Wall clock time and date at job start Tue Mar 31 2020 11:14:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46498 * 109.47371 * 2 1 4 4 C 1.36944 * 120.00206 * 293.76892 * 3 2 1 5 5 H 1.07995 * 120.00446 * 149.38615 * 4 3 2 6 6 C 1.38816 * 119.99615 * 329.38781 * 4 3 2 7 7 N 1.31620 * 119.99924 * 337.58187 * 6 4 3 8 8 Si 1.86795 * 119.99914 * 157.58237 * 6 4 3 9 9 H 1.48507 * 109.46989 * 359.97438 * 8 6 4 10 10 H 1.48501 * 109.47221 * 119.99523 * 8 6 4 11 11 H 1.48498 * 109.47096 * 239.99808 * 8 6 4 12 12 S 1.65598 * 120.00129 * 113.76095 * 3 2 1 13 13 O 1.42102 * 106.40212 * 336.46720 * 12 3 2 14 14 O 1.42095 * 106.40292 * 203.54394 * 12 3 2 15 15 C 1.76207 * 107.21485 * 90.00448 * 12 3 2 16 16 C 1.38178 * 119.94324 * 269.72518 * 15 12 3 17 17 C 1.38769 * 120.05510 * 179.76789 * 16 15 12 18 18 O 1.35894 * 120.03091 * 180.27394 * 17 16 15 19 19 C 1.42907 * 116.99972 * 180.25292 * 18 17 16 20 20 C 1.38644 * 119.94172 * 0.53339 * 17 16 15 21 21 C 1.38634 * 119.88825 * 359.71916 * 20 17 16 22 22 O 1.35901 * 120.02165 * 179.97438 * 21 20 17 23 23 C 1.42891 * 117.00466 * 0.02653 * 22 21 20 24 24 C 1.38172 * 119.94363 * 90.00438 * 15 12 3 25 25 H 1.08994 * 109.47875 * 59.99584 * 1 2 3 26 26 H 1.09008 * 109.47165 * 180.02562 * 1 2 3 27 27 H 1.09012 * 109.46806 * 299.99325 * 1 2 3 28 28 H 1.09007 * 109.46339 * 240.00634 * 2 1 3 29 29 H 1.08994 * 109.47875 * 120.00416 * 2 1 3 30 30 H 0.97001 * 119.99491 * 180.02562 * 7 6 4 31 31 H 1.08004 * 119.97481 * 359.97438 * 16 15 12 32 32 H 1.08999 * 109.46957 * 300.00052 * 19 18 17 33 33 H 1.08998 * 109.47175 * 60.00036 * 19 18 17 34 34 H 1.08997 * 109.47009 * 180.02562 * 19 18 17 35 35 H 1.07999 * 120.05288 * 179.74465 * 20 17 16 36 36 H 1.09009 * 109.47219 * 300.00099 * 23 22 21 37 37 H 1.09004 * 109.47339 * 59.99784 * 23 22 21 38 38 H 1.08997 * 109.47479 * 180.02562 * 23 22 21 39 39 H 1.07998 * 119.97302 * 359.97438 * 24 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 1.7960 2.1861 -1.0853 5 1 1.6827 3.2519 -0.9531 6 6 1.7162 1.6320 -2.3556 7 7 2.2697 0.4631 -2.5996 8 14 0.8232 2.5453 -3.7186 9 1 0.2926 3.8277 -3.1900 10 1 1.7676 2.8209 -4.8310 11 1 -0.3008 1.7134 -4.2181 12 16 2.8392 1.9692 1.3125 13 8 2.4450 1.1734 2.4218 14 8 2.6916 3.3820 1.2781 15 6 4.5500 1.6409 1.0476 16 6 5.1027 0.4569 1.4969 17 6 6.4487 0.1939 1.2853 18 8 6.9906 -0.9732 1.7224 19 6 8.3836 -1.1746 1.4750 20 6 7.2415 1.1252 0.6323 21 6 6.6856 2.3146 0.1871 22 8 7.4603 3.2297 -0.4528 23 6 8.8389 2.9000 -0.6332 24 6 5.3378 2.5705 0.3962 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8902 28 1 1.8932 -0.5138 -0.8901 29 1 1.8934 -0.5138 0.8899 30 1 2.2143 0.0761 -3.4874 31 1 4.4859 -0.2660 2.0102 32 1 8.5692 -1.1495 0.4012 33 1 8.9568 -0.3853 1.9613 34 1 8.6871 -2.1427 1.8733 35 1 8.2902 0.9241 0.4703 36 1 9.3068 2.7494 0.3398 37 1 8.9200 1.9855 -1.2208 38 1 9.3418 3.7137 -1.1557 39 1 4.9044 3.4970 0.0496 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000268973329.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:14:40 Heat of formation + Delta-G solvation = -132.900883 kcal Electronic energy + Delta-G solvation = -25337.626019 eV Core-core repulsion = 21566.032525 eV Total energy + Delta-G solvation = -3771.593494 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.102 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.56666 -39.87929 -37.92839 -37.73262 -37.63600 -36.34076 -33.67648 -31.54770 -31.39052 -30.96226 -28.89907 -27.52431 -26.75120 -23.66360 -23.58574 -23.24986 -20.54509 -19.99578 -18.67582 -18.25161 -18.07174 -17.22788 -17.13104 -17.02524 -16.94562 -16.55932 -16.46957 -15.99092 -15.72893 -15.21904 -14.67514 -14.27848 -14.08529 -13.80968 -13.70361 -13.60673 -13.34530 -13.08024 -12.71795 -12.66869 -12.59955 -12.56358 -12.53571 -12.43311 -12.24230 -12.13558 -11.94532 -11.74283 -11.64448 -11.48941 -11.15651 -10.00890 -9.72221 -9.11756 -8.35006 -5.99581 -0.26118 0.02472 0.31663 1.51201 1.55343 1.68470 2.19688 2.21236 2.27519 2.41259 2.72735 2.91235 3.26383 3.73925 3.83259 3.84102 3.93121 4.23186 4.25438 4.30346 4.32626 4.38531 4.41117 4.57767 4.64700 4.65653 4.73406 4.79809 5.00876 5.03428 5.05411 5.20609 5.29559 5.32587 5.37993 5.65043 5.78910 6.09270 6.41449 6.43782 6.80170 7.29320 8.54513 Molecular weight = 315.10amu Principal moments of inertia in cm(-1) A = 0.013364 B = 0.005600 C = 0.004931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2094.745749 B = 4998.932900 C = 5676.502392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.104 3.896 3 N -0.799 5.799 4 C -0.255 4.255 5 H 0.103 0.897 6 C 0.012 3.988 7 N -0.834 5.834 8 Si 0.982 3.018 9 H -0.261 1.261 10 H -0.274 1.274 11 H -0.263 1.263 12 S 2.519 3.481 13 O -1.019 7.019 14 O -1.011 7.011 15 C -0.587 4.587 16 C -0.125 4.125 17 C 0.144 3.856 18 O -0.328 6.328 19 C 0.012 3.988 20 C -0.256 4.256 21 C 0.143 3.857 22 O -0.330 6.330 23 C 0.013 3.987 24 C -0.120 4.120 25 H 0.054 0.946 26 H 0.077 0.923 27 H 0.041 0.959 28 H 0.097 0.903 29 H 0.060 0.940 30 H 0.283 0.717 31 H 0.133 0.867 32 H 0.066 0.934 33 H 0.069 0.931 34 H 0.127 0.873 35 H 0.175 0.825 36 H 0.070 0.930 37 H 0.066 0.934 38 H 0.126 0.874 39 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.646 -3.431 -1.002 12.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.022 4.022 3 N -0.623 5.623 4 C -0.406 4.406 5 H 0.120 0.880 6 C -0.201 4.201 7 N -0.472 5.472 8 Si 0.804 3.196 9 H -0.185 1.185 10 H -0.199 1.199 11 H -0.188 1.188 12 S 2.623 3.377 13 O -1.009 7.009 14 O -1.001 7.001 15 C -0.667 4.667 16 C -0.145 4.145 17 C 0.097 3.903 18 O -0.241 6.241 19 C -0.081 4.081 20 C -0.275 4.275 21 C 0.096 3.904 22 O -0.244 6.244 23 C -0.081 4.081 24 C -0.140 4.140 25 H 0.073 0.927 26 H 0.096 0.904 27 H 0.061 0.939 28 H 0.114 0.886 29 H 0.079 0.921 30 H 0.094 0.906 31 H 0.150 0.850 32 H 0.084 0.916 33 H 0.088 0.912 34 H 0.145 0.855 35 H 0.192 0.808 36 H 0.089 0.911 37 H 0.084 0.916 38 H 0.144 0.856 39 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 11.406 -3.179 -0.053 11.841 hybrid contribution 0.816 0.104 -0.787 1.139 sum 12.223 -3.075 -0.840 12.631 Atomic orbital electron populations 1.21858 0.94969 1.01743 1.01346 1.21607 0.95549 0.82118 1.02898 1.54103 1.52780 1.20959 1.34409 1.20073 1.41258 0.93507 0.85756 0.87957 1.26493 0.96495 0.97175 0.99965 1.69978 1.36162 1.17540 1.23541 0.85032 0.78382 0.79132 0.77058 1.18469 1.19942 1.18788 1.11978 0.73778 0.74060 0.77869 1.93286 1.82281 1.70255 1.55050 1.93285 1.86197 1.32628 1.88035 1.31989 1.28892 1.00151 1.05649 1.20048 0.93793 0.97108 1.03568 1.18831 0.92210 0.85844 0.93404 1.86091 1.28285 1.34012 1.75757 1.23474 0.77409 1.04721 1.02535 1.21574 1.02346 0.95171 1.08439 1.18864 0.90551 0.88725 0.92241 1.86099 1.23532 1.42310 1.72409 1.23472 0.77607 1.04243 1.02796 1.20042 0.91852 1.00144 1.01924 0.92685 0.90416 0.93946 0.88552 0.92112 0.90610 0.84951 0.91573 0.91239 0.85461 0.80801 0.91131 0.91555 0.85571 0.85536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.47 9.95 71.98 0.72 -4.75 16 2 C 0.10 4.68 5.84 86.38 0.50 5.18 16 3 N -0.80 -39.69 2.98 -343.46 -1.02 -40.71 16 4 C -0.26 -12.81 8.67 84.03 0.73 -12.08 16 5 H 0.10 5.27 7.34 -2.91 -0.02 5.25 16 6 C 0.01 0.56 4.63 84.86 0.39 0.95 16 7 N -0.83 -39.41 11.06 21.65 0.24 -39.17 16 8 Si 0.98 36.77 29.61 68.60 2.03 38.80 16 9 H -0.26 -9.78 7.11 99.48 0.71 -9.07 16 10 H -0.27 -10.09 7.11 99.48 0.71 -9.38 16 11 H -0.26 -9.34 7.11 99.48 0.71 -8.63 16 12 S 2.52 128.72 5.63 -56.49 -0.32 128.41 16 13 O -1.02 -53.93 15.91 -128.00 -2.04 -55.97 16 14 O -1.01 -56.15 16.13 -128.00 -2.06 -58.22 16 15 C -0.59 -27.76 5.97 22.24 0.13 -27.63 16 16 C -0.13 -5.44 9.46 22.38 0.21 -5.23 16 17 C 0.14 5.23 6.68 22.49 0.15 5.38 16 18 O -0.33 -10.04 10.50 -92.36 -0.97 -11.01 16 19 C 0.01 0.22 9.81 113.37 1.11 1.34 16 20 C -0.26 -8.21 8.02 22.46 0.18 -8.03 16 21 C 0.14 5.36 6.68 22.49 0.15 5.51 16 22 O -0.33 -10.63 10.49 -92.43 -0.97 -11.60 16 23 C 0.01 0.24 9.81 113.37 1.11 1.35 16 24 C -0.12 -5.41 9.46 22.38 0.21 -5.20 16 25 H 0.05 2.19 7.41 -2.39 -0.02 2.17 16 26 H 0.08 2.51 8.14 -2.38 -0.02 2.49 16 27 H 0.04 1.65 8.14 -2.38 -0.02 1.63 16 28 H 0.10 4.50 5.52 -2.38 -0.01 4.48 16 29 H 0.06 2.66 7.03 -2.39 -0.02 2.64 16 30 H 0.28 12.26 8.31 -92.71 -0.77 11.49 16 31 H 0.13 5.72 7.60 -2.91 -0.02 5.70 16 32 H 0.07 1.03 7.66 -2.39 -0.02 1.02 16 33 H 0.07 1.02 7.66 -2.39 -0.02 1.00 16 34 H 0.13 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.17 3.85 4.54 -2.91 -0.01 3.84 16 36 H 0.07 1.08 7.66 -2.38 -0.02 1.06 16 37 H 0.07 1.09 7.66 -2.38 -0.02 1.07 16 38 H 0.13 1.69 8.14 -2.39 -0.02 1.67 16 39 H 0.13 5.94 7.61 -2.91 -0.02 5.92 16 Total: -1.00 -68.34 337.21 1.57 -66.77 By element: Atomic # 1 Polarization: 24.82 SS G_CDS: 1.07 Total: 25.89 kcal Atomic # 6 Polarization: -48.80 SS G_CDS: 5.60 Total: -43.20 kcal Atomic # 7 Polarization: -79.09 SS G_CDS: -0.78 Total: -79.88 kcal Atomic # 8 Polarization: -130.75 SS G_CDS: -6.04 Total: -136.79 kcal Atomic # 14 Polarization: 36.77 SS G_CDS: 2.03 Total: 38.80 kcal Atomic # 16 Polarization: 128.72 SS G_CDS: -0.32 Total: 128.41 kcal Total: -68.34 1.57 -66.77 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268973329.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.126 kcal (2) G-P(sol) polarization free energy of solvation -68.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds