Wall clock time and date at job start Tue Mar 31 2020 11:14:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46498 * 109.47371 * 2 1 4 4 C 1.36944 * 120.00206 * 293.76892 * 3 2 1 5 5 H 1.07995 * 120.00446 * 149.38615 * 4 3 2 6 6 C 1.38816 * 119.99615 * 329.38781 * 4 3 2 7 7 N 1.31620 * 119.99924 * 337.58187 * 6 4 3 8 8 Si 1.86795 * 119.99914 * 157.58237 * 6 4 3 9 9 H 1.48507 * 109.46989 * 359.97438 * 8 6 4 10 10 H 1.48501 * 109.47221 * 119.99523 * 8 6 4 11 11 H 1.48498 * 109.47096 * 239.99808 * 8 6 4 12 12 S 1.65598 * 120.00129 * 113.76095 * 3 2 1 13 13 O 1.42102 * 106.40212 * 336.46720 * 12 3 2 14 14 O 1.42095 * 106.40292 * 203.54394 * 12 3 2 15 15 C 1.76207 * 107.21485 * 90.00448 * 12 3 2 16 16 C 1.38178 * 119.94324 * 269.72518 * 15 12 3 17 17 C 1.38769 * 120.05510 * 179.76789 * 16 15 12 18 18 O 1.35894 * 120.03091 * 180.27394 * 17 16 15 19 19 C 1.42907 * 116.99972 * 180.25292 * 18 17 16 20 20 C 1.38644 * 119.94172 * 0.53339 * 17 16 15 21 21 C 1.38634 * 119.88825 * 359.71916 * 20 17 16 22 22 O 1.35901 * 120.02165 * 179.97438 * 21 20 17 23 23 C 1.42891 * 117.00466 * 0.02653 * 22 21 20 24 24 C 1.38172 * 119.94363 * 90.00438 * 15 12 3 25 25 H 1.08994 * 109.47875 * 59.99584 * 1 2 3 26 26 H 1.09008 * 109.47165 * 180.02562 * 1 2 3 27 27 H 1.09012 * 109.46806 * 299.99325 * 1 2 3 28 28 H 1.09007 * 109.46339 * 240.00634 * 2 1 3 29 29 H 1.08994 * 109.47875 * 120.00416 * 2 1 3 30 30 H 0.97001 * 119.99491 * 180.02562 * 7 6 4 31 31 H 1.08004 * 119.97481 * 359.97438 * 16 15 12 32 32 H 1.08999 * 109.46957 * 300.00052 * 19 18 17 33 33 H 1.08998 * 109.47175 * 60.00036 * 19 18 17 34 34 H 1.08997 * 109.47009 * 180.02562 * 19 18 17 35 35 H 1.07999 * 120.05288 * 179.74465 * 20 17 16 36 36 H 1.09009 * 109.47219 * 300.00099 * 23 22 21 37 37 H 1.09004 * 109.47339 * 59.99784 * 23 22 21 38 38 H 1.08997 * 109.47479 * 180.02562 * 23 22 21 39 39 H 1.07998 * 119.97302 * 359.97438 * 24 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 1.7960 2.1861 -1.0853 5 1 1.6827 3.2519 -0.9531 6 6 1.7162 1.6320 -2.3556 7 7 2.2697 0.4631 -2.5996 8 14 0.8232 2.5453 -3.7186 9 1 0.2926 3.8277 -3.1900 10 1 1.7676 2.8209 -4.8310 11 1 -0.3008 1.7134 -4.2181 12 16 2.8392 1.9692 1.3125 13 8 2.4450 1.1734 2.4218 14 8 2.6916 3.3820 1.2781 15 6 4.5500 1.6409 1.0476 16 6 5.1027 0.4569 1.4969 17 6 6.4487 0.1939 1.2853 18 8 6.9906 -0.9732 1.7224 19 6 8.3836 -1.1746 1.4750 20 6 7.2415 1.1252 0.6323 21 6 6.6856 2.3146 0.1871 22 8 7.4603 3.2297 -0.4528 23 6 8.8389 2.9000 -0.6332 24 6 5.3378 2.5705 0.3962 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8902 28 1 1.8932 -0.5138 -0.8901 29 1 1.8934 -0.5138 0.8899 30 1 2.2143 0.0761 -3.4874 31 1 4.4859 -0.2660 2.0102 32 1 8.5692 -1.1495 0.4012 33 1 8.9568 -0.3853 1.9613 34 1 8.6871 -2.1427 1.8733 35 1 8.2902 0.9241 0.4703 36 1 9.3068 2.7494 0.3398 37 1 8.9200 1.9855 -1.2208 38 1 9.3418 3.7137 -1.1557 39 1 4.9044 3.4970 0.0496 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000268973329.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:14:45 Heat of formation + Delta-G solvation = -111.373637 kcal Electronic energy + Delta-G solvation = -25336.692528 eV Core-core repulsion = 21566.032525 eV Total energy + Delta-G solvation = -3770.660003 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.102 amu Computer time = 4.61 seconds Orbital eigenvalues (eV) -40.20219 -38.62810 -36.24132 -36.12644 -35.78017 -34.36813 -31.86342 -30.07245 -30.02169 -29.24495 -27.90562 -26.46701 -24.93753 -22.18556 -22.12737 -21.53341 -19.07871 -18.26932 -16.85712 -16.78837 -16.40832 -15.82895 -15.68426 -15.66976 -15.38742 -15.34326 -14.83225 -14.57182 -14.25404 -13.50528 -13.00927 -12.90027 -12.56021 -12.48619 -12.20921 -12.04477 -12.01608 -11.51757 -11.29826 -11.27879 -11.01777 -11.01644 -10.93642 -10.69106 -10.60589 -10.51947 -10.43020 -10.18165 -9.89579 -9.74926 -9.39067 -8.56851 -7.92368 -7.63132 -6.56087 -4.12209 1.32543 1.81811 1.84523 3.08031 3.15861 3.23467 3.39451 3.43720 3.88362 4.01258 4.49739 4.72502 4.95200 5.00258 5.01920 5.08952 5.11718 5.15473 5.32641 5.37581 5.42145 5.43614 5.68975 5.90236 6.11485 6.20344 6.35850 6.41972 6.48553 6.55949 6.71636 6.78584 6.83302 6.97136 7.18127 7.33675 7.34346 7.56640 7.74793 8.27310 8.65045 9.12677 10.32500 Molecular weight = 315.10amu Principal moments of inertia in cm(-1) A = 0.013364 B = 0.005600 C = 0.004931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2094.745749 B = 4998.932900 C = 5676.502392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.108 3.892 3 N -0.794 5.794 4 C -0.235 4.235 5 H 0.115 0.885 6 C 0.037 3.963 7 N -0.818 5.818 8 Si 0.922 3.078 9 H -0.259 1.259 10 H -0.278 1.278 11 H -0.275 1.275 12 S 2.521 3.479 13 O -1.000 7.000 14 O -0.982 6.982 15 C -0.572 4.572 16 C -0.097 4.097 17 C 0.135 3.865 18 O -0.315 6.315 19 C 0.028 3.972 20 C -0.268 4.268 21 C 0.136 3.864 22 O -0.313 6.313 23 C 0.028 3.972 24 C -0.085 4.085 25 H 0.060 0.940 26 H 0.046 0.954 27 H 0.044 0.956 28 H 0.105 0.895 29 H 0.059 0.941 30 H 0.275 0.725 31 H 0.139 0.861 32 H 0.052 0.948 33 H 0.050 0.950 34 H 0.098 0.902 35 H 0.130 0.870 36 H 0.050 0.950 37 H 0.052 0.948 38 H 0.098 0.902 39 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.559 -2.465 0.299 9.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.018 4.018 3 N -0.618 5.618 4 C -0.384 4.384 5 H 0.132 0.868 6 C -0.177 4.177 7 N -0.456 5.456 8 Si 0.747 3.253 9 H -0.183 1.183 10 H -0.203 1.203 11 H -0.201 1.201 12 S 2.621 3.379 13 O -0.989 6.989 14 O -0.971 6.971 15 C -0.648 4.648 16 C -0.117 4.117 17 C 0.090 3.910 18 O -0.228 6.228 19 C -0.067 4.067 20 C -0.288 4.288 21 C 0.091 3.909 22 O -0.227 6.227 23 C -0.067 4.067 24 C -0.105 4.105 25 H 0.079 0.921 26 H 0.065 0.935 27 H 0.063 0.937 28 H 0.123 0.877 29 H 0.078 0.922 30 H 0.086 0.914 31 H 0.157 0.843 32 H 0.071 0.929 33 H 0.069 0.931 34 H 0.116 0.884 35 H 0.148 0.852 36 H 0.069 0.931 37 H 0.070 0.930 38 H 0.117 0.883 39 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 9.319 -2.195 1.228 9.653 hybrid contribution 1.214 -0.123 -1.170 1.690 sum 10.534 -2.319 0.058 10.786 Atomic orbital electron populations 1.21887 0.96835 0.99879 1.01811 1.21485 0.93943 0.83037 1.03309 1.54058 1.52800 1.20342 1.34559 1.19981 1.39994 0.93621 0.84840 0.86753 1.25814 0.96589 0.96603 0.98715 1.69931 1.36186 1.16875 1.22610 0.85906 0.79269 0.80206 0.79878 1.18309 1.20335 1.20064 1.11966 0.73248 0.74862 0.77870 1.93341 1.81474 1.70191 1.53932 1.93350 1.85343 1.30812 1.87625 1.32414 1.29537 0.98906 1.03976 1.20013 0.92051 0.97386 1.02248 1.18840 0.92926 0.84859 0.94420 1.86091 1.25107 1.35465 1.76177 1.22994 0.80303 1.02361 1.01055 1.21232 1.00497 0.96780 1.10275 1.18887 0.91209 0.87878 0.92935 1.86106 1.20910 1.42487 1.73158 1.22996 0.80522 1.02230 1.00975 1.20063 0.89940 1.00446 1.00051 0.92099 0.93470 0.93678 0.87733 0.92227 0.91427 0.84296 0.92934 0.93094 0.88365 0.85227 0.93126 0.92952 0.88346 0.83880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.84 9.95 37.16 0.37 -2.47 16 2 C 0.11 2.38 5.84 -4.05 -0.02 2.36 16 3 N -0.79 -18.98 2.98 -59.91 -0.18 -19.16 16 4 C -0.23 -5.70 8.67 -15.05 -0.13 -5.83 16 5 H 0.12 2.80 7.34 -52.49 -0.39 2.42 16 6 C 0.04 0.86 4.63 -17.43 -0.08 0.78 16 7 N -0.82 -19.37 11.06 55.49 0.61 -18.75 16 8 Si 0.92 18.17 29.61 -169.99 -5.03 13.13 16 9 H -0.26 -5.08 7.11 56.52 0.40 -4.68 16 10 H -0.28 -5.49 7.11 56.52 0.40 -5.09 16 11 H -0.28 -5.33 7.11 56.52 0.40 -4.92 16 12 S 2.52 61.02 5.63 -107.50 -0.61 60.42 16 13 O -1.00 -25.21 15.91 -57.17 -0.91 -26.12 16 14 O -0.98 -25.66 16.13 -57.17 -0.92 -26.59 16 15 C -0.57 -12.92 5.97 -39.63 -0.24 -13.16 16 16 C -0.10 -2.06 9.46 -39.41 -0.37 -2.43 16 17 C 0.14 2.54 6.68 -39.24 -0.26 2.27 16 18 O -0.31 -5.16 10.50 -19.41 -0.20 -5.37 16 19 C 0.03 0.31 9.81 101.05 0.99 1.30 16 20 C -0.27 -4.61 8.02 -39.29 -0.32 -4.93 16 21 C 0.14 2.61 6.68 -39.24 -0.26 2.35 16 22 O -0.31 -5.30 10.49 -19.43 -0.20 -5.51 16 23 C 0.03 0.32 9.81 101.05 0.99 1.31 16 24 C -0.09 -1.86 9.46 -39.41 -0.37 -2.23 16 25 H 0.06 1.22 7.41 -51.93 -0.38 0.83 16 26 H 0.05 0.79 8.14 -51.92 -0.42 0.37 16 27 H 0.04 0.87 8.14 -51.92 -0.42 0.45 16 28 H 0.11 2.40 5.52 -51.92 -0.29 2.11 16 29 H 0.06 1.26 7.03 -51.93 -0.37 0.89 16 30 H 0.28 6.07 8.31 -40.82 -0.34 5.73 16 31 H 0.14 2.86 7.60 -52.48 -0.40 2.46 16 32 H 0.05 0.53 7.66 -51.93 -0.40 0.13 16 33 H 0.05 0.49 7.66 -51.93 -0.40 0.09 16 34 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.13 1.74 4.54 -52.49 -0.24 1.50 16 36 H 0.05 0.50 7.66 -51.92 -0.40 0.10 16 37 H 0.05 0.54 7.66 -51.93 -0.40 0.15 16 38 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.14 3.13 7.61 -52.49 -0.40 2.73 16 LS Contribution 337.21 15.07 5.08 5.08 Total: -1.00 -30.51 337.21 -6.94 -37.45 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: -4.88 Total: 6.08 kcal Atomic # 6 Polarization: -20.96 SS G_CDS: 0.30 Total: -20.66 kcal Atomic # 7 Polarization: -38.35 SS G_CDS: 0.44 Total: -37.91 kcal Atomic # 8 Polarization: -61.35 SS G_CDS: -2.24 Total: -63.59 kcal Atomic # 14 Polarization: 18.17 SS G_CDS: -5.03 Total: 13.13 kcal Atomic # 16 Polarization: 61.02 SS G_CDS: -0.61 Total: 60.42 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -30.51 -6.94 -37.45 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268973329.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.927 kcal (2) G-P(sol) polarization free energy of solvation -30.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.62 seconds