Wall clock time and date at job start Tue Mar 31 2020 11:25:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35897 * 117.00298 * 2 1 4 4 C 1.38634 * 120.02656 * 0.02562 * 3 2 1 5 5 C 1.38631 * 119.89188 * 179.97438 * 4 3 2 6 6 O 1.35901 * 120.02810 * 179.97438 * 5 4 3 7 7 C 1.42906 * 116.99837 * 0.02562 * 6 5 4 8 8 C 1.38771 * 119.94685 * 359.97438 * 5 4 3 9 9 C 1.38177 * 120.05000 * 0.02562 * 8 5 4 10 10 S 1.76207 * 119.94144 * 179.97438 * 9 8 5 11 11 O 1.42097 * 106.40015 * 336.45528 * 10 9 8 12 12 O 1.42102 * 106.39905 * 203.54339 * 10 9 8 13 13 N 1.65599 * 107.21714 * 90.00126 * 10 9 8 14 14 C 1.46499 * 120.00012 * 65.00092 * 13 10 9 15 15 C 1.53000 * 109.46840 * 165.00017 * 14 13 10 16 16 C 1.50703 * 109.46912 * 179.97438 * 15 14 13 17 17 H 1.08001 * 119.99776 * 0.02562 * 16 15 14 18 18 C 1.37877 * 120.00001 * 179.97438 * 16 15 14 19 19 N 1.31511 * 120.00114 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99955 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.46828 * 90.00636 * 20 18 16 22 22 H 1.48494 * 109.47178 * 210.00332 * 20 18 16 23 23 H 1.48500 * 109.47075 * 330.00579 * 20 18 16 24 24 C 1.38167 * 120.11161 * 0.23354 * 9 8 5 25 25 H 1.09007 * 109.46653 * 59.99924 * 1 2 3 26 26 H 1.09001 * 109.47570 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47003 * 299.99927 * 1 2 3 28 28 H 1.08004 * 120.05588 * 359.97438 * 4 3 2 29 29 H 1.09001 * 109.47078 * 60.00361 * 7 6 5 30 30 H 1.09003 * 109.46997 * 180.02562 * 7 6 5 31 31 H 1.09002 * 109.46924 * 299.99926 * 7 6 5 32 32 H 1.07996 * 119.97739 * 180.02562 * 8 5 4 33 33 H 0.97001 * 119.99797 * 244.99292 * 13 10 9 34 34 H 1.09002 * 109.47391 * 44.99686 * 14 13 10 35 35 H 1.09001 * 109.46813 * 284.99743 * 14 13 10 36 36 H 1.09001 * 109.47194 * 299.99493 * 15 14 13 37 37 H 1.08992 * 109.47399 * 59.99666 * 15 14 13 38 38 H 0.97000 * 120.00354 * 180.02562 * 19 18 16 39 39 H 1.08007 * 119.97286 * 179.72304 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2916 2.3739 0.0005 5 6 1.9239 3.6076 0.0011 6 8 1.1870 4.7495 0.0011 7 6 -0.2346 4.6042 0.0011 8 6 3.3099 3.6756 0.0016 9 6 4.0597 2.5149 0.0011 10 16 5.8194 2.6046 0.0011 11 8 6.1565 3.8733 -0.5429 12 8 6.2837 1.3771 -0.5440 13 7 6.3090 2.6288 1.5829 14 6 6.0726 1.4650 2.4407 15 6 6.9266 1.5814 3.7048 16 6 6.6830 0.3846 4.5876 17 1 5.9888 -0.3826 4.2777 18 6 7.3471 0.2684 5.7903 19 7 8.1927 1.2023 6.1674 20 14 7.0445 -1.2148 6.8848 21 1 8.0045 -2.2925 6.5346 22 1 7.2320 -0.8277 8.3061 23 1 5.6567 -1.7035 6.6838 24 6 3.4318 1.2841 -0.0049 25 1 -0.3633 0.5139 -0.8901 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 0.2129 2.3190 0.0005 29 1 -0.5438 4.0561 0.8911 30 1 -0.7006 5.5896 0.0006 31 1 -0.5438 4.0561 -0.8889 32 1 3.8030 4.6364 0.0024 33 1 6.7524 3.4135 1.9413 34 1 6.3421 0.5562 1.9026 35 1 5.0188 1.4250 2.7165 36 1 7.9804 1.6214 3.4290 37 1 6.6572 2.4902 4.2429 38 1 8.6602 1.1204 7.0133 39 1 4.0200 0.3783 -0.0098 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273580421.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:25:21 Heat of formation + Delta-G solvation = -152.209977 kcal Electronic energy + Delta-G solvation = -24148.022647 eV Core-core repulsion = 20375.591848 eV Total energy + Delta-G solvation = -3772.430799 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.102 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.69892 -39.93341 -38.40736 -37.85007 -37.03287 -36.99918 -34.71708 -31.81783 -31.53327 -30.99695 -28.95255 -27.58715 -26.40923 -24.03241 -23.71938 -22.94148 -20.83834 -19.99917 -18.76821 -18.24841 -18.11825 -17.39598 -17.38488 -17.29329 -17.04490 -16.70282 -16.49298 -16.41245 -15.75458 -15.51932 -15.47635 -14.42297 -14.40404 -13.92518 -13.85837 -13.52220 -13.40497 -13.28363 -13.23543 -13.13191 -12.97194 -12.56118 -12.54331 -12.44410 -12.36541 -12.31701 -12.08407 -11.91951 -11.48207 -11.29039 -10.61109 -10.33876 -10.14493 -9.23950 -8.18388 -6.28782 -0.75593 -0.41144 0.18099 1.44864 1.45954 1.56581 1.89516 2.11845 2.16678 2.32326 2.45324 2.68697 3.16673 3.35461 3.66463 3.70484 3.78885 4.04433 4.21522 4.22990 4.31979 4.32763 4.33063 4.34494 4.56228 4.67394 4.69904 4.82427 4.88005 4.90334 4.93258 4.98652 5.14923 5.52415 5.66405 5.83566 6.02930 6.04140 6.25056 6.31402 6.86756 7.40294 8.93726 Molecular weight = 315.10amu Principal moments of inertia in cm(-1) A = 0.012322 B = 0.003880 C = 0.003428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2271.799917 B = 7214.731170 C = 8166.921111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.326 6.326 3 C 0.145 3.855 4 C -0.238 4.238 5 C 0.145 3.855 6 O -0.324 6.324 7 C 0.011 3.989 8 C -0.105 4.105 9 C -0.598 4.598 10 S 2.716 3.284 11 O -0.977 6.977 12 O -0.980 6.980 13 N -1.107 6.107 14 C 0.131 3.869 15 C 0.020 3.980 16 C -0.543 4.543 17 H 0.067 0.933 18 C 0.003 3.997 19 N -0.931 5.931 20 Si 0.964 3.036 21 H -0.275 1.275 22 H -0.284 1.284 23 H -0.261 1.261 24 C -0.110 4.110 25 H 0.073 0.927 26 H 0.123 0.877 27 H 0.069 0.931 28 H 0.176 0.824 29 H 0.068 0.932 30 H 0.125 0.875 31 H 0.071 0.929 32 H 0.153 0.847 33 H 0.424 0.576 34 H 0.069 0.931 35 H 0.067 0.933 36 H 0.003 0.997 37 H 0.010 0.990 38 H 0.264 0.736 39 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.385 3.546 -13.254 25.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.239 6.239 3 C 0.098 3.902 4 C -0.258 4.258 5 C 0.098 3.902 6 O -0.237 6.237 7 C -0.083 4.083 8 C -0.126 4.126 9 C -0.685 4.685 10 S 2.806 3.194 11 O -0.967 6.967 12 O -0.970 6.970 13 N -0.869 5.869 14 C 0.006 3.994 15 C -0.019 4.019 16 C -0.582 4.582 17 H 0.086 0.914 18 C -0.195 4.195 19 N -0.570 5.570 20 Si 0.789 3.211 21 H -0.200 1.200 22 H -0.209 1.209 23 H -0.185 1.185 24 C -0.130 4.130 25 H 0.091 0.909 26 H 0.141 0.859 27 H 0.088 0.912 28 H 0.193 0.807 29 H 0.087 0.913 30 H 0.143 0.857 31 H 0.090 0.910 32 H 0.171 0.829 33 H 0.260 0.740 34 H 0.088 0.912 35 H 0.086 0.914 36 H 0.021 0.979 37 H 0.028 0.972 38 H 0.073 0.927 39 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -20.723 3.461 -13.931 25.209 hybrid contribution -0.587 -0.277 1.215 1.378 sum -21.310 3.184 -12.716 25.019 Atomic orbital electron populations 1.23508 0.75754 1.06319 1.02696 1.86136 1.24114 1.25632 1.88045 1.18796 0.91678 0.84986 0.94697 1.21799 1.02428 0.90851 1.10689 1.18782 0.90936 0.85699 0.94761 1.86123 1.21524 1.27984 1.88086 1.23509 0.75894 1.06227 1.02667 1.20171 0.91847 0.98103 1.02436 1.30522 1.26151 0.98193 1.13671 1.01063 0.73552 0.72573 0.72211 1.93546 1.83347 1.42718 1.77100 1.93553 1.79291 1.46923 1.77208 1.55314 1.74608 1.26410 1.30558 1.21353 1.00130 0.85984 0.91953 1.19166 0.94593 0.96684 0.91480 1.21568 1.25340 1.07169 1.04089 0.91441 1.25909 0.94730 0.99366 0.99484 1.70082 1.28464 1.35563 1.22939 0.85460 0.79108 0.79054 0.77505 1.20013 1.20919 1.18511 1.20203 0.93153 0.97098 1.02520 0.90856 0.85886 0.91241 0.80661 0.91301 0.85722 0.90993 0.82908 0.74017 0.91218 0.91450 0.97856 0.97207 0.92739 0.83524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.12 9.81 113.37 1.11 1.23 16 2 O -0.33 -7.13 10.50 -92.39 -0.97 -8.10 16 3 C 0.15 3.57 6.68 22.49 0.15 3.72 16 4 C -0.24 -4.75 8.02 22.46 0.18 -4.57 16 5 C 0.15 3.39 6.68 22.49 0.15 3.54 16 6 O -0.32 -6.44 10.50 -92.43 -0.97 -7.42 16 7 C 0.01 0.10 9.81 113.37 1.11 1.22 16 8 C -0.11 -2.87 9.46 22.38 0.21 -2.66 16 9 C -0.60 -17.65 5.94 22.24 0.13 -17.52 16 10 S 2.72 88.96 5.74 -56.49 -0.32 88.64 16 11 O -0.98 -34.22 17.28 -128.00 -2.21 -36.43 16 12 O -0.98 -37.17 16.74 -128.00 -2.14 -39.31 16 13 N -1.11 -37.82 6.00 -187.49 -1.12 -38.95 16 14 C 0.13 5.24 6.16 86.38 0.53 5.77 16 15 C 0.02 0.98 5.12 29.85 0.15 1.14 16 16 C -0.54 -29.75 9.11 25.60 0.23 -29.52 16 17 H 0.07 3.50 7.74 -2.91 -0.02 3.48 16 18 C 0.00 0.19 5.46 84.66 0.46 0.65 16 19 N -0.93 -55.21 13.29 21.45 0.28 -54.93 16 20 Si 0.96 43.22 29.54 68.60 2.03 45.24 16 21 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 22 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 23 H -0.26 -11.09 7.11 99.48 0.71 -10.38 16 24 C -0.11 -3.17 9.46 22.38 0.21 -2.96 16 25 H 0.07 0.54 7.66 -2.38 -0.02 0.52 16 26 H 0.12 0.88 8.14 -2.39 -0.02 0.86 16 27 H 0.07 0.59 7.66 -2.39 -0.02 0.58 16 28 H 0.18 2.05 4.54 -2.91 -0.01 2.03 16 29 H 0.07 0.51 7.66 -2.39 -0.02 0.49 16 30 H 0.12 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.07 0.46 7.66 -2.39 -0.02 0.45 16 32 H 0.15 3.94 7.61 -2.91 -0.02 3.92 16 33 H 0.42 13.40 8.65 -96.75 -0.84 12.56 16 34 H 0.07 2.79 7.75 -2.39 -0.02 2.77 16 35 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 36 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 37 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 38 H 0.26 14.75 8.31 -92.71 -0.77 13.98 16 39 H 0.15 4.30 7.60 -2.91 -0.02 4.27 16 Total: -1.00 -74.46 346.16 -0.55 -75.01 By element: Atomic # 1 Polarization: 15.95 SS G_CDS: 0.24 Total: 16.20 kcal Atomic # 6 Polarization: -44.60 SS G_CDS: 4.64 Total: -39.96 kcal Atomic # 7 Polarization: -93.03 SS G_CDS: -0.84 Total: -93.87 kcal Atomic # 8 Polarization: -84.97 SS G_CDS: -6.29 Total: -91.26 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.24 kcal Atomic # 16 Polarization: 88.96 SS G_CDS: -0.32 Total: 88.64 kcal Total: -74.46 -0.55 -75.01 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273580421.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.200 kcal (2) G-P(sol) polarization free energy of solvation -74.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds