Wall clock time and date at job start Tue Mar 31 2020 11:25:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35901 * 116.99516 * 2 1 4 4 C 1.38772 * 120.02835 * 0.02562 * 3 2 1 5 5 C 1.38182 * 120.05496 * 179.97438 * 4 3 2 6 6 C 1.38171 * 120.10615 * 0.02562 * 5 4 3 7 7 C 1.38769 * 120.06065 * 359.97438 * 6 5 4 8 8 O 1.35898 * 120.03000 * 180.02562 * 7 6 5 9 9 C 1.42897 * 117.00036 * 359.97438 * 8 7 6 10 10 C 1.38635 * 119.94260 * 0.02562 * 7 6 5 11 11 S 1.76202 * 120.05644 * 179.72573 * 10 7 6 12 12 O 1.42090 * 106.40634 * 203.53785 * 11 10 7 13 13 O 1.42109 * 106.39934 * 336.46095 * 11 10 7 14 14 N 1.65603 * 107.21944 * 89.99685 * 11 10 7 15 15 C 1.46498 * 119.99744 * 65.00298 * 14 11 10 16 16 C 1.53007 * 109.46883 * 165.00189 * 15 14 11 17 17 C 1.50702 * 109.46595 * 180.02562 * 16 15 14 18 18 H 1.07989 * 120.00702 * 359.97438 * 17 16 15 19 19 C 1.37879 * 119.99478 * 180.02562 * 17 16 15 20 20 N 1.31519 * 120.00042 * 180.02562 * 19 17 16 21 21 Si 1.86806 * 120.00038 * 359.97438 * 19 17 16 22 22 H 1.48503 * 109.46739 * 90.00488 * 21 19 17 23 23 H 1.48499 * 109.46852 * 210.00354 * 21 19 17 24 24 H 1.48494 * 109.47369 * 330.00409 * 21 19 17 25 25 H 1.08996 * 109.47058 * 60.00900 * 1 2 3 26 26 H 1.09009 * 109.46629 * 180.02562 * 1 2 3 27 27 H 1.08991 * 109.47444 * 300.00059 * 1 2 3 28 28 H 1.07991 * 119.97311 * 359.97438 * 4 3 2 29 29 H 1.07999 * 119.94477 * 180.02562 * 5 4 3 30 30 H 1.08002 * 119.97247 * 179.97438 * 6 5 4 31 31 H 1.08997 * 109.47228 * 60.00215 * 9 8 7 32 32 H 1.09003 * 109.46716 * 180.02562 * 9 8 7 33 33 H 1.08996 * 109.47025 * 300.00092 * 9 8 7 34 34 H 0.96997 * 120.00125 * 245.00350 * 14 11 10 35 35 H 1.09002 * 109.46996 * 284.99880 * 15 14 11 36 36 H 1.08992 * 109.47331 * 45.00092 * 15 14 11 37 37 H 1.09002 * 109.47052 * 299.99657 * 16 15 14 38 38 H 1.09000 * 109.46932 * 59.99799 * 16 15 14 39 39 H 0.96993 * 120.00010 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2905 2.3751 0.0005 5 6 1.9172 3.6066 0.0011 6 6 3.2968 3.6823 0.0005 7 6 4.0566 2.5211 0.0000 8 8 5.4135 2.5962 0.0000 9 6 5.9909 3.9033 0.0000 10 6 3.4303 1.2843 -0.0005 11 16 4.3921 -0.1920 -0.0085 12 8 3.5618 -1.2090 -0.5520 13 8 5.6560 0.1555 -0.5575 14 7 4.6666 -0.6069 1.5710 15 6 3.5457 -0.9894 2.4332 16 6 4.0814 -1.6722 3.6933 17 6 2.9283 -2.0662 4.5799 18 1 1.9148 -1.8509 4.2755 19 6 3.1673 -2.7008 5.7805 20 7 2.1610 -3.0452 6.5541 21 14 4.9205 -3.0727 6.3075 22 1 5.4552 -1.9293 7.0898 23 1 4.9356 -4.2973 7.1474 24 1 5.7642 -3.2872 5.1045 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0278 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 0.2121 2.3185 0.0005 29 1 1.3276 4.5115 0.0019 30 1 3.7844 4.6460 0.0005 31 1 5.6678 4.4433 0.8900 32 1 7.0778 3.8203 -0.0005 33 1 5.6677 4.4432 -0.8899 34 1 5.5695 -0.5966 1.9253 35 1 2.9828 -0.0991 2.7138 36 1 2.8929 -1.6778 1.8966 37 1 4.6443 -2.5625 3.4128 38 1 4.7342 -0.9837 4.2300 39 1 2.3291 -3.4919 7.3984 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274812821.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:25:23 Heat of formation + Delta-G solvation = -144.294671 kcal Electronic energy + Delta-G solvation = -25135.848346 eV Core-core repulsion = 21363.760781 eV Total energy + Delta-G solvation = -3772.087566 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.102 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.59091 -40.26616 -38.06623 -37.48034 -37.05723 -36.79839 -34.69631 -32.48590 -31.49336 -30.64997 -28.77472 -27.66431 -26.38158 -24.45261 -22.94386 -22.65549 -20.71508 -19.90837 -19.02333 -18.51003 -18.02650 -17.97844 -17.46018 -17.02270 -16.66475 -16.51846 -16.23854 -15.96150 -15.83498 -15.51313 -15.44083 -14.61924 -14.28563 -13.84596 -13.77043 -13.46594 -13.40714 -13.19704 -13.15528 -13.00528 -12.91805 -12.80489 -12.44864 -12.44207 -12.25696 -11.81259 -11.77869 -11.71822 -11.48944 -11.43716 -10.76469 -10.37971 -10.17802 -9.22588 -8.27888 -6.32588 -0.50552 -0.15041 0.30710 1.38060 1.40993 1.52370 1.81453 2.08494 2.37945 2.45139 2.54472 2.83106 3.07547 3.34143 3.77732 3.92538 4.06161 4.13162 4.21687 4.32180 4.37759 4.39277 4.40306 4.47105 4.47686 4.68321 4.74954 4.76000 4.85961 4.96176 5.05855 5.26667 5.36884 5.39844 5.44505 5.62246 6.10754 6.15113 6.21700 6.28866 6.73869 7.31517 8.88242 Molecular weight = 315.10amu Principal moments of inertia in cm(-1) A = 0.014166 B = 0.004672 C = 0.004223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1976.027111 B = 5991.941500 C = 6628.856311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.318 6.318 3 C 0.237 3.763 4 C -0.271 4.271 5 C 0.020 3.980 6 C -0.268 4.268 7 C 0.242 3.758 8 O -0.318 6.318 9 C 0.010 3.990 10 C -0.770 4.770 11 S 2.711 3.289 12 O -0.980 6.980 13 O -0.975 6.975 14 N -1.112 6.112 15 C 0.147 3.853 16 C -0.017 4.017 17 C -0.531 4.531 18 H 0.040 0.960 19 C 0.010 3.990 20 N -0.947 5.947 21 Si 0.946 3.054 22 H -0.263 1.263 23 H -0.285 1.285 24 H -0.248 1.248 25 H 0.085 0.915 26 H 0.112 0.888 27 H 0.074 0.926 28 H 0.165 0.835 29 H 0.179 0.821 30 H 0.171 0.829 31 H 0.078 0.922 32 H 0.119 0.881 33 H 0.079 0.921 34 H 0.421 0.579 35 H 0.056 0.944 36 H 0.062 0.938 37 H 0.027 0.973 38 H 0.033 0.967 39 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.379 18.796 -14.774 23.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.230 6.230 3 C 0.188 3.812 4 C -0.290 4.290 5 C 0.002 3.998 6 C -0.287 4.287 7 C 0.192 3.808 8 O -0.230 6.230 9 C -0.084 4.084 10 C -0.861 4.861 11 S 2.803 3.197 12 O -0.970 6.970 13 O -0.966 6.966 14 N -0.873 5.873 15 C 0.021 3.979 16 C -0.056 4.056 17 C -0.570 4.570 18 H 0.059 0.941 19 C -0.187 4.187 20 N -0.587 5.587 21 Si 0.769 3.231 22 H -0.188 1.188 23 H -0.210 1.210 24 H -0.171 1.171 25 H 0.103 0.897 26 H 0.130 0.870 27 H 0.093 0.907 28 H 0.182 0.818 29 H 0.196 0.804 30 H 0.188 0.812 31 H 0.097 0.903 32 H 0.137 0.863 33 H 0.098 0.902 34 H 0.256 0.744 35 H 0.074 0.926 36 H 0.080 0.920 37 H 0.046 0.954 38 H 0.052 0.948 39 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 1.667 17.894 -15.433 23.688 hybrid contribution 0.112 0.256 1.059 1.095 sum 1.779 18.150 -14.374 23.220 Atomic orbital electron populations 1.23549 0.75318 1.06027 1.03322 1.86336 1.24577 1.25943 1.86125 1.18401 0.89754 0.86386 0.86672 1.21623 1.01867 0.91549 1.13978 1.21513 0.93802 0.98252 0.86209 1.21613 0.95489 0.97700 1.13895 1.18277 0.83454 0.92324 0.86730 1.86298 1.16039 1.34381 1.86290 1.23597 1.00429 0.80926 1.03429 1.29039 1.04782 1.17639 1.34625 1.00994 0.72767 0.73642 0.72346 1.93541 1.70106 1.56336 1.77031 1.93535 1.41439 1.84917 1.76677 1.55400 1.16578 1.84283 1.31007 1.20992 0.87010 0.98483 0.91370 1.19706 0.96448 0.96480 0.92927 1.21261 0.93597 1.38365 1.03763 0.94124 1.25913 1.01726 0.94795 0.96289 1.70044 1.33430 1.42365 1.12870 0.85722 0.79992 0.78196 0.79167 1.18830 1.21049 1.17110 0.89699 0.87004 0.90713 0.81762 0.80394 0.81192 0.90303 0.86316 0.90234 0.74375 0.92610 0.91960 0.95421 0.94837 0.92401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.24 9.81 113.37 1.11 1.36 16 2 O -0.32 -10.19 8.33 -71.65 -0.60 -10.79 16 3 C 0.24 7.05 6.63 22.49 0.15 7.20 16 4 C -0.27 -5.66 9.04 22.38 0.20 -5.46 16 5 C 0.02 0.33 10.04 22.24 0.22 0.55 16 6 C -0.27 -5.02 9.04 22.38 0.20 -4.82 16 7 C 0.24 6.56 6.63 22.49 0.15 6.71 16 8 O -0.32 -8.50 8.34 -71.66 -0.60 -9.10 16 9 C 0.01 0.14 9.81 113.37 1.11 1.25 16 10 C -0.77 -24.92 5.97 22.46 0.13 -24.79 16 11 S 2.71 100.67 5.58 -56.49 -0.32 100.35 16 12 O -0.98 -41.82 15.49 -119.43 -1.85 -43.67 16 13 O -0.98 -38.00 16.03 -119.44 -1.91 -39.91 16 14 N -1.11 -40.53 6.00 -187.49 -1.12 -41.65 16 15 C 0.15 6.17 6.16 86.38 0.53 6.70 16 16 C -0.02 -0.78 4.18 29.85 0.12 -0.66 16 17 C -0.53 -30.41 9.66 25.60 0.25 -30.16 16 18 H 0.04 2.53 7.99 -2.92 -0.02 2.50 16 19 C 0.01 0.59 5.47 84.65 0.46 1.05 16 20 N -0.95 -58.68 13.96 21.45 0.30 -58.38 16 21 Si 0.95 43.82 27.47 68.60 1.88 45.70 16 22 H -0.26 -11.58 7.11 99.48 0.71 -10.88 16 23 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 24 H -0.25 -10.73 6.54 99.48 0.65 -10.08 16 25 H 0.08 1.28 7.66 -2.39 -0.02 1.26 16 26 H 0.11 2.24 8.14 -2.38 -0.02 2.22 16 27 H 0.07 1.35 7.66 -2.39 -0.02 1.34 16 28 H 0.16 2.39 6.29 -2.92 -0.02 2.37 16 29 H 0.18 1.26 8.06 -2.91 -0.02 1.23 16 30 H 0.17 1.88 6.29 -2.91 -0.02 1.86 16 31 H 0.08 0.83 7.66 -2.39 -0.02 0.82 16 32 H 0.12 1.38 8.14 -2.39 -0.02 1.37 16 33 H 0.08 0.81 7.66 -2.39 -0.02 0.79 16 34 H 0.42 13.57 8.65 -96.75 -0.84 12.73 16 35 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 36 H 0.06 2.77 7.75 -2.39 -0.02 2.75 16 37 H 0.03 1.29 7.20 -2.39 -0.02 1.27 16 38 H 0.03 1.48 7.57 -2.39 -0.02 1.46 16 39 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 Total: -1.00 -81.52 337.57 0.63 -80.89 By element: Atomic # 1 Polarization: 17.44 SS G_CDS: 0.19 Total: 17.63 kcal Atomic # 6 Polarization: -45.72 SS G_CDS: 4.65 Total: -41.07 kcal Atomic # 7 Polarization: -99.21 SS G_CDS: -0.83 Total: -100.04 kcal Atomic # 8 Polarization: -98.51 SS G_CDS: -4.96 Total: -103.47 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 1.88 Total: 45.70 kcal Atomic # 16 Polarization: 100.67 SS G_CDS: -0.32 Total: 100.35 kcal Total: -81.52 0.63 -80.89 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274812821.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.403 kcal (2) G-P(sol) polarization free energy of solvation -81.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds