Wall clock time and date at job start Tue Mar 31 2020 10:39:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47076 * 2 1 4 4 C 1.52996 * 109.47292 * 239.99887 * 2 1 3 5 5 C 1.53005 * 109.46769 * 119.99799 * 2 1 3 6 6 N 1.46497 * 109.47035 * 64.96443 * 5 2 1 7 7 C 1.46503 * 119.99613 * 274.00917 * 6 5 2 8 8 C 1.50698 * 109.47006 * 262.21761 * 7 6 5 9 9 H 1.07996 * 120.00166 * 0.02562 * 8 7 6 10 10 C 1.37882 * 119.99609 * 180.02562 * 8 7 6 11 11 N 1.31513 * 120.00142 * 359.97438 * 10 8 7 12 12 Si 1.86806 * 119.99712 * 180.02562 * 10 8 7 13 13 H 1.48502 * 109.46857 * 359.97438 * 12 10 8 14 14 H 1.48504 * 109.46841 * 119.99757 * 12 10 8 15 15 H 1.48492 * 109.46889 * 239.99833 * 12 10 8 16 16 C 1.34776 * 120.00574 * 94.01045 * 6 5 2 17 17 O 1.21719 * 119.99469 * 2.22307 * 16 6 5 18 18 C 1.46461 * 120.00259 * 182.22475 * 16 6 5 19 19 C 1.36691 * 125.44640 * 172.04853 * 18 16 6 20 20 C 1.37407 * 113.31498 * 179.97438 * 19 18 16 21 21 C 1.34019 * 115.07173 * 359.97438 * 20 19 18 22 22 Cl 1.73597 * 124.53010 * 179.97438 * 21 20 19 23 23 S 1.70613 * 110.93484 * 359.97438 * 21 20 19 24 24 H 1.08995 * 109.47244 * 300.00052 * 1 2 3 25 25 H 1.08997 * 109.46835 * 60.00334 * 1 2 3 26 26 H 1.08994 * 109.46992 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47456 * 179.97438 * 3 2 1 28 28 H 1.08999 * 109.47359 * 299.99966 * 3 2 1 29 29 H 1.09008 * 109.47187 * 60.00170 * 3 2 1 30 30 H 1.09000 * 109.47371 * 305.04853 * 4 2 1 31 31 H 1.09000 * 109.47282 * 65.04691 * 4 2 1 32 32 H 1.09003 * 109.47230 * 185.04315 * 4 2 1 33 33 H 1.08991 * 109.47265 * 304.95651 * 5 2 1 34 34 H 1.09003 * 109.46553 * 184.95933 * 5 2 1 35 35 H 1.09003 * 109.47392 * 22.22364 * 7 6 5 36 36 H 1.09010 * 109.46958 * 142.21765 * 7 6 5 37 37 H 0.97004 * 119.99857 * 180.02562 * 11 10 8 38 38 H 1.07995 * 123.34493 * 0.23701 * 19 18 16 39 39 H 1.08002 * 122.46383 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0399 -0.7212 1.2493 6 7 1.6516 -2.1326 1.1911 7 6 0.3366 -2.5513 1.6827 8 6 0.4704 -3.0797 3.0876 9 1 1.4381 -3.1011 3.5666 10 6 -0.6427 -3.5359 3.7615 11 7 -1.8212 -3.5094 3.1784 12 14 -0.4769 -4.1903 5.5033 13 1 0.9439 -4.1125 5.9281 14 1 -1.3135 -3.3749 6.4201 15 1 -0.9292 -5.6040 5.5460 16 6 2.5040 -3.0459 0.6853 17 8 3.6119 -2.7044 0.3143 18 6 2.0973 -4.4491 0.5821 19 6 2.8040 -5.4350 -0.0481 20 6 2.1909 -6.6635 0.0066 21 6 1.0209 -6.6857 0.6599 22 17 0.0412 -8.1024 0.8758 23 16 0.6233 -5.1354 1.2510 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 3.1300 1.4426 0.0005 28 1 1.6767 1.9564 -0.8900 29 1 1.6767 1.9564 0.8901 30 1 1.6048 -1.7195 -1.2956 31 1 1.7524 -0.1579 -2.1369 32 1 3.1263 -0.8001 -1.2051 33 1 1.6059 -0.2612 2.1370 34 1 3.1264 -0.6449 1.2948 35 1 -0.3416 -1.6979 1.6784 36 1 -0.0606 -3.3341 1.0363 37 1 -2.6043 -3.8299 3.6526 38 1 3.7522 -5.2661 -0.5366 39 1 2.6203 -7.5462 -0.4437 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264235584.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:39:01 Heat of formation + Delta-G solvation = -20.817292 kcal Electronic energy + Delta-G solvation = -22961.272826 eV Core-core repulsion = 19635.248805 eV Total energy + Delta-G solvation = -3326.024020 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 315.080 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.59226 -37.43172 -36.55118 -35.75976 -34.61924 -32.61548 -29.21795 -27.94145 -26.98962 -26.83087 -25.90428 -23.86989 -23.00262 -20.46711 -18.51065 -18.44559 -17.32919 -16.87742 -15.77849 -15.38301 -14.97081 -14.78787 -14.47894 -13.97109 -13.65415 -13.32395 -12.89818 -12.82585 -12.76292 -12.57660 -12.28506 -12.12430 -11.90748 -11.68349 -11.31558 -11.22679 -11.11001 -11.04906 -10.93168 -10.68550 -10.64611 -10.46994 -10.35961 -10.23427 -9.89232 -9.33218 -9.22626 -8.85770 -8.11330 -7.87292 -7.64187 -6.45209 -4.48548 1.11711 1.95476 2.70111 2.86483 2.89744 3.10813 3.20767 3.24509 3.80344 3.90753 4.16228 4.89078 5.12454 5.13373 5.27244 5.39463 5.76611 5.81299 5.84669 5.88733 5.91467 6.07313 6.13419 6.16153 6.23036 6.32212 6.37816 6.41001 6.46804 6.49908 6.64419 6.69270 6.75998 6.82493 6.86288 7.33534 7.51613 7.68027 8.13104 8.53400 8.88977 9.12535 10.58082 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.011672 B = 0.006702 C = 0.004857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2398.259868 B = 4176.618983 C = 5763.226931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.085 4.085 3 C -0.136 4.136 4 C -0.133 4.133 5 C 0.131 3.869 6 N -0.592 5.592 7 C 0.222 3.778 8 C -0.540 4.540 9 H 0.071 0.929 10 C 0.077 3.923 11 N -0.872 5.872 12 Si 0.889 3.111 13 H -0.267 1.267 14 H -0.278 1.278 15 H -0.276 1.276 16 C 0.592 3.408 17 O -0.561 6.561 18 C -0.289 4.289 19 C -0.077 4.077 20 C -0.160 4.160 21 C -0.257 4.257 22 Cl -0.047 7.047 23 S 0.447 5.553 24 H 0.055 0.945 25 H 0.046 0.954 26 H 0.067 0.933 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.054 0.946 30 H 0.051 0.949 31 H 0.044 0.956 32 H 0.061 0.939 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.065 0.935 36 H 0.037 0.963 37 H 0.272 0.728 38 H 0.143 0.857 39 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.061 1.353 -4.998 5.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.086 4.086 3 C -0.194 4.194 4 C -0.191 4.191 5 C 0.008 3.992 6 N -0.321 5.321 7 C 0.100 3.900 8 C -0.583 4.583 9 H 0.090 0.910 10 C -0.130 4.130 11 N -0.508 5.508 12 Si 0.715 3.285 13 H -0.191 1.191 14 H -0.204 1.204 15 H -0.201 1.201 16 C 0.381 3.619 17 O -0.443 6.443 18 C -0.411 4.411 19 C -0.111 4.111 20 C -0.193 4.193 21 C -0.402 4.402 22 Cl -0.019 7.019 23 S 0.724 5.276 24 H 0.074 0.926 25 H 0.065 0.935 26 H 0.085 0.915 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.063 0.937 32 H 0.080 0.920 33 H 0.095 0.905 34 H 0.096 0.904 35 H 0.083 0.917 36 H 0.054 0.946 37 H 0.082 0.918 38 H 0.160 0.840 39 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 1.069 1.842 -4.339 4.833 hybrid contribution 1.007 -1.389 0.198 1.727 sum 2.076 0.453 -4.141 4.654 Atomic orbital electron populations 1.22021 0.94378 1.02779 1.00978 1.20959 0.96165 0.95157 0.96339 1.21784 1.00848 0.95270 1.01450 1.21810 1.01612 0.99811 0.95823 1.21411 1.00552 0.80520 0.96722 1.47946 1.17876 1.06612 1.59661 1.19818 0.79590 0.96484 0.94153 1.21628 0.95481 1.42486 0.98685 0.91041 1.24929 0.94811 0.94785 0.98511 1.69901 0.98901 1.44192 1.37779 0.86532 0.79031 0.79139 0.83792 1.19137 1.20375 1.20139 1.16859 0.84192 0.83555 0.77282 1.90705 1.20981 1.80777 1.51814 1.24855 1.04625 0.98644 1.12978 1.20211 1.00407 0.90327 1.00175 1.19695 0.95626 0.98929 1.05001 1.27168 1.00911 1.00688 1.11433 1.98298 1.69072 1.38261 1.96221 1.86506 1.13013 0.87435 1.40687 0.92601 0.93488 0.91456 0.92740 0.92842 0.92692 0.93009 0.93741 0.92013 0.90464 0.90389 0.91691 0.94622 0.91826 0.83958 0.85333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.15 7.36 37.16 0.27 -1.87 16 2 C -0.09 -1.27 0.85 -154.51 -0.13 -1.40 16 3 C -0.14 -1.66 8.47 37.16 0.31 -1.35 16 4 C -0.13 -2.09 7.24 37.16 0.27 -1.82 16 5 C 0.13 2.27 4.59 -4.04 -0.02 2.25 16 6 N -0.59 -11.75 1.98 -176.68 -0.35 -12.10 16 7 C 0.22 4.74 3.57 -5.19 -0.02 4.72 16 8 C -0.54 -12.55 6.96 -34.44 -0.24 -12.79 16 9 H 0.07 1.75 7.81 -52.49 -0.41 1.34 16 10 C 0.08 1.80 5.02 -17.82 -0.09 1.71 16 11 N -0.87 -21.01 13.29 55.43 0.74 -20.27 16 12 Si 0.89 19.00 29.54 -169.99 -5.02 13.98 16 13 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 14 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 15 H -0.28 -5.91 7.11 56.52 0.40 -5.50 16 16 C 0.59 12.45 6.05 -12.95 -0.08 12.37 16 17 O -0.56 -12.46 15.06 5.17 0.08 -12.38 16 18 C -0.29 -5.85 6.23 -36.83 -0.23 -6.08 16 19 C -0.08 -1.41 10.02 -40.44 -0.41 -1.82 16 20 C -0.16 -2.77 10.08 -41.37 -0.42 -3.18 16 21 C -0.26 -4.73 6.82 29.25 0.20 -4.53 16 22 Cl -0.05 -0.78 29.27 -51.86 -1.52 -2.30 16 23 S 0.45 9.04 15.86 -107.50 -1.71 7.33 16 24 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 25 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.07 1.13 5.72 -51.93 -0.30 0.84 16 27 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.05 0.63 8.14 -51.92 -0.42 0.21 16 30 H 0.05 0.91 6.85 -51.93 -0.36 0.55 16 31 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.06 1.03 7.41 -51.93 -0.38 0.65 16 33 H 0.08 1.30 8.10 -51.93 -0.42 0.88 16 34 H 0.08 1.38 7.27 -51.93 -0.38 1.01 16 35 H 0.07 1.41 5.89 -51.93 -0.31 1.10 16 36 H 0.04 0.81 4.48 -22.22 -0.10 0.71 16 37 H 0.27 6.29 8.31 -40.82 -0.34 5.95 16 38 H 0.14 2.41 8.06 -52.49 -0.42 1.99 16 39 H 0.13 1.92 8.06 -52.49 -0.42 1.50 16 LS Contribution 336.40 15.07 5.07 5.07 Total: -1.00 -24.52 336.40 -8.45 -32.97 By element: Atomic # 1 Polarization: 6.66 SS G_CDS: -5.17 Total: 1.49 kcal Atomic # 6 Polarization: -13.22 SS G_CDS: -0.57 Total: -13.79 kcal Atomic # 7 Polarization: -32.75 SS G_CDS: 0.39 Total: -32.37 kcal Atomic # 8 Polarization: -12.46 SS G_CDS: 0.08 Total: -12.38 kcal Atomic # 14 Polarization: 19.00 SS G_CDS: -5.02 Total: 13.98 kcal Atomic # 16 Polarization: 9.04 SS G_CDS: -1.71 Total: 7.33 kcal Atomic # 17 Polarization: -0.78 SS G_CDS: -1.52 Total: -2.30 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -24.52 -8.45 -32.97 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264235584.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.158 kcal (2) G-P(sol) polarization free energy of solvation -24.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds