Wall clock time and date at job start Tue Mar 31 2020 10:39:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47312 * 2 1 4 4 C 1.53002 * 109.47205 * 240.00292 * 2 1 3 5 5 C 1.53001 * 109.47441 * 120.00131 * 2 1 3 6 6 N 1.46506 * 109.46941 * 64.95307 * 5 2 1 7 7 C 1.46498 * 119.99890 * 273.91887 * 6 5 2 8 8 C 1.50704 * 109.46702 * 262.30284 * 7 6 5 9 9 H 1.07994 * 120.00272 * 0.02562 * 8 7 6 10 10 C 1.37880 * 119.99752 * 180.02562 * 8 7 6 11 11 N 1.31513 * 119.99981 * 359.97438 * 10 8 7 12 12 Si 1.86803 * 119.99900 * 180.02562 * 10 8 7 13 13 H 1.48499 * 109.47130 * 59.99627 * 12 10 8 14 14 H 1.48500 * 109.47300 * 179.97438 * 12 10 8 15 15 H 1.48499 * 109.46952 * 299.99802 * 12 10 8 16 16 C 1.34778 * 119.99804 * 93.91084 * 6 5 2 17 17 O 1.21714 * 119.99832 * 2.27107 * 16 6 5 18 18 C 1.46439 * 119.99649 * 182.26036 * 16 6 5 19 19 S 1.75824 * 125.46461 * 351.50380 * 18 16 6 20 20 C 1.70614 * 91.58612 * 179.97438 * 19 18 16 21 21 C 1.33776 * 110.99801 * 0.02562 * 20 19 18 22 22 C 1.36793 * 125.45760 * 171.50069 * 18 16 6 23 23 Cl 1.73600 * 123.38132 * 0.02562 * 22 18 16 24 24 H 1.08996 * 109.47193 * 299.99546 * 1 2 3 25 25 H 1.09002 * 109.46981 * 60.00235 * 1 2 3 26 26 H 1.09004 * 109.46976 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47650 * 179.97438 * 3 2 1 28 28 H 1.08995 * 109.47525 * 300.00396 * 3 2 1 29 29 H 1.09008 * 109.46946 * 59.99855 * 3 2 1 30 30 H 1.08996 * 109.47327 * 305.05199 * 4 2 1 31 31 H 1.09003 * 109.46996 * 65.05265 * 4 2 1 32 32 H 1.09007 * 109.46960 * 185.05038 * 4 2 1 33 33 H 1.08999 * 109.46777 * 304.95890 * 5 2 1 34 34 H 1.08995 * 109.47571 * 184.95098 * 5 2 1 35 35 H 1.08993 * 109.47402 * 22.30174 * 7 6 5 36 36 H 1.09002 * 109.47348 * 142.30638 * 7 6 5 37 37 H 0.97002 * 119.99556 * 180.02562 * 11 10 8 38 38 H 1.07995 * 124.50164 * 179.73127 * 20 19 18 39 39 H 1.07996 * 122.45270 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0400 -0.7213 1.2492 6 7 1.6515 -2.1327 1.1910 7 6 0.3373 -2.5516 1.6846 8 6 0.4733 -3.0787 3.0899 9 1 1.4417 -3.0992 3.5676 10 6 -0.6386 -3.5348 3.7657 11 7 -1.8179 -3.5094 3.1841 12 14 -0.4702 -4.1875 5.5078 13 1 0.0707 -3.1195 6.3865 14 1 -1.8022 -4.6123 6.0083 15 1 0.4549 -5.3492 5.5139 16 6 2.5031 -3.0456 0.6832 17 8 3.6105 -2.7041 0.3111 18 6 2.0959 -4.4484 0.5793 19 16 0.6282 -5.1377 1.2591 20 6 1.0204 -6.6857 0.6585 21 6 2.1818 -6.6624 -0.0050 22 6 2.7966 -5.4327 -0.0622 23 17 4.3098 -5.1580 -0.8675 24 1 -0.3633 0.5137 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1300 1.4426 0.0005 28 1 1.6767 1.9564 -0.8899 29 1 1.6766 1.9564 0.8900 30 1 1.6047 -1.7194 -1.2958 31 1 1.7524 -0.1577 -2.1369 32 1 3.1263 -0.8002 -1.2052 33 1 1.6060 -0.2613 2.1369 34 1 3.1264 -0.6451 1.2947 35 1 -0.3411 -1.6986 1.6806 36 1 -0.0603 -3.3351 1.0396 37 1 -2.6001 -3.8300 3.6597 38 1 0.4142 -7.5682 0.7996 39 1 2.6059 -7.5441 -0.4622 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000285402357.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:39:04 Heat of formation + Delta-G solvation = -16.475629 kcal Electronic energy + Delta-G solvation = -23180.027177 eV Core-core repulsion = 19854.191425 eV Total energy + Delta-G solvation = -3325.835752 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 315.080 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.52001 -37.49646 -36.34510 -35.34899 -34.55755 -32.57494 -29.37879 -27.91807 -26.95055 -26.79318 -25.87273 -23.88218 -22.98623 -20.36554 -18.52587 -18.38321 -17.25468 -16.83214 -15.72202 -15.22942 -14.93143 -14.78948 -14.42666 -13.89476 -13.61563 -13.25332 -12.85867 -12.73284 -12.61788 -12.51382 -12.27960 -12.04747 -11.90162 -11.79359 -11.27844 -11.20881 -11.07042 -11.03098 -10.79391 -10.64654 -10.47505 -10.34653 -10.28001 -10.14501 -9.89186 -9.32511 -9.07238 -8.80424 -8.19970 -7.83741 -7.52592 -6.43200 -4.46351 1.16720 2.09115 2.74870 2.87084 3.12495 3.17670 3.21363 3.23811 3.85389 3.93266 4.16939 4.90296 5.16576 5.17636 5.30772 5.39710 5.62432 5.77830 5.85595 5.88735 5.93130 6.11018 6.16723 6.20016 6.27066 6.32031 6.38752 6.43662 6.51177 6.54037 6.60360 6.68542 6.73868 6.81183 6.90465 7.39310 7.54202 7.72382 8.19397 8.56118 8.97913 9.14887 10.59956 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.009678 B = 0.008399 C = 0.005113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2892.361278 B = 3332.740723 C = 5475.437956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.085 4.085 3 C -0.135 4.135 4 C -0.132 4.132 5 C 0.133 3.867 6 N -0.593 5.593 7 C 0.222 3.778 8 C -0.539 4.539 9 H 0.069 0.931 10 C 0.076 3.924 11 N -0.876 5.876 12 Si 0.890 3.110 13 H -0.272 1.272 14 H -0.282 1.282 15 H -0.270 1.270 16 C 0.589 3.411 17 O -0.544 6.544 18 C -0.290 4.290 19 S 0.440 5.560 20 C -0.334 4.334 21 C -0.159 4.159 22 C -0.004 4.004 23 Cl -0.049 7.049 24 H 0.054 0.946 25 H 0.045 0.955 26 H 0.066 0.934 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.053 0.947 30 H 0.051 0.949 31 H 0.042 0.958 32 H 0.061 0.939 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.063 0.937 36 H 0.038 0.962 37 H 0.272 0.728 38 H 0.155 0.845 39 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.877 0.963 -4.995 5.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.086 4.086 3 C -0.193 4.193 4 C -0.189 4.189 5 C 0.009 3.991 6 N -0.323 5.323 7 C 0.100 3.900 8 C -0.581 4.581 9 H 0.087 0.913 10 C -0.131 4.131 11 N -0.512 5.512 12 Si 0.716 3.284 13 H -0.197 1.197 14 H -0.207 1.207 15 H -0.195 1.195 16 C 0.377 3.623 17 O -0.425 6.425 18 C -0.412 4.412 19 S 0.716 5.284 20 C -0.472 4.472 21 C -0.190 4.190 22 C -0.047 4.047 23 Cl -0.021 7.021 24 H 0.073 0.927 25 H 0.064 0.936 26 H 0.085 0.915 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.061 0.939 32 H 0.080 0.920 33 H 0.094 0.906 34 H 0.096 0.904 35 H 0.081 0.919 36 H 0.054 0.946 37 H 0.082 0.918 38 H 0.173 0.827 39 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 1.125 1.610 -4.413 4.830 hybrid contribution 1.170 -1.262 0.142 1.726 sum 2.295 0.348 -4.271 4.861 Atomic orbital electron populations 1.22015 0.94449 1.02740 1.00887 1.20958 0.96099 0.95111 0.96426 1.21781 1.00843 0.95323 1.01372 1.21800 1.01683 0.99750 0.95712 1.21382 1.00520 0.80577 0.96582 1.47919 1.17964 1.06508 1.59917 1.19801 0.79671 0.96518 0.94054 1.21558 0.95335 1.42444 0.98756 0.91255 1.24917 0.94821 0.94932 0.98393 1.69894 0.98865 1.44524 1.37884 0.86638 0.77793 0.79949 0.84014 1.19706 1.20739 1.19496 1.16752 0.84413 0.83363 0.77732 1.90751 1.20519 1.80467 1.50744 1.24719 1.04988 0.98710 1.12825 1.86190 1.12018 0.90269 1.39937 1.26591 1.02750 1.11063 1.06751 1.19351 0.97027 0.96648 1.05962 1.20046 0.90324 0.93407 1.00943 1.98321 1.29475 1.96636 1.77631 0.92662 0.93560 0.91464 0.92756 0.92900 0.92748 0.93026 0.93867 0.91958 0.90606 0.90419 0.91896 0.94566 0.91847 0.82726 0.85398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.18 7.36 37.16 0.27 -1.91 16 2 C -0.08 -1.29 0.85 -154.51 -0.13 -1.43 16 3 C -0.14 -1.71 8.47 37.16 0.31 -1.40 16 4 C -0.13 -2.14 7.23 37.16 0.27 -1.87 16 5 C 0.13 2.34 4.59 -4.04 -0.02 2.32 16 6 N -0.59 -11.94 1.98 -176.69 -0.35 -12.29 16 7 C 0.22 4.74 3.57 -5.19 -0.02 4.73 16 8 C -0.54 -12.48 6.95 -34.44 -0.24 -12.72 16 9 H 0.07 1.69 7.81 -52.49 -0.41 1.28 16 10 C 0.08 1.76 5.02 -17.82 -0.09 1.67 16 11 N -0.88 -20.85 13.29 55.43 0.74 -20.11 16 12 Si 0.89 18.73 29.54 -169.99 -5.02 13.71 16 13 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 14 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 15 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 16 C 0.59 12.64 6.03 -12.96 -0.08 12.56 16 17 O -0.54 -12.27 13.34 5.18 0.07 -12.21 16 18 C -0.29 -6.02 6.23 -36.80 -0.23 -6.25 16 19 S 0.44 8.63 15.87 -107.50 -1.71 6.92 16 20 C -0.33 -5.71 10.92 29.17 0.32 -5.39 16 21 C -0.16 -2.77 10.06 -41.38 -0.42 -3.18 16 22 C 0.00 -0.07 6.39 -40.34 -0.26 -0.33 16 23 Cl -0.05 -0.91 27.29 -51.86 -1.42 -2.33 16 24 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 25 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.07 1.15 5.73 -51.93 -0.30 0.85 16 27 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.05 0.64 8.14 -51.92 -0.42 0.22 16 30 H 0.05 0.94 6.85 -51.93 -0.36 0.58 16 31 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.06 1.09 7.41 -51.92 -0.38 0.70 16 33 H 0.08 1.30 8.10 -51.93 -0.42 0.88 16 34 H 0.08 1.41 7.28 -51.93 -0.38 1.03 16 35 H 0.06 1.38 5.90 -51.93 -0.31 1.07 16 36 H 0.04 0.82 4.50 -22.34 -0.10 0.72 16 37 H 0.27 6.23 8.31 -40.82 -0.34 5.89 16 38 H 0.15 2.23 8.06 -52.49 -0.42 1.80 16 39 H 0.13 1.92 8.06 -52.49 -0.42 1.50 16 LS Contribution 333.16 15.07 5.02 5.02 Total: -1.00 -24.77 333.16 -8.14 -32.91 By element: Atomic # 1 Polarization: 6.76 SS G_CDS: -5.17 Total: 1.59 kcal Atomic # 6 Polarization: -12.90 SS G_CDS: -0.30 Total: -13.20 kcal Atomic # 7 Polarization: -32.79 SS G_CDS: 0.39 Total: -32.41 kcal Atomic # 8 Polarization: -12.27 SS G_CDS: 0.07 Total: -12.21 kcal Atomic # 14 Polarization: 18.73 SS G_CDS: -5.02 Total: 13.71 kcal Atomic # 16 Polarization: 8.63 SS G_CDS: -1.71 Total: 6.92 kcal Atomic # 17 Polarization: -0.91 SS G_CDS: -1.42 Total: -2.33 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -24.77 -8.14 -32.91 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000285402357.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.431 kcal (2) G-P(sol) polarization free energy of solvation -24.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds