Wall clock time and date at job start Tue Mar 31 2020 10:38:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52989 * 109.47561 * 2 1 4 4 C 1.53010 * 109.46983 * 120.00189 * 2 1 3 5 5 C 1.52995 * 109.47058 * 174.99591 * 4 2 1 6 6 N 1.46504 * 109.47136 * 179.97438 * 5 4 2 7 7 C 1.46495 * 119.99964 * 270.00208 * 6 5 4 8 8 C 1.50701 * 109.47288 * 262.22049 * 7 6 5 9 9 H 1.08001 * 119.99480 * 359.97438 * 8 7 6 10 10 C 1.37870 * 120.00181 * 180.02562 * 8 7 6 11 11 N 1.31512 * 120.00201 * 359.97438 * 10 8 7 12 12 Si 1.86808 * 120.00241 * 180.02562 * 10 8 7 13 13 H 1.48506 * 109.46656 * 359.97438 * 12 10 8 14 14 H 1.48501 * 109.47029 * 119.99656 * 12 10 8 15 15 H 1.48500 * 109.47104 * 239.99777 * 12 10 8 16 16 C 1.34776 * 119.99666 * 90.00144 * 6 5 4 17 17 O 1.21721 * 119.99879 * 1.93448 * 16 6 5 18 18 C 1.46465 * 119.99989 * 181.93863 * 16 6 5 19 19 C 1.36694 * 125.44934 * 172.12692 * 18 16 6 20 20 C 1.37402 * 113.31525 * 179.97438 * 19 18 16 21 21 C 1.34016 * 115.07549 * 0.02562 * 20 19 18 22 22 Cl 1.73598 * 124.53474 * 180.02562 * 21 20 19 23 23 S 1.70621 * 110.93647 * 359.97438 * 21 20 19 24 24 H 1.08998 * 109.46568 * 300.00720 * 1 2 3 25 25 H 1.08998 * 109.46553 * 59.99620 * 1 2 3 26 26 H 1.08992 * 109.47089 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47010 * 239.99246 * 2 1 3 28 28 H 1.08998 * 109.47768 * 60.00014 * 3 2 1 29 29 H 1.09001 * 109.47484 * 180.02562 * 3 2 1 30 30 H 1.09008 * 109.47448 * 299.99633 * 3 2 1 31 31 H 1.08995 * 109.46802 * 54.99430 * 4 2 1 32 32 H 1.08997 * 109.46706 * 294.99688 * 4 2 1 33 33 H 1.09007 * 109.47241 * 59.99865 * 5 4 2 34 34 H 1.08997 * 109.47441 * 299.99646 * 5 4 2 35 35 H 1.08996 * 109.47430 * 22.22633 * 7 6 5 36 36 H 1.09005 * 109.46793 * 142.22435 * 7 6 5 37 37 H 0.96998 * 120.00755 * 180.02562 * 11 10 8 38 38 H 1.07994 * 123.34226 * 0.25110 * 19 18 16 39 39 H 1.08001 * 122.46543 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5648 -0.8312 1.1880 6 7 4.0532 -1.5214 2.3845 7 6 4.4016 -0.7532 3.5822 8 6 5.8909 -0.5253 3.6172 9 1 6.5154 -0.9143 2.8266 10 6 6.4563 0.1787 4.6591 11 7 5.6959 0.6519 5.6222 12 14 8.3023 0.4618 4.7022 13 1 8.9273 -0.1669 3.5108 14 1 8.5796 1.9206 4.6956 15 1 8.8673 -0.1440 5.9347 16 6 4.1818 -2.8630 2.3832 17 8 3.9259 -3.4979 1.3767 18 6 4.6295 -3.5569 3.5928 19 6 4.6539 -4.9126 3.7660 20 6 5.1216 -5.2948 5.0002 21 6 5.4689 -4.2874 5.8129 22 17 6.0885 -4.4899 7.4219 23 16 5.2220 -2.7792 5.0543 24 1 -0.3632 0.5140 0.8899 25 1 -0.3632 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.8934 -0.5140 -0.8899 28 1 1.6769 1.9563 0.8899 29 1 3.1301 1.4423 -0.0005 30 1 1.6769 1.9563 -0.8901 31 1 1.6053 -1.7198 1.2952 32 1 1.7517 -0.1584 2.1370 33 1 3.9995 0.1673 1.1421 34 1 3.8531 -1.3942 0.3003 35 1 3.8875 0.2076 3.5600 36 1 4.0979 -1.3074 4.4704 37 1 6.0935 1.1475 6.3550 38 1 4.3411 -5.6137 3.0065 39 1 5.2026 -6.3309 5.2940 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264097368.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:38:58 Heat of formation + Delta-G solvation = -39.420145 kcal Electronic energy + Delta-G solvation = -22207.898157 eV Core-core repulsion = 18881.067456 eV Total energy + Delta-G solvation = -3326.830700 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 315.080 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.91406 -38.73285 -37.80373 -37.22847 -36.51862 -34.58904 -31.54285 -29.83889 -28.86335 -27.96314 -25.98189 -25.10158 -24.18477 -21.54149 -20.84206 -20.04287 -19.02418 -18.54830 -17.42777 -17.04636 -16.46098 -16.30753 -15.95555 -15.81503 -14.84827 -14.81820 -14.43904 -14.43057 -14.25452 -14.20149 -13.83834 -13.70359 -13.23697 -13.12977 -12.94504 -12.74519 -12.69647 -12.37267 -12.33118 -12.14985 -12.03779 -11.88107 -11.65035 -11.54671 -11.40890 -11.02832 -10.82309 -10.65735 -9.73960 -9.43867 -9.25526 -8.26759 -6.34854 -0.42457 0.42683 1.16657 1.36876 1.39157 1.41263 1.46916 1.53457 2.18506 2.27024 2.41429 3.05721 3.69655 3.94522 4.00824 4.09133 4.32767 4.34111 4.49908 4.58559 4.66258 4.68755 4.81217 4.84898 4.92930 4.96950 5.04069 5.06861 5.12386 5.15465 5.18699 5.33681 5.38935 5.49716 5.53870 5.60298 5.75805 5.86898 6.41204 6.69886 7.17475 7.30273 8.76783 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.012118 B = 0.005403 C = 0.004117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2310.020744 B = 5181.374353 C = 6798.777216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.090 4.090 3 C -0.148 4.148 4 C -0.118 4.118 5 C 0.118 3.882 6 N -0.596 5.596 7 C 0.237 3.763 8 C -0.544 4.544 9 H 0.055 0.945 10 C 0.052 3.948 11 N -0.892 5.892 12 Si 0.929 3.071 13 H -0.272 1.272 14 H -0.273 1.273 15 H -0.273 1.273 16 C 0.584 3.416 17 O -0.585 6.585 18 C -0.309 4.309 19 C -0.064 4.064 20 C -0.150 4.150 21 C -0.251 4.251 22 Cl -0.028 7.028 23 S 0.404 5.596 24 H 0.054 0.946 25 H 0.069 0.931 26 H 0.050 0.950 27 H 0.071 0.929 28 H 0.053 0.947 29 H 0.051 0.949 30 H 0.068 0.932 31 H 0.048 0.952 32 H 0.060 0.940 33 H 0.085 0.915 34 H 0.068 0.932 35 H 0.047 0.953 36 H 0.038 0.962 37 H 0.274 0.726 38 H 0.159 0.841 39 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.867 -2.575 -2.506 6.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.109 4.109 3 C -0.205 4.205 4 C -0.157 4.157 5 C -0.004 4.004 6 N -0.325 5.325 7 C 0.114 3.886 8 C -0.586 4.586 9 H 0.074 0.926 10 C -0.153 4.153 11 N -0.528 5.528 12 Si 0.755 3.245 13 H -0.197 1.197 14 H -0.199 1.199 15 H -0.198 1.198 16 C 0.374 3.626 17 O -0.469 6.469 18 C -0.431 4.431 19 C -0.099 4.099 20 C -0.182 4.182 21 C -0.397 4.397 22 Cl 0.000 7.000 23 S 0.679 5.321 24 H 0.073 0.927 25 H 0.088 0.912 26 H 0.069 0.931 27 H 0.089 0.911 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.087 0.913 31 H 0.067 0.933 32 H 0.078 0.922 33 H 0.104 0.896 34 H 0.087 0.913 35 H 0.065 0.935 36 H 0.054 0.946 37 H 0.084 0.916 38 H 0.176 0.824 39 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -4.711 -1.311 -2.157 5.345 hybrid contribution 0.987 -1.351 0.095 1.676 sum -3.724 -2.662 -2.062 5.020 Atomic orbital electron populations 1.21795 0.94099 1.01716 1.02324 1.21032 0.96599 0.96447 0.96800 1.21887 1.01020 0.95357 1.02226 1.21914 0.94403 1.00197 0.99189 1.21579 0.94731 0.97319 0.86736 1.48124 1.62776 1.05491 1.16121 1.19463 0.95920 0.91888 0.81362 1.21533 0.92467 1.35989 1.08632 0.92640 1.25315 1.01216 0.94095 0.94656 1.69941 1.36760 1.35047 1.11083 0.85912 0.81563 0.78469 0.78581 1.19683 1.19876 1.19838 1.17154 0.76929 0.82204 0.86346 1.90683 1.54780 1.66964 1.34485 1.24857 1.17507 0.99199 1.01520 1.20531 0.98839 0.93204 0.97353 1.19969 1.04457 1.00757 0.92976 1.27091 1.11149 1.07683 0.93766 1.98308 1.85535 1.97512 1.18611 1.86552 1.50989 0.94753 0.99782 0.92698 0.91224 0.93064 0.91087 0.92826 0.92980 0.91273 0.93306 0.92172 0.89627 0.91316 0.93497 0.94584 0.91603 0.82380 0.82103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.88 9.19 71.98 0.66 -2.21 16 2 C -0.09 -2.13 2.92 -10.79 -0.03 -2.16 16 3 C -0.15 -3.25 8.95 71.98 0.64 -2.60 16 4 C -0.12 -3.58 5.01 30.60 0.15 -3.43 16 5 C 0.12 4.19 5.14 86.38 0.44 4.63 16 6 N -0.60 -24.79 2.48 -831.11 -2.06 -26.85 16 7 C 0.24 10.51 4.74 85.63 0.41 10.92 16 8 C -0.54 -25.82 6.94 25.60 0.18 -25.64 16 9 H 0.06 2.78 7.81 -2.91 -0.02 2.76 16 10 C 0.05 2.47 5.01 84.65 0.42 2.89 16 11 N -0.89 -43.29 13.29 21.44 0.28 -43.01 16 12 Si 0.93 38.66 29.54 68.60 2.03 40.68 16 13 H -0.27 -11.47 7.11 99.48 0.71 -10.77 16 14 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 15 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 16 C 0.58 25.50 7.56 86.39 0.65 26.16 16 17 O -0.58 -27.15 16.42 -4.41 -0.07 -27.22 16 18 C -0.31 -12.58 6.23 24.05 0.15 -12.43 16 19 C -0.06 -2.27 10.02 21.71 0.22 -2.05 16 20 C -0.15 -4.80 10.08 21.11 0.21 -4.58 16 21 C -0.25 -8.85 6.82 66.86 0.46 -8.39 16 22 Cl -0.03 -0.88 29.27 -2.72 -0.08 -0.96 16 23 S 0.40 16.33 15.84 -56.49 -0.89 15.44 16 24 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 25 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 26 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 27 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 28 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 29 H 0.05 1.22 6.57 -2.39 -0.02 1.21 16 30 H 0.07 1.26 8.14 -2.38 -0.02 1.24 16 31 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 33 H 0.09 2.91 6.50 -2.38 -0.02 2.90 16 34 H 0.07 2.50 7.39 -2.39 -0.02 2.48 16 35 H 0.05 2.15 8.01 -2.39 -0.02 2.13 16 36 H 0.04 1.69 4.50 -21.20 -0.10 1.59 16 37 H 0.27 12.69 8.31 -92.71 -0.77 11.92 16 38 H 0.16 5.06 8.06 -2.91 -0.02 5.03 16 39 H 0.16 4.15 8.06 -2.91 -0.02 4.13 16 Total: -1.00 -52.33 347.10 4.73 -47.60 By element: Atomic # 1 Polarization: 12.28 SS G_CDS: 0.96 Total: 13.24 kcal Atomic # 6 Polarization: -23.49 SS G_CDS: 4.57 Total: -18.92 kcal Atomic # 7 Polarization: -68.08 SS G_CDS: -1.78 Total: -69.85 kcal Atomic # 8 Polarization: -27.15 SS G_CDS: -0.07 Total: -27.22 kcal Atomic # 14 Polarization: 38.66 SS G_CDS: 2.03 Total: 40.68 kcal Atomic # 16 Polarization: 16.33 SS G_CDS: -0.89 Total: 15.44 kcal Atomic # 17 Polarization: -0.88 SS G_CDS: -0.08 Total: -0.96 kcal Total: -52.33 4.73 -47.60 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264097368.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.175 kcal (2) G-P(sol) polarization free energy of solvation -52.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds