Wall clock time and date at job start Tue Mar 31 2020 10:39:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47076 * 2 1 4 4 C 1.52996 * 109.47292 * 239.99887 * 2 1 3 5 5 C 1.53005 * 109.46769 * 119.99799 * 2 1 3 6 6 N 1.46497 * 109.47035 * 64.96443 * 5 2 1 7 7 C 1.46503 * 119.99613 * 274.00917 * 6 5 2 8 8 C 1.50698 * 109.47006 * 262.21761 * 7 6 5 9 9 H 1.07996 * 120.00166 * 0.02562 * 8 7 6 10 10 C 1.37882 * 119.99609 * 180.02562 * 8 7 6 11 11 N 1.31513 * 120.00142 * 359.97438 * 10 8 7 12 12 Si 1.86806 * 119.99712 * 180.02562 * 10 8 7 13 13 H 1.48502 * 109.46857 * 359.97438 * 12 10 8 14 14 H 1.48504 * 109.46841 * 119.99757 * 12 10 8 15 15 H 1.48492 * 109.46889 * 239.99833 * 12 10 8 16 16 C 1.34776 * 120.00574 * 94.01045 * 6 5 2 17 17 O 1.21719 * 119.99469 * 2.22307 * 16 6 5 18 18 C 1.46461 * 120.00259 * 182.22475 * 16 6 5 19 19 C 1.36691 * 125.44640 * 172.04853 * 18 16 6 20 20 C 1.37407 * 113.31498 * 179.97438 * 19 18 16 21 21 C 1.34019 * 115.07173 * 359.97438 * 20 19 18 22 22 Cl 1.73597 * 124.53010 * 179.97438 * 21 20 19 23 23 S 1.70613 * 110.93484 * 359.97438 * 21 20 19 24 24 H 1.08995 * 109.47244 * 300.00052 * 1 2 3 25 25 H 1.08997 * 109.46835 * 60.00334 * 1 2 3 26 26 H 1.08994 * 109.46992 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47456 * 179.97438 * 3 2 1 28 28 H 1.08999 * 109.47359 * 299.99966 * 3 2 1 29 29 H 1.09008 * 109.47187 * 60.00170 * 3 2 1 30 30 H 1.09000 * 109.47371 * 305.04853 * 4 2 1 31 31 H 1.09000 * 109.47282 * 65.04691 * 4 2 1 32 32 H 1.09003 * 109.47230 * 185.04315 * 4 2 1 33 33 H 1.08991 * 109.47265 * 304.95651 * 5 2 1 34 34 H 1.09003 * 109.46553 * 184.95933 * 5 2 1 35 35 H 1.09003 * 109.47392 * 22.22364 * 7 6 5 36 36 H 1.09010 * 109.46958 * 142.21765 * 7 6 5 37 37 H 0.97004 * 119.99857 * 180.02562 * 11 10 8 38 38 H 1.07995 * 123.34493 * 0.23701 * 19 18 16 39 39 H 1.08002 * 122.46383 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0399 -0.7212 1.2493 6 7 1.6516 -2.1326 1.1911 7 6 0.3366 -2.5513 1.6827 8 6 0.4704 -3.0797 3.0876 9 1 1.4381 -3.1011 3.5666 10 6 -0.6427 -3.5359 3.7615 11 7 -1.8212 -3.5094 3.1784 12 14 -0.4769 -4.1903 5.5033 13 1 0.9439 -4.1125 5.9281 14 1 -1.3135 -3.3749 6.4201 15 1 -0.9292 -5.6040 5.5460 16 6 2.5040 -3.0459 0.6853 17 8 3.6119 -2.7044 0.3143 18 6 2.0973 -4.4491 0.5821 19 6 2.8040 -5.4350 -0.0481 20 6 2.1909 -6.6635 0.0066 21 6 1.0209 -6.6857 0.6599 22 17 0.0412 -8.1024 0.8758 23 16 0.6233 -5.1354 1.2510 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 3.1300 1.4426 0.0005 28 1 1.6767 1.9564 -0.8900 29 1 1.6767 1.9564 0.8901 30 1 1.6048 -1.7195 -1.2956 31 1 1.7524 -0.1579 -2.1369 32 1 3.1263 -0.8001 -1.2051 33 1 1.6059 -0.2612 2.1370 34 1 3.1264 -0.6449 1.2948 35 1 -0.3416 -1.6979 1.6784 36 1 -0.0606 -3.3341 1.0363 37 1 -2.6043 -3.8299 3.6526 38 1 3.7522 -5.2661 -0.5366 39 1 2.6203 -7.5462 -0.4437 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264235584.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:39:01 Heat of formation + Delta-G solvation = -30.779597 kcal Electronic energy + Delta-G solvation = -22961.704824 eV Core-core repulsion = 19635.248805 eV Total energy + Delta-G solvation = -3326.456018 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 315.080 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.13832 -38.87223 -37.96774 -37.20554 -36.22458 -34.33304 -30.71627 -29.59257 -28.15159 -28.08228 -27.35314 -25.44265 -24.63982 -21.94940 -20.02536 -19.72824 -18.98545 -18.58837 -17.32785 -16.95059 -16.54093 -16.31709 -16.00934 -15.24426 -15.05820 -14.66810 -14.47896 -14.34468 -14.24632 -14.16673 -13.79517 -13.42944 -13.23809 -13.00139 -12.82843 -12.70293 -12.50832 -12.46495 -12.38414 -12.18732 -12.06809 -11.95545 -11.77188 -11.52948 -11.48547 -10.96852 -10.77079 -10.60828 -9.67069 -9.41155 -9.22179 -8.24643 -6.32240 -0.40580 0.43817 1.17799 1.37597 1.39350 1.42395 1.46721 1.52896 2.23524 2.31780 2.43586 3.07407 3.72757 3.91376 3.99370 4.07983 4.33923 4.50461 4.57592 4.61373 4.71401 4.79299 4.84967 4.93584 4.96065 4.96717 5.06042 5.08666 5.12264 5.17218 5.24213 5.34091 5.39696 5.49173 5.54161 5.63211 5.81594 5.92565 6.46727 6.73619 7.23407 7.34022 8.78205 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.011672 B = 0.006702 C = 0.004857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2398.259868 B = 4176.618983 C = 5763.226931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.081 4.081 3 C -0.130 4.130 4 C -0.126 4.126 5 C 0.126 3.874 6 N -0.590 5.590 7 C 0.234 3.766 8 C -0.545 4.545 9 H 0.054 0.946 10 C 0.052 3.948 11 N -0.891 5.891 12 Si 0.927 3.073 13 H -0.273 1.273 14 H -0.274 1.274 15 H -0.274 1.274 16 C 0.587 3.413 17 O -0.579 6.579 18 C -0.307 4.307 19 C -0.067 4.067 20 C -0.149 4.149 21 C -0.253 4.253 22 Cl -0.029 7.029 23 S 0.401 5.599 24 H 0.057 0.943 25 H 0.066 0.934 26 H 0.041 0.959 27 H 0.056 0.944 28 H 0.070 0.930 29 H 0.063 0.937 30 H 0.026 0.974 31 H 0.066 0.934 32 H 0.047 0.953 33 H 0.078 0.922 34 H 0.071 0.929 35 H 0.059 0.941 36 H 0.034 0.966 37 H 0.273 0.727 38 H 0.158 0.842 39 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.349 1.236 -5.647 6.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.082 4.082 3 C -0.187 4.187 4 C -0.183 4.183 5 C 0.003 3.997 6 N -0.318 5.318 7 C 0.111 3.889 8 C -0.586 4.586 9 H 0.072 0.928 10 C -0.153 4.153 11 N -0.528 5.528 12 Si 0.753 3.247 13 H -0.198 1.198 14 H -0.199 1.199 15 H -0.200 1.200 16 C 0.377 3.623 17 O -0.464 6.464 18 C -0.429 4.429 19 C -0.101 4.101 20 C -0.182 4.182 21 C -0.399 4.399 22 Cl -0.001 7.001 23 S 0.677 5.323 24 H 0.076 0.924 25 H 0.085 0.915 26 H 0.061 0.939 27 H 0.075 0.925 28 H 0.089 0.911 29 H 0.082 0.918 30 H 0.045 0.955 31 H 0.085 0.915 32 H 0.066 0.934 33 H 0.097 0.903 34 H 0.089 0.911 35 H 0.077 0.923 36 H 0.050 0.950 37 H 0.083 0.917 38 H 0.176 0.824 39 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 1.346 1.752 -4.972 5.441 hybrid contribution 0.964 -1.455 0.324 1.775 sum 2.310 0.297 -4.647 5.198 Atomic orbital electron populations 1.21956 0.94214 1.01455 1.02047 1.20935 0.96174 0.96517 0.94555 1.21738 1.00995 0.93203 1.02801 1.21729 1.00459 0.98912 0.97203 1.21605 1.00219 0.79528 0.98300 1.47973 1.17233 1.07589 1.59037 1.19600 0.80009 0.96038 0.93289 1.21580 0.94649 1.42898 0.99518 0.92820 1.25289 0.94650 0.94932 1.00397 1.69941 0.99207 1.45070 1.38575 0.85951 0.78492 0.78800 0.81496 1.19770 1.19946 1.19984 1.17030 0.84072 0.84071 0.77177 1.90680 1.21570 1.81187 1.52914 1.24921 1.04979 0.98786 1.14241 1.20518 1.00569 0.90200 0.98831 1.19968 0.94807 0.99508 1.03881 1.27093 1.01289 1.00397 1.11093 1.98306 1.68719 1.36919 1.96132 1.86559 1.14006 0.89208 1.42563 0.92427 0.91478 0.93948 0.92518 0.91103 0.91751 0.95462 0.91515 0.93355 0.90322 0.91068 0.92275 0.94952 0.91697 0.82429 0.82226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.03 7.36 71.98 0.53 -3.50 16 2 C -0.08 -2.33 0.85 -52.18 -0.04 -2.38 16 3 C -0.13 -2.90 8.47 71.98 0.61 -2.29 16 4 C -0.13 -3.85 7.24 71.98 0.52 -3.33 16 5 C 0.13 4.37 4.59 86.38 0.40 4.77 16 6 N -0.59 -23.84 1.98 -831.09 -1.65 -25.49 16 7 C 0.23 10.18 3.57 85.63 0.31 10.48 16 8 C -0.54 -25.74 6.96 25.60 0.18 -25.56 16 9 H 0.05 2.69 7.81 -2.91 -0.02 2.66 16 10 C 0.05 2.47 5.02 84.66 0.43 2.89 16 11 N -0.89 -43.19 13.29 21.45 0.28 -42.90 16 12 Si 0.93 38.84 29.54 68.60 2.03 40.87 16 13 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 14 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 15 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 16 C 0.59 24.97 6.05 86.38 0.52 25.49 16 17 O -0.58 -25.95 15.06 -4.41 -0.07 -26.02 16 18 C -0.31 -12.43 6.23 24.05 0.15 -12.28 16 19 C -0.07 -2.34 10.02 21.71 0.22 -2.12 16 20 C -0.15 -4.82 10.08 21.11 0.21 -4.61 16 21 C -0.25 -8.97 6.82 66.86 0.46 -8.51 16 22 Cl -0.03 -0.92 29.27 -2.72 -0.08 -1.00 16 23 S 0.40 16.26 15.86 -56.49 -0.90 15.36 16 24 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 25 H 0.07 1.64 8.14 -2.39 -0.02 1.63 16 26 H 0.04 1.43 5.72 -2.39 -0.01 1.42 16 27 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 28 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 29 H 0.06 1.33 8.14 -2.38 -0.02 1.31 16 30 H 0.03 0.94 6.85 -2.39 -0.02 0.93 16 31 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.05 1.60 7.41 -2.39 -0.02 1.58 16 33 H 0.08 2.66 8.10 -2.39 -0.02 2.64 16 34 H 0.07 2.55 7.27 -2.39 -0.02 2.53 16 35 H 0.06 2.63 5.89 -2.39 -0.01 2.62 16 36 H 0.03 1.51 4.48 -21.27 -0.10 1.42 16 37 H 0.27 12.66 8.31 -92.71 -0.77 11.89 16 38 H 0.16 5.04 8.06 -2.91 -0.02 5.02 16 39 H 0.16 4.17 8.06 -2.91 -0.02 4.15 16 Total: -1.00 -51.65 336.40 5.07 -46.57 By element: Atomic # 1 Polarization: 12.59 SS G_CDS: 0.97 Total: 13.56 kcal Atomic # 6 Polarization: -25.42 SS G_CDS: 4.48 Total: -20.94 kcal Atomic # 7 Polarization: -67.03 SS G_CDS: -1.36 Total: -68.40 kcal Atomic # 8 Polarization: -25.95 SS G_CDS: -0.07 Total: -26.02 kcal Atomic # 14 Polarization: 38.84 SS G_CDS: 2.03 Total: 40.87 kcal Atomic # 16 Polarization: 16.26 SS G_CDS: -0.90 Total: 15.36 kcal Atomic # 17 Polarization: -0.92 SS G_CDS: -0.08 Total: -1.00 kcal Total: -51.65 5.07 -46.57 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264235584.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.795 kcal (2) G-P(sol) polarization free energy of solvation -51.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds