Wall clock time and date at job start Tue Mar 31 2020 11:09:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46497 * 109.47021 * 119.99638 * 2 1 3 13 13 C 1.46497 * 120.00073 * 60.00310 * 12 2 1 14 14 C 1.34781 * 119.99894 * 240.00308 * 12 2 1 15 15 O 1.21280 * 120.00291 * 359.97438 * 14 12 2 16 16 C 1.50699 * 119.99910 * 180.02562 * 14 12 2 17 17 S 1.81404 * 109.47155 * 179.97438 * 16 14 12 18 18 C 1.76197 * 102.99983 * 179.97438 * 17 16 14 19 19 C 1.38957 * 120.04753 * 179.97438 * 18 17 16 20 20 C 1.38112 * 119.99444 * 179.97438 * 19 18 17 21 21 C 1.38437 * 120.07664 * 0.02562 * 20 19 18 22 22 F 1.35099 * 119.95441 * 179.97438 * 21 20 19 23 23 C 1.38676 * 120.08855 * 359.97438 * 21 20 19 24 24 F 1.35101 * 119.99208 * 180.02562 * 23 21 20 25 25 C 1.38312 * 120.01131 * 359.74123 * 23 21 20 26 26 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 27 27 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 29 29 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 30 30 H 1.09001 * 109.46905 * 89.99959 * 13 12 2 31 31 H 1.09005 * 109.47144 * 209.99900 * 13 12 2 32 32 H 1.08993 * 109.47302 * 330.00087 * 13 12 2 33 33 H 1.09005 * 109.46708 * 299.99547 * 16 14 12 34 34 H 1.09000 * 109.47504 * 59.99304 * 16 14 12 35 35 H 1.08002 * 120.00183 * 0.02562 * 19 18 17 36 36 H 1.07998 * 119.96079 * 180.02562 * 20 19 18 37 37 H 1.08003 * 120.03603 * 180.27691 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 1.8270 -0.4201 -5.2204 10 1 3.8076 -1.1190 -4.0076 11 1 1.8282 -2.5199 -4.0080 12 7 2.0183 -0.6905 1.1962 13 6 1.6644 -2.0931 1.4281 14 6 2.7931 -0.0354 2.0834 15 8 3.0865 1.1256 1.8912 16 6 3.2959 -0.7459 3.3136 17 16 4.3041 0.3942 4.3007 18 6 4.7940 -0.5965 5.6730 19 6 5.5967 -0.0559 6.6701 20 6 5.9796 -0.8333 7.7455 21 6 5.5650 -2.1513 7.8314 22 9 5.9414 -2.9096 8.8842 23 6 4.7638 -2.6942 6.8382 24 9 4.3598 -3.9805 6.9242 25 6 4.3733 -1.9173 5.7626 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 0.7088 1.1611 -3.4845 30 1 2.4158 -2.7376 0.9718 31 1 1.6238 -2.2851 2.5003 32 1 0.6905 -2.3002 0.9847 33 1 2.4483 -1.0888 3.9070 34 1 3.9016 -1.6021 3.0167 35 1 5.9205 0.9723 6.6045 36 1 6.6032 -0.4124 8.5204 37 1 3.7457 -2.3384 4.9911 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264072469.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:09:37 Heat of formation + Delta-G solvation = -109.399432 kcal Electronic energy + Delta-G solvation = -23001.185885 eV Core-core repulsion = 19119.523975 eV Total energy + Delta-G solvation = -3881.661910 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.085 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -50.54125 -49.61775 -40.77109 -39.78411 -37.21944 -34.90056 -32.72375 -31.88118 -31.43122 -29.92145 -27.65521 -27.27904 -24.43951 -24.16976 -23.07635 -20.33340 -19.42245 -18.63709 -18.54787 -18.19136 -18.03440 -17.38881 -17.22318 -16.88673 -16.73576 -16.05938 -16.03956 -15.72503 -15.28368 -15.08262 -14.78797 -14.50287 -14.34024 -14.02588 -13.81659 -13.53667 -13.39766 -13.33657 -12.99995 -12.93514 -12.70694 -12.63297 -12.37426 -12.18444 -12.13204 -11.33279 -11.20684 -10.85355 -10.68338 -10.51712 -10.12050 -9.41058 -8.51391 -8.15641 -6.32279 -0.28524 -0.10387 0.15798 1.20804 1.41881 1.43912 1.51049 1.63096 2.19592 2.24800 2.45521 2.76268 3.12807 3.24701 3.49561 3.51010 3.86902 3.90115 3.95609 4.10582 4.35158 4.42489 4.63259 4.67364 4.77207 4.79125 4.88283 4.92874 5.00262 5.02193 5.05074 5.44381 5.56547 5.60494 5.64488 5.99995 6.14213 6.70398 6.74981 7.21683 7.41373 8.88501 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.025439 B = 0.002744 C = 0.002640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.420918 B =10201.806605 C =10602.080153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.263 3.737 3 H 0.011 0.989 4 C -0.540 4.540 5 H 0.062 0.938 6 C 0.016 3.984 7 N -0.917 5.917 8 Si 0.963 3.037 9 H -0.285 1.285 10 H -0.277 1.277 11 H -0.262 1.262 12 N -0.593 5.593 13 C 0.076 3.924 14 C 0.511 3.489 15 O -0.586 6.586 16 C -0.138 4.138 17 S -0.042 6.042 18 C -0.082 4.082 19 C -0.079 4.079 20 C -0.090 4.090 21 C 0.043 3.957 22 F -0.137 7.137 23 C 0.076 3.924 24 F -0.136 7.136 25 C -0.148 4.148 26 H 0.067 0.933 27 H 0.049 0.951 28 H 0.022 0.978 29 H 0.265 0.735 30 H 0.060 0.940 31 H 0.098 0.902 32 H 0.073 0.927 33 H 0.147 0.853 34 H 0.140 0.860 35 H 0.165 0.835 36 H 0.181 0.819 37 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.911 -7.602 20.201 22.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.161 3.839 3 H 0.029 0.971 4 C -0.579 4.579 5 H 0.080 0.920 6 C -0.184 4.184 7 N -0.556 5.556 8 Si 0.788 3.212 9 H -0.210 1.210 10 H -0.203 1.203 11 H -0.187 1.187 12 N -0.323 5.323 13 C -0.066 4.066 14 C 0.298 3.702 15 O -0.467 6.467 16 C -0.289 4.289 17 S 0.203 5.797 18 C -0.196 4.196 19 C -0.103 4.103 20 C -0.111 4.111 21 C 0.020 3.980 22 F -0.116 7.116 23 C 0.054 3.946 24 F -0.115 7.115 25 C -0.174 4.174 26 H 0.086 0.914 27 H 0.068 0.932 28 H 0.041 0.959 29 H 0.074 0.926 30 H 0.079 0.921 31 H 0.116 0.884 32 H 0.092 0.908 33 H 0.164 0.836 34 H 0.158 0.842 35 H 0.183 0.817 36 H 0.199 0.801 37 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 7.122 -5.796 19.586 21.631 hybrid contribution -0.253 -1.944 -0.720 2.088 sum 6.869 -7.739 18.866 21.518 Atomic orbital electron populations 1.21897 0.96991 1.00287 1.00116 1.18566 0.91700 0.92266 0.81364 0.97075 1.21551 1.32065 1.13177 0.91101 0.91977 1.25718 0.95047 0.95609 1.01999 1.70011 1.37190 1.23842 1.24529 0.85535 0.78429 0.79004 0.78214 1.21044 1.20263 1.18700 1.48158 1.48485 1.13561 1.22125 1.21929 1.02065 0.80082 1.02520 1.20168 0.78993 0.86552 0.84487 1.90689 1.59541 1.18981 1.77534 1.23924 1.04902 1.02600 0.97458 1.86644 1.60341 1.15710 1.16968 1.22076 1.01251 0.96280 1.00001 1.20971 0.96256 1.01653 0.91405 1.21291 0.99901 0.90054 0.99804 1.17895 1.02072 0.91613 0.86467 1.91510 1.89849 1.75700 1.54521 1.17673 1.00156 0.79878 0.96889 1.91519 1.88986 1.34720 1.96226 1.21213 1.03904 0.93221 0.99026 0.91389 0.93162 0.95908 0.92614 0.92132 0.88374 0.90790 0.83556 0.84188 0.81710 0.80126 0.82390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.24 8.95 71.98 0.64 -5.60 16 2 C 0.26 13.19 2.64 44.24 0.12 13.30 16 3 H 0.01 0.68 6.90 -2.38 -0.02 0.67 16 4 C -0.54 -28.53 8.37 25.60 0.21 -28.32 16 5 H 0.06 3.16 7.65 -2.91 -0.02 3.13 16 6 C 0.02 0.86 5.30 84.66 0.45 1.31 16 7 N -0.92 -52.05 11.32 21.45 0.24 -51.81 16 8 Si 0.96 42.21 29.54 68.60 2.03 44.24 16 9 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 10 H -0.28 -12.09 7.11 99.48 0.71 -11.39 16 11 H -0.26 -10.83 7.11 99.48 0.71 -10.13 16 12 N -0.59 -23.22 2.75 -826.81 -2.28 -25.50 16 13 C 0.08 2.10 9.48 127.77 1.21 3.32 16 14 C 0.51 19.37 7.69 87.66 0.67 20.05 16 15 O -0.59 -28.18 15.19 -3.03 -0.05 -28.22 16 16 C -0.14 -3.35 3.37 71.24 0.24 -3.11 16 17 S -0.04 -1.06 21.06 -56.49 -1.19 -2.25 16 18 C -0.08 -1.53 6.11 22.60 0.14 -1.39 16 19 C -0.08 -1.15 9.79 22.41 0.22 -0.93 16 20 C -0.09 -1.16 10.02 22.29 0.22 -0.94 16 21 C 0.04 0.76 7.30 22.42 0.16 0.92 16 22 F -0.14 -2.72 17.18 44.97 0.77 -1.95 16 23 C 0.08 1.47 7.30 22.39 0.16 1.64 16 24 F -0.14 -2.95 17.18 44.97 0.77 -2.18 16 25 C -0.15 -2.64 9.34 22.45 0.21 -2.43 16 26 H 0.07 3.55 6.07 -2.39 -0.01 3.54 16 27 H 0.05 2.09 6.66 -2.39 -0.02 2.07 16 28 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.26 14.30 8.31 -92.71 -0.77 13.53 16 30 H 0.06 1.59 8.14 -2.39 -0.02 1.58 16 31 H 0.10 1.77 6.44 -2.38 -0.02 1.75 16 32 H 0.07 2.12 6.43 -2.39 -0.02 2.10 16 33 H 0.15 2.57 6.99 -2.39 -0.02 2.55 16 34 H 0.14 2.69 7.73 -2.39 -0.02 2.68 16 35 H 0.17 1.79 8.06 -2.91 -0.02 1.77 16 36 H 0.18 1.19 8.06 -2.91 -0.02 1.16 16 37 H 0.16 2.29 5.88 -2.91 -0.02 2.27 16 Total: -1.00 -69.35 332.64 6.08 -63.27 By element: Atomic # 1 Polarization: 5.46 SS G_CDS: 1.11 Total: 6.57 kcal Atomic # 6 Polarization: -6.84 SS G_CDS: 4.67 Total: -2.17 kcal Atomic # 7 Polarization: -75.28 SS G_CDS: -2.03 Total: -77.31 kcal Atomic # 8 Polarization: -28.18 SS G_CDS: -0.05 Total: -28.22 kcal Atomic # 9 Polarization: -5.68 SS G_CDS: 1.54 Total: -4.13 kcal Atomic # 14 Polarization: 42.21 SS G_CDS: 2.03 Total: 44.24 kcal Atomic # 16 Polarization: -1.06 SS G_CDS: -1.19 Total: -2.25 kcal Total: -69.35 6.08 -63.27 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264072469.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.129 kcal (2) G-P(sol) polarization free energy of solvation -69.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds