Wall clock time and date at job start Tue Mar 31 2020 11:25:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35897 * 117.00298 * 2 1 4 4 C 1.38634 * 120.02656 * 0.02562 * 3 2 1 5 5 C 1.38631 * 119.89188 * 179.97438 * 4 3 2 6 6 O 1.35901 * 120.02810 * 179.97438 * 5 4 3 7 7 C 1.42906 * 116.99837 * 0.02562 * 6 5 4 8 8 C 1.38771 * 119.94685 * 359.97438 * 5 4 3 9 9 C 1.38177 * 120.05000 * 0.02562 * 8 5 4 10 10 S 1.76207 * 119.94144 * 179.97438 * 9 8 5 11 11 O 1.42097 * 106.40015 * 336.45528 * 10 9 8 12 12 O 1.42102 * 106.39905 * 203.54339 * 10 9 8 13 13 N 1.65599 * 107.21714 * 90.00126 * 10 9 8 14 14 C 1.46499 * 120.00012 * 65.00092 * 13 10 9 15 15 C 1.53000 * 109.46840 * 165.00017 * 14 13 10 16 16 C 1.50703 * 109.46912 * 179.97438 * 15 14 13 17 17 H 1.08001 * 119.99776 * 0.02562 * 16 15 14 18 18 C 1.37877 * 120.00001 * 179.97438 * 16 15 14 19 19 N 1.31511 * 120.00114 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99955 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.46828 * 90.00636 * 20 18 16 22 22 H 1.48494 * 109.47178 * 210.00332 * 20 18 16 23 23 H 1.48500 * 109.47075 * 330.00579 * 20 18 16 24 24 C 1.38167 * 120.11161 * 0.23354 * 9 8 5 25 25 H 1.09007 * 109.46653 * 59.99924 * 1 2 3 26 26 H 1.09001 * 109.47570 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47003 * 299.99927 * 1 2 3 28 28 H 1.08004 * 120.05588 * 359.97438 * 4 3 2 29 29 H 1.09001 * 109.47078 * 60.00361 * 7 6 5 30 30 H 1.09003 * 109.46997 * 180.02562 * 7 6 5 31 31 H 1.09002 * 109.46924 * 299.99926 * 7 6 5 32 32 H 1.07996 * 119.97739 * 180.02562 * 8 5 4 33 33 H 0.97001 * 119.99797 * 244.99292 * 13 10 9 34 34 H 1.09002 * 109.47391 * 44.99686 * 14 13 10 35 35 H 1.09001 * 109.46813 * 284.99743 * 14 13 10 36 36 H 1.09001 * 109.47194 * 299.99493 * 15 14 13 37 37 H 1.08992 * 109.47399 * 59.99666 * 15 14 13 38 38 H 0.97000 * 120.00354 * 180.02562 * 19 18 16 39 39 H 1.08007 * 119.97286 * 179.72304 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2916 2.3739 0.0005 5 6 1.9239 3.6076 0.0011 6 8 1.1870 4.7495 0.0011 7 6 -0.2346 4.6042 0.0011 8 6 3.3099 3.6756 0.0016 9 6 4.0597 2.5149 0.0011 10 16 5.8194 2.6046 0.0011 11 8 6.1565 3.8733 -0.5429 12 8 6.2837 1.3771 -0.5440 13 7 6.3090 2.6288 1.5829 14 6 6.0726 1.4650 2.4407 15 6 6.9266 1.5814 3.7048 16 6 6.6830 0.3846 4.5876 17 1 5.9888 -0.3826 4.2777 18 6 7.3471 0.2684 5.7903 19 7 8.1927 1.2023 6.1674 20 14 7.0445 -1.2148 6.8848 21 1 8.0045 -2.2925 6.5346 22 1 7.2320 -0.8277 8.3061 23 1 5.6567 -1.7035 6.6838 24 6 3.4318 1.2841 -0.0049 25 1 -0.3633 0.5139 -0.8901 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 0.2129 2.3190 0.0005 29 1 -0.5438 4.0561 0.8911 30 1 -0.7006 5.5896 0.0006 31 1 -0.5438 4.0561 -0.8889 32 1 3.8030 4.6364 0.0024 33 1 6.7524 3.4135 1.9413 34 1 6.3421 0.5562 1.9026 35 1 5.0188 1.4250 2.7165 36 1 7.9804 1.6214 3.4290 37 1 6.6572 2.4902 4.2429 38 1 8.6602 1.1204 7.0133 39 1 4.0200 0.3783 -0.0098 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273580421.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:25:22 Heat of formation + Delta-G solvation = -125.704222 kcal Electronic energy + Delta-G solvation = -24146.873272 eV Core-core repulsion = 20375.591848 eV Total energy + Delta-G solvation = -3771.281423 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.102 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.81434 -39.13072 -37.01838 -36.93348 -35.62701 -35.37370 -32.72737 -30.85236 -30.64993 -29.11992 -28.34767 -26.94665 -24.47512 -23.04738 -22.77180 -21.12615 -19.80230 -18.78078 -17.36597 -17.26910 -16.44539 -16.35018 -16.31120 -16.23346 -16.16386 -15.81413 -15.34529 -15.03257 -14.52918 -14.04295 -13.81353 -13.56819 -13.12267 -12.98425 -12.63817 -12.53424 -11.95132 -11.90102 -11.84529 -11.83569 -11.74471 -11.50429 -11.28728 -11.19062 -11.06321 -10.95578 -10.62167 -10.44321 -9.57208 -9.28506 -9.22711 -8.92015 -8.39464 -8.27461 -6.06517 -4.09728 0.44154 0.72598 1.17224 2.87014 2.93418 3.11363 3.30593 3.36740 3.39312 3.45344 3.95666 4.42354 4.47293 4.48366 4.59481 4.64407 4.74414 4.78715 4.81877 4.84484 5.08014 5.11386 5.13113 5.30403 5.37261 5.78488 5.83285 5.87358 5.93561 6.08497 6.22072 6.49374 6.73965 6.80626 7.14458 7.42105 7.58156 7.67305 7.92274 8.29940 8.96159 9.54787 11.04934 Molecular weight = 315.10amu Principal moments of inertia in cm(-1) A = 0.012322 B = 0.003880 C = 0.003428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2271.799917 B = 7214.731170 C = 8166.921111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.307 6.307 3 C 0.147 3.853 4 C -0.250 4.250 5 C 0.144 3.856 6 O -0.310 6.310 7 C 0.025 3.975 8 C -0.087 4.087 9 C -0.596 4.596 10 S 2.695 3.305 11 O -0.964 6.964 12 O -0.952 6.952 13 N -1.107 6.107 14 C 0.116 3.884 15 C 0.018 3.982 16 C -0.523 4.523 17 H 0.059 0.941 18 C 0.059 3.941 19 N -0.893 5.893 20 Si 0.895 3.105 21 H -0.279 1.279 22 H -0.287 1.287 23 H -0.273 1.273 24 C -0.084 4.084 25 H 0.054 0.946 26 H 0.104 0.896 27 H 0.056 0.944 28 H 0.140 0.860 29 H 0.056 0.944 30 H 0.104 0.896 31 H 0.055 0.945 32 H 0.151 0.849 33 H 0.418 0.582 34 H 0.070 0.930 35 H 0.053 0.947 36 H 0.027 0.973 37 H 0.024 0.976 38 H 0.262 0.738 39 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.362 4.092 -13.107 22.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.220 6.220 3 C 0.101 3.899 4 C -0.270 4.270 5 C 0.098 3.902 6 O -0.223 6.223 7 C -0.070 4.070 8 C -0.107 4.107 9 C -0.680 4.680 10 S 2.782 3.218 11 O -0.954 6.954 12 O -0.942 6.942 13 N -0.869 5.869 14 C -0.008 4.008 15 C -0.021 4.021 16 C -0.563 4.563 17 H 0.078 0.922 18 C -0.143 4.143 19 N -0.532 5.532 20 Si 0.723 3.277 21 H -0.205 1.205 22 H -0.212 1.212 23 H -0.198 1.198 24 C -0.104 4.104 25 H 0.073 0.927 26 H 0.123 0.877 27 H 0.075 0.925 28 H 0.157 0.843 29 H 0.075 0.925 30 H 0.122 0.878 31 H 0.073 0.927 32 H 0.169 0.831 33 H 0.254 0.746 34 H 0.089 0.911 35 H 0.071 0.929 36 H 0.045 0.955 37 H 0.043 0.957 38 H 0.072 0.928 39 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -17.713 4.001 -13.776 22.793 hybrid contribution -1.357 -0.502 1.229 1.898 sum -19.070 3.499 -12.547 23.094 Atomic orbital electron populations 1.23113 0.78289 1.04413 1.01187 1.86149 1.21447 1.26122 1.88319 1.18751 0.92051 0.83871 0.95251 1.21497 1.00709 0.92137 1.12625 1.18731 0.91196 0.84664 0.95613 1.86125 1.19177 1.28504 1.88485 1.23108 0.78401 1.04213 1.01279 1.20030 0.90647 0.98369 1.01642 1.31030 1.27772 0.97440 1.11752 1.01945 0.73166 0.73583 0.73113 1.93570 1.82498 1.42263 1.77105 1.93594 1.77990 1.45847 1.76792 1.55470 1.73859 1.26953 1.30658 1.21703 1.00420 0.85036 0.93666 1.19290 0.95163 0.97971 0.89694 1.21092 1.25373 1.06293 1.03497 0.92227 1.24993 0.95012 0.96401 0.97848 1.69955 1.27361 1.33507 1.22330 0.86541 0.78687 0.82805 0.79653 1.20527 1.21241 1.19811 1.20130 0.91856 0.97486 1.00959 0.92737 0.87743 0.92528 0.84252 0.92527 0.87813 0.92688 0.83143 0.74636 0.91121 0.92863 0.95468 0.95730 0.92843 0.82864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 9.81 101.05 0.99 1.17 16 2 O -0.31 -3.67 10.50 -19.42 -0.20 -3.87 16 3 C 0.15 1.93 6.68 -39.24 -0.26 1.66 16 4 C -0.25 -2.83 8.02 -39.29 -0.32 -3.15 16 5 C 0.14 1.82 6.68 -39.24 -0.26 1.56 16 6 O -0.31 -3.45 10.50 -19.43 -0.20 -3.66 16 7 C 0.03 0.16 9.81 101.05 0.99 1.16 16 8 C -0.09 -1.21 9.46 -39.41 -0.37 -1.58 16 9 C -0.60 -8.79 5.94 -39.63 -0.24 -9.03 16 10 S 2.70 43.28 5.74 -107.50 -0.62 42.67 16 11 O -0.96 -16.66 17.28 -57.17 -0.99 -17.65 16 12 O -0.95 -17.64 16.74 -57.17 -0.96 -18.60 16 13 N -1.11 -18.49 6.00 -10.61 -0.06 -18.55 16 14 C 0.12 2.29 6.16 -4.04 -0.02 2.26 16 15 C 0.02 0.43 5.12 -27.88 -0.14 0.29 16 16 C -0.52 -14.24 9.11 -34.44 -0.31 -14.55 16 17 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 18 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 19 N -0.89 -26.06 13.29 55.43 0.74 -25.32 16 20 Si 0.90 21.15 29.54 -169.99 -5.02 16.13 16 21 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 22 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 23 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 24 C -0.08 -1.23 9.46 -39.41 -0.37 -1.60 16 25 H 0.05 0.31 7.66 -51.93 -0.40 -0.09 16 26 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.06 0.35 7.66 -51.93 -0.40 -0.05 16 28 H 0.14 1.11 4.54 -52.48 -0.24 0.88 16 29 H 0.06 0.32 7.66 -51.93 -0.40 -0.08 16 30 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.05 0.29 7.66 -51.93 -0.40 -0.11 16 32 H 0.15 1.94 7.61 -52.49 -0.40 1.54 16 33 H 0.42 6.40 8.65 -34.47 -0.30 6.10 16 34 H 0.07 1.39 7.75 -51.93 -0.40 0.99 16 35 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 36 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 39 H 0.15 2.19 7.60 -52.48 -0.40 1.79 16 LS Contribution 346.16 15.07 5.22 5.22 Total: -1.00 -34.52 346.16 -7.50 -42.02 By element: Atomic # 1 Polarization: 6.86 SS G_CDS: -4.98 Total: 1.88 kcal Atomic # 6 Polarization: -19.84 SS G_CDS: -0.42 Total: -20.25 kcal Atomic # 7 Polarization: -44.55 SS G_CDS: 0.67 Total: -43.88 kcal Atomic # 8 Polarization: -41.43 SS G_CDS: -2.35 Total: -43.78 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Atomic # 16 Polarization: 43.28 SS G_CDS: -0.62 Total: 42.67 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -34.52 -7.50 -42.02 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273580421.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.688 kcal (2) G-P(sol) polarization free energy of solvation -34.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds