804 1.72350 1.84586 0.93634 0.92394 0.91293 0.91487 0.83135 0.82044 0.87666 0.84509 0.82383 0.83893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 4.99 8.32 127.77 1.06 6.06 16 2 N -0.45 -22.94 3.00 -668.87 -2.01 -24.95 16 3 C -0.33 -18.74 9.25 84.13 0.78 -17.96 16 4 H 0.07 4.38 7.43 -2.91 -0.02 4.36 16 5 C 0.00 0.01 5.00 84.97 0.42 0.43 16 6 N -0.89 -46.13 10.88 21.69 0.24 -45.89 16 7 Si 0.99 41.77 29.58 68.60 2.03 43.80 16 8 H -0.27 -10.75 7.11 99.48 0.71 -10.05 16 9 H -0.27 -11.07 7.11 99.48 0.71 -10.37 16 10 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 11 C 0.45 21.73 6.58 85.12 0.56 22.29 16 12 O -0.61 -32.83 11.57 -4.61 -0.05 -32.88 16 13 C -0.19 -7.18 9.03 22.44 0.20 -6.98 16 14 C -0.05 -1.60 9.35 23.83 0.22 -1.38 16 15 C -0.07 -2.60 4.47 -20.06 -0.09 -2.69 16 16 C 0.00 -0.15 6.59 22.57 0.15 -0.01 16 17 C -0.16 -5.27 10.02 22.23 0.22 -5.05 16 18 C -0.07 -2.03 10.03 22.33 0.22 -1.81 16 19 C -0.21 -6.26 8.25 22.33 0.18 -6.08 16 20 C 0.10 3.25 6.50 22.89 0.15 3.40 16 21 O -0.32 -9.42 9.83 -90.13 -0.89 -10.30 16 22 C 0.61 14.93 3.42 113.37 0.39 15.32 16 23 F -0.16 -3.59 15.55 44.97 0.70 -2.89 16 24 F -0.13 -2.88 17.53 44.97 0.79 -2.09 16 25 F -0.17 -4.32 15.58 44.97 0.70 -3.62 16 26 H 0.05 2.01 7.87 -2.38 -0.02 1.99 16 27 H 0.06 2.68 6.72 -2.39 -0.02 2.66 16 28 H 0.07 2.39 6.29 -2.38 -0.01 2.38 16 29 H 0.28 13.36 8.31 -92.70 -0.77 12.59 16 30 H 0.15 4.62 6.14 -2.91 -0.02 4.60 16 31 H 0.16 4.10 8.06 -2.91 -0.02 4.08 16 32 H 0.11 4.41 7.14 -2.91 -0.02 4.39 16 33 H 0.14 3.92 8.06 -2.91 -0.02 3.90 16 34 H 0.16 3.23 8.06 -2.91 -0.02 3.20 16 35 H 0.14 3.57 5.10 -2.91 -0.01 3.55 16 Total: -1.00 -64.35 310.84 7.14 -57.21 By element: Atomic # 1 Polarization: 14.92 SS G_CDS: 1.16 Total: 16.08 kcal Atomic # 6 Polarization: 1.07 SS G_CDS: 4.48 Total: 5.55 kcal Atomic # 7 Polarization: -69.07 SS G_CDS: -1.77 Total: -70.85 kcal Atomic # 8 Polarization: -42.24 SS G_CDS: -0.94 Total: -43.18 kcal Atomic # 9 Polarization: -10.79 SS G_CDS: 2.19 Total: -8.60 kcal Atomic # 14 Polarization: 41.77 SS G_CDS: 2.03 Total: 43.80 kcal Total: -64.35 7.14 -57.21 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000207788904.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.185 kcal (2) G-P(sol) polarization free energy of solvation -64.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds