Wall clock time and date at job start Tue Mar 31 2020 10:38:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52989 * 109.47561 * 2 1 4 4 C 1.53010 * 109.46983 * 120.00189 * 2 1 3 5 5 C 1.52995 * 109.47058 * 174.99591 * 4 2 1 6 6 N 1.46504 * 109.47136 * 179.97438 * 5 4 2 7 7 C 1.46495 * 119.99964 * 270.00208 * 6 5 4 8 8 C 1.50701 * 109.47288 * 262.22049 * 7 6 5 9 9 H 1.08001 * 119.99480 * 359.97438 * 8 7 6 10 10 C 1.37870 * 120.00181 * 180.02562 * 8 7 6 11 11 N 1.31512 * 120.00201 * 359.97438 * 10 8 7 12 12 Si 1.86808 * 120.00241 * 180.02562 * 10 8 7 13 13 H 1.48506 * 109.46656 * 359.97438 * 12 10 8 14 14 H 1.48501 * 109.47029 * 119.99656 * 12 10 8 15 15 H 1.48500 * 109.47104 * 239.99777 * 12 10 8 16 16 C 1.34776 * 119.99666 * 90.00144 * 6 5 4 17 17 O 1.21721 * 119.99879 * 1.93448 * 16 6 5 18 18 C 1.46465 * 119.99989 * 181.93863 * 16 6 5 19 19 C 1.36694 * 125.44934 * 172.12692 * 18 16 6 20 20 C 1.37402 * 113.31525 * 179.97438 * 19 18 16 21 21 C 1.34016 * 115.07549 * 0.02562 * 20 19 18 22 22 Cl 1.73598 * 124.53474 * 180.02562 * 21 20 19 23 23 S 1.70621 * 110.93647 * 359.97438 * 21 20 19 24 24 H 1.08998 * 109.46568 * 300.00720 * 1 2 3 25 25 H 1.08998 * 109.46553 * 59.99620 * 1 2 3 26 26 H 1.08992 * 109.47089 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47010 * 239.99246 * 2 1 3 28 28 H 1.08998 * 109.47768 * 60.00014 * 3 2 1 29 29 H 1.09001 * 109.47484 * 180.02562 * 3 2 1 30 30 H 1.09008 * 109.47448 * 299.99633 * 3 2 1 31 31 H 1.08995 * 109.46802 * 54.99430 * 4 2 1 32 32 H 1.08997 * 109.46706 * 294.99688 * 4 2 1 33 33 H 1.09007 * 109.47241 * 59.99865 * 5 4 2 34 34 H 1.08997 * 109.47441 * 299.99646 * 5 4 2 35 35 H 1.08996 * 109.47430 * 22.22633 * 7 6 5 36 36 H 1.09005 * 109.46793 * 142.22435 * 7 6 5 37 37 H 0.96998 * 120.00755 * 180.02562 * 11 10 8 38 38 H 1.07994 * 123.34226 * 0.25110 * 19 18 16 39 39 H 1.08001 * 122.46543 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5648 -0.8312 1.1880 6 7 4.0532 -1.5214 2.3845 7 6 4.4016 -0.7532 3.5822 8 6 5.8909 -0.5253 3.6172 9 1 6.5154 -0.9143 2.8266 10 6 6.4563 0.1787 4.6591 11 7 5.6959 0.6519 5.6222 12 14 8.3023 0.4618 4.7022 13 1 8.9273 -0.1669 3.5108 14 1 8.5796 1.9206 4.6956 15 1 8.8673 -0.1440 5.9347 16 6 4.1818 -2.8630 2.3832 17 8 3.9259 -3.4979 1.3767 18 6 4.6295 -3.5569 3.5928 19 6 4.6539 -4.9126 3.7660 20 6 5.1216 -5.2948 5.0002 21 6 5.4689 -4.2874 5.8129 22 17 6.0885 -4.4899 7.4219 23 16 5.2220 -2.7792 5.0543 24 1 -0.3632 0.5140 0.8899 25 1 -0.3632 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.8934 -0.5140 -0.8899 28 1 1.6769 1.9563 0.8899 29 1 3.1301 1.4423 -0.0005 30 1 1.6769 1.9563 -0.8901 31 1 1.6053 -1.7198 1.2952 32 1 1.7517 -0.1584 2.1370 33 1 3.9995 0.1673 1.1421 34 1 3.8531 -1.3942 0.3003 35 1 3.8875 0.2076 3.5600 36 1 4.0979 -1.3074 4.4704 37 1 6.0935 1.1475 6.3550 38 1 4.3411 -5.6137 3.0065 39 1 5.2026 -6.3309 5.2940 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264097368.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:38:59 Heat of formation + Delta-G solvation = -29.266815 kcal Electronic energy + Delta-G solvation = -22207.457875 eV Core-core repulsion = 18881.067456 eV Total energy + Delta-G solvation = -3326.390419 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 315.080 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.28858 -37.28212 -36.51029 -35.81381 -34.92598 -32.86020 -30.11358 -28.30932 -27.28423 -26.99726 -24.51716 -23.38648 -22.75343 -20.10830 -19.69484 -18.50872 -17.36182 -16.78253 -15.84230 -15.51951 -14.99086 -14.81291 -14.52643 -14.30671 -13.68175 -13.50515 -13.00444 -12.79240 -12.77600 -12.57026 -12.48617 -12.26737 -12.12053 -11.72567 -11.69351 -11.27113 -11.09620 -10.95086 -10.92191 -10.77059 -10.66046 -10.51107 -10.38438 -10.19450 -9.95409 -9.35479 -9.27305 -8.88355 -8.14063 -7.89202 -7.65941 -6.46440 -4.50073 1.11344 1.95370 2.69984 2.86428 2.89368 3.10504 3.20385 3.24106 3.77121 3.89426 4.15268 4.88015 5.01984 5.06449 5.10636 5.31960 5.61270 5.69380 5.77213 5.79589 5.85146 5.91233 5.95361 5.96818 6.05555 6.18930 6.28464 6.34180 6.40338 6.42126 6.55773 6.62423 6.66881 6.79916 6.83670 7.31478 7.50285 7.65195 8.10484 8.51889 8.86222 9.11103 10.57088 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.012118 B = 0.005403 C = 0.004117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2310.020744 B = 5181.374353 C = 6798.777216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.093 4.093 3 C -0.150 4.150 4 C -0.129 4.129 5 C 0.122 3.878 6 N -0.596 5.596 7 C 0.227 3.773 8 C -0.540 4.540 9 H 0.072 0.928 10 C 0.077 3.923 11 N -0.872 5.872 12 Si 0.890 3.110 13 H -0.267 1.267 14 H -0.278 1.278 15 H -0.275 1.275 16 C 0.591 3.409 17 O -0.563 6.563 18 C -0.289 4.289 19 C -0.077 4.077 20 C -0.160 4.160 21 C -0.256 4.256 22 Cl -0.047 7.047 23 S 0.448 5.552 24 H 0.053 0.947 25 H 0.051 0.949 26 H 0.052 0.948 27 H 0.069 0.931 28 H 0.055 0.945 29 H 0.060 0.940 30 H 0.049 0.951 31 H 0.062 0.938 32 H 0.064 0.936 33 H 0.081 0.919 34 H 0.075 0.925 35 H 0.056 0.944 36 H 0.039 0.961 37 H 0.272 0.728 38 H 0.143 0.857 39 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.749 -1.927 -2.550 5.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.112 4.112 3 C -0.207 4.207 4 C -0.168 4.168 5 C -0.001 4.001 6 N -0.325 5.325 7 C 0.104 3.896 8 C -0.583 4.583 9 H 0.090 0.910 10 C -0.130 4.130 11 N -0.507 5.507 12 Si 0.716 3.284 13 H -0.191 1.191 14 H -0.203 1.203 15 H -0.201 1.201 16 C 0.379 3.621 17 O -0.445 6.445 18 C -0.411 4.411 19 C -0.111 4.111 20 C -0.193 4.193 21 C -0.402 4.402 22 Cl -0.018 7.018 23 S 0.725 5.275 24 H 0.072 0.928 25 H 0.070 0.930 26 H 0.071 0.929 27 H 0.087 0.913 28 H 0.074 0.926 29 H 0.079 0.921 30 H 0.068 0.932 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.099 0.901 34 H 0.093 0.907 35 H 0.074 0.926 36 H 0.055 0.945 37 H 0.082 0.918 38 H 0.161 0.839 39 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -4.591 -0.698 -2.193 5.135 hybrid contribution 0.955 -1.425 0.066 1.717 sum -3.636 -2.123 -2.127 4.717 Atomic orbital electron populations 1.21822 0.95533 1.01508 1.01375 1.21044 0.95436 0.96327 0.98425 1.21907 1.01576 0.95843 1.01378 1.22017 0.96338 1.00675 0.97753 1.21405 0.93084 0.97587 0.88046 1.48043 1.63168 1.05600 1.15730 1.19663 0.96813 0.92299 0.80786 1.21609 0.91943 1.35737 1.08988 0.90971 1.24936 0.98948 0.94233 0.94914 1.69900 1.35809 1.34367 1.10665 0.86520 0.84432 0.78521 0.78958 1.19103 1.20335 1.20090 1.16927 0.77073 0.81922 0.86133 1.90712 1.53486 1.66608 1.33715 1.24832 1.16072 0.98378 1.01848 1.20215 1.00399 0.93806 0.96652 1.19692 1.06129 0.99455 0.93990 1.27174 1.11590 1.08599 0.92798 1.98299 1.85853 1.97672 1.20010 1.86513 1.49167 0.93056 0.98778 0.92780 0.93034 0.92866 0.91256 0.92596 0.92119 0.93198 0.91875 0.91717 0.90099 0.90703 0.92559 0.94461 0.91786 0.83940 0.85302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.58 9.19 37.16 0.34 -1.24 16 2 C -0.09 -1.15 2.92 -90.62 -0.26 -1.41 16 3 C -0.15 -1.73 8.95 37.15 0.33 -1.40 16 4 C -0.13 -1.94 5.01 -26.73 -0.13 -2.08 16 5 C 0.12 2.11 5.14 -4.04 -0.02 2.09 16 6 N -0.60 -12.14 2.48 -176.68 -0.44 -12.58 16 7 C 0.23 4.94 4.74 -5.20 -0.02 4.92 16 8 C -0.54 -12.63 6.94 -34.44 -0.24 -12.86 16 9 H 0.07 1.77 7.81 -52.49 -0.41 1.36 16 10 C 0.08 1.81 5.01 -17.82 -0.09 1.72 16 11 N -0.87 -21.10 13.29 55.43 0.74 -20.37 16 12 Si 0.89 18.98 29.54 -169.99 -5.02 13.96 16 13 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 14 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 15 H -0.28 -5.88 7.11 56.52 0.40 -5.47 16 16 C 0.59 12.77 7.56 -12.95 -0.10 12.67 16 17 O -0.56 -12.98 16.42 5.17 0.08 -12.90 16 18 C -0.29 -5.93 6.23 -36.83 -0.23 -6.16 16 19 C -0.08 -1.41 10.02 -40.44 -0.41 -1.82 16 20 C -0.16 -2.78 10.08 -41.37 -0.42 -3.20 16 21 C -0.26 -4.74 6.82 29.25 0.20 -4.54 16 22 Cl -0.05 -0.78 29.27 -51.86 -1.52 -2.30 16 23 S 0.45 9.11 15.84 -107.50 -1.70 7.41 16 24 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.06 0.73 6.57 -51.93 -0.34 0.39 16 30 H 0.05 0.50 8.14 -51.92 -0.42 0.08 16 31 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 32 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.08 1.35 6.50 -51.93 -0.34 1.01 16 34 H 0.07 1.34 7.39 -51.93 -0.38 0.95 16 35 H 0.06 1.25 8.01 -51.93 -0.42 0.84 16 36 H 0.04 0.85 4.50 -22.34 -0.10 0.75 16 37 H 0.27 6.31 8.31 -40.82 -0.34 5.97 16 38 H 0.14 2.44 8.06 -52.49 -0.42 2.01 16 39 H 0.13 1.93 8.06 -52.49 -0.42 1.51 16 LS Contribution 347.10 15.07 5.23 5.23 Total: -1.00 -25.06 347.10 -9.03 -34.08 By element: Atomic # 1 Polarization: 6.13 SS G_CDS: -5.35 Total: 0.77 kcal Atomic # 6 Polarization: -12.26 SS G_CDS: -1.05 Total: -13.31 kcal Atomic # 7 Polarization: -33.25 SS G_CDS: 0.30 Total: -32.95 kcal Atomic # 8 Polarization: -12.98 SS G_CDS: 0.08 Total: -12.90 kcal Atomic # 14 Polarization: 18.98 SS G_CDS: -5.02 Total: 13.96 kcal Atomic # 16 Polarization: 9.11 SS G_CDS: -1.70 Total: 7.41 kcal Atomic # 17 Polarization: -0.78 SS G_CDS: -1.52 Total: -2.30 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -25.06 -9.03 -34.08 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264097368.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.817 kcal (2) G-P(sol) polarization free energy of solvation -25.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds