Wall clock time and date at job start Tue Mar 31 2020 10:39:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47312 * 2 1 4 4 C 1.53002 * 109.47205 * 240.00292 * 2 1 3 5 5 C 1.53001 * 109.47441 * 120.00131 * 2 1 3 6 6 N 1.46506 * 109.46941 * 64.95307 * 5 2 1 7 7 C 1.46498 * 119.99890 * 273.91887 * 6 5 2 8 8 C 1.50704 * 109.46702 * 262.30284 * 7 6 5 9 9 H 1.07994 * 120.00272 * 0.02562 * 8 7 6 10 10 C 1.37880 * 119.99752 * 180.02562 * 8 7 6 11 11 N 1.31513 * 119.99981 * 359.97438 * 10 8 7 12 12 Si 1.86803 * 119.99900 * 180.02562 * 10 8 7 13 13 H 1.48499 * 109.47130 * 59.99627 * 12 10 8 14 14 H 1.48500 * 109.47300 * 179.97438 * 12 10 8 15 15 H 1.48499 * 109.46952 * 299.99802 * 12 10 8 16 16 C 1.34778 * 119.99804 * 93.91084 * 6 5 2 17 17 O 1.21714 * 119.99832 * 2.27107 * 16 6 5 18 18 C 1.46439 * 119.99649 * 182.26036 * 16 6 5 19 19 S 1.75824 * 125.46461 * 351.50380 * 18 16 6 20 20 C 1.70614 * 91.58612 * 179.97438 * 19 18 16 21 21 C 1.33776 * 110.99801 * 0.02562 * 20 19 18 22 22 C 1.36793 * 125.45760 * 171.50069 * 18 16 6 23 23 Cl 1.73600 * 123.38132 * 0.02562 * 22 18 16 24 24 H 1.08996 * 109.47193 * 299.99546 * 1 2 3 25 25 H 1.09002 * 109.46981 * 60.00235 * 1 2 3 26 26 H 1.09004 * 109.46976 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47650 * 179.97438 * 3 2 1 28 28 H 1.08995 * 109.47525 * 300.00396 * 3 2 1 29 29 H 1.09008 * 109.46946 * 59.99855 * 3 2 1 30 30 H 1.08996 * 109.47327 * 305.05199 * 4 2 1 31 31 H 1.09003 * 109.46996 * 65.05265 * 4 2 1 32 32 H 1.09007 * 109.46960 * 185.05038 * 4 2 1 33 33 H 1.08999 * 109.46777 * 304.95890 * 5 2 1 34 34 H 1.08995 * 109.47571 * 184.95098 * 5 2 1 35 35 H 1.08993 * 109.47402 * 22.30174 * 7 6 5 36 36 H 1.09002 * 109.47348 * 142.30638 * 7 6 5 37 37 H 0.97002 * 119.99556 * 180.02562 * 11 10 8 38 38 H 1.07995 * 124.50164 * 179.73127 * 20 19 18 39 39 H 1.07996 * 122.45270 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0400 -0.7213 1.2492 6 7 1.6515 -2.1327 1.1910 7 6 0.3373 -2.5516 1.6846 8 6 0.4733 -3.0787 3.0899 9 1 1.4417 -3.0992 3.5676 10 6 -0.6386 -3.5348 3.7657 11 7 -1.8179 -3.5094 3.1841 12 14 -0.4702 -4.1875 5.5078 13 1 0.0707 -3.1195 6.3865 14 1 -1.8022 -4.6123 6.0083 15 1 0.4549 -5.3492 5.5139 16 6 2.5031 -3.0456 0.6832 17 8 3.6105 -2.7041 0.3111 18 6 2.0959 -4.4484 0.5793 19 16 0.6282 -5.1377 1.2591 20 6 1.0204 -6.6857 0.6585 21 6 2.1818 -6.6624 -0.0050 22 6 2.7966 -5.4327 -0.0622 23 17 4.3098 -5.1580 -0.8675 24 1 -0.3633 0.5137 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1300 1.4426 0.0005 28 1 1.6767 1.9564 -0.8899 29 1 1.6766 1.9564 0.8900 30 1 1.6047 -1.7194 -1.2958 31 1 1.7524 -0.1577 -2.1369 32 1 3.1263 -0.8002 -1.2052 33 1 1.6060 -0.2613 2.1369 34 1 3.1264 -0.6451 1.2947 35 1 -0.3411 -1.6986 1.6806 36 1 -0.0603 -3.3351 1.0396 37 1 -2.6001 -3.8300 3.6597 38 1 0.4142 -7.5682 0.7996 39 1 2.6059 -7.5441 -0.4622 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000285402357.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:39:03 Heat of formation + Delta-G solvation = -26.854560 kcal Electronic energy + Delta-G solvation = -23180.477241 eV Core-core repulsion = 19854.191425 eV Total energy + Delta-G solvation = -3326.285816 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 315.080 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.07867 -38.94821 -37.80201 -36.83828 -36.17704 -34.28704 -30.87028 -29.56948 -28.15192 -28.07904 -27.33558 -25.43221 -24.62688 -21.85075 -20.03295 -19.69756 -18.91560 -18.53018 -17.28460 -16.80005 -16.51832 -16.32180 -15.91515 -15.22165 -15.01513 -14.59586 -14.41673 -14.27715 -14.13190 -14.07453 -13.80675 -13.46455 -13.31520 -12.99937 -12.81406 -12.72006 -12.49496 -12.46280 -12.28754 -12.10622 -11.96859 -11.82212 -11.70644 -11.52594 -11.46041 -10.86231 -10.72238 -10.52937 -9.73585 -9.39880 -9.08876 -8.20726 -6.28644 -0.34966 0.55601 1.27887 1.41764 1.44388 1.48153 1.52855 1.71271 2.26802 2.32431 2.46567 3.10389 3.75146 3.92192 3.99244 4.08362 4.27113 4.36209 4.58696 4.63179 4.75086 4.80447 4.85348 4.90935 4.95023 4.96036 5.08020 5.08947 5.14812 5.16969 5.24392 5.27894 5.34273 5.49698 5.54780 5.66187 5.86657 5.97734 6.51536 6.77597 7.29170 7.39882 8.81734 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.009678 B = 0.008399 C = 0.005113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2892.361278 B = 3332.740723 C = 5475.437956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.080 4.080 3 C -0.129 4.129 4 C -0.123 4.123 5 C 0.128 3.872 6 N -0.591 5.591 7 C 0.233 3.767 8 C -0.545 4.545 9 H 0.051 0.949 10 C 0.053 3.947 11 N -0.893 5.893 12 Si 0.929 3.071 13 H -0.276 1.276 14 H -0.276 1.276 15 H -0.271 1.271 16 C 0.583 3.417 17 O -0.564 6.564 18 C -0.317 4.317 19 S 0.405 5.595 20 C -0.310 4.310 21 C -0.160 4.160 22 C -0.007 4.007 23 Cl -0.044 7.044 24 H 0.057 0.943 25 H 0.066 0.934 26 H 0.042 0.958 27 H 0.054 0.946 28 H 0.070 0.930 29 H 0.064 0.936 30 H 0.025 0.975 31 H 0.064 0.936 32 H 0.045 0.955 33 H 0.077 0.923 34 H 0.069 0.931 35 H 0.056 0.944 36 H 0.036 0.964 37 H 0.273 0.727 38 H 0.188 0.812 39 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.636 0.562 -5.393 5.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.081 4.081 3 C -0.187 4.187 4 C -0.181 4.181 5 C 0.006 3.994 6 N -0.321 5.321 7 C 0.110 3.890 8 C -0.587 4.587 9 H 0.069 0.931 10 C -0.152 4.152 11 N -0.530 5.530 12 Si 0.755 3.245 13 H -0.202 1.202 14 H -0.201 1.201 15 H -0.196 1.196 16 C 0.372 3.628 17 O -0.447 6.447 18 C -0.439 4.439 19 S 0.680 5.320 20 C -0.448 4.448 21 C -0.190 4.190 22 C -0.052 4.052 23 Cl -0.016 7.016 24 H 0.076 0.924 25 H 0.085 0.915 26 H 0.061 0.939 27 H 0.073 0.927 28 H 0.089 0.911 29 H 0.083 0.917 30 H 0.044 0.956 31 H 0.083 0.917 32 H 0.065 0.935 33 H 0.095 0.905 34 H 0.087 0.913 35 H 0.074 0.926 36 H 0.053 0.947 37 H 0.083 0.917 38 H 0.206 0.794 39 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 0.878 1.233 -4.801 5.034 hybrid contribution 1.299 -1.215 0.195 1.790 sum 2.177 0.018 -4.606 5.095 Atomic orbital electron populations 1.21944 0.94152 1.01470 1.01984 1.20928 0.96209 0.96430 0.94550 1.21732 1.00911 0.93280 1.02763 1.21704 1.00365 0.98805 0.97191 1.21554 1.00069 0.79701 0.98120 1.47950 1.17403 1.07393 1.59343 1.19603 0.79950 0.96091 0.93308 1.21509 0.94552 1.43037 0.99557 0.93107 1.25274 0.94590 0.94996 1.00338 1.69938 0.99156 1.45203 1.38690 0.86034 0.77815 0.79272 0.81422 1.20169 1.20078 1.19592 1.16950 0.84314 0.83945 0.77613 1.90720 1.21169 1.80927 1.51863 1.24797 1.05934 0.98793 1.14386 1.86194 1.12235 0.92284 1.41304 1.26804 1.02509 1.10537 1.04925 1.19639 0.96863 0.96746 1.05720 1.20419 0.90440 0.94033 1.00286 1.98319 1.29129 1.96716 1.77400 0.92426 0.91543 0.93891 0.92663 0.91143 0.91733 0.95593 0.91669 0.93537 0.90478 0.91292 0.92609 0.94750 0.91695 0.79423 0.82410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.08 7.36 71.98 0.53 -3.55 16 2 C -0.08 -2.39 0.85 -52.18 -0.04 -2.44 16 3 C -0.13 -3.02 8.47 71.98 0.61 -2.41 16 4 C -0.12 -3.96 7.23 71.98 0.52 -3.44 16 5 C 0.13 4.57 4.59 86.38 0.40 4.97 16 6 N -0.59 -24.38 1.98 -831.14 -1.65 -26.03 16 7 C 0.23 10.17 3.57 85.63 0.31 10.47 16 8 C -0.55 -25.60 6.95 25.60 0.18 -25.43 16 9 H 0.05 2.54 7.81 -2.91 -0.02 2.51 16 10 C 0.05 2.44 5.02 84.66 0.43 2.86 16 11 N -0.89 -42.40 13.29 21.45 0.28 -42.12 16 12 Si 0.93 37.99 29.54 68.60 2.03 40.02 16 13 H -0.28 -11.42 7.11 99.48 0.71 -10.72 16 14 H -0.28 -10.94 7.11 99.48 0.71 -10.23 16 15 H -0.27 -11.04 7.11 99.48 0.71 -10.34 16 16 C 0.58 25.51 6.03 86.38 0.52 26.03 16 17 O -0.56 -25.97 13.34 -4.39 -0.06 -26.03 16 18 C -0.32 -13.22 6.23 24.07 0.15 -13.07 16 19 S 0.41 15.73 15.87 -56.49 -0.90 14.84 16 20 C -0.31 -9.84 10.92 66.81 0.73 -9.11 16 21 C -0.16 -5.17 10.06 21.10 0.21 -4.96 16 22 C -0.01 -0.27 6.39 21.78 0.14 -0.14 16 23 Cl -0.04 -1.61 27.29 -2.72 -0.07 -1.69 16 24 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 25 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 26 H 0.04 1.47 5.73 -2.38 -0.01 1.46 16 27 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 28 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.06 1.39 8.14 -2.38 -0.02 1.37 16 30 H 0.02 0.94 6.85 -2.39 -0.02 0.92 16 31 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 32 H 0.05 1.62 7.41 -2.38 -0.02 1.60 16 33 H 0.08 2.69 8.10 -2.39 -0.02 2.67 16 34 H 0.07 2.56 7.28 -2.39 -0.02 2.54 16 35 H 0.06 2.50 5.90 -2.39 -0.01 2.48 16 36 H 0.04 1.58 4.50 -21.20 -0.10 1.49 16 37 H 0.27 12.43 8.31 -92.71 -0.77 11.66 16 38 H 0.19 4.68 8.06 -2.91 -0.02 4.65 16 39 H 0.16 4.17 8.06 -2.91 -0.02 4.14 16 Total: -1.00 -52.58 333.16 5.28 -47.30 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: 0.97 Total: 13.91 kcal Atomic # 6 Polarization: -24.87 SS G_CDS: 4.67 Total: -20.20 kcal Atomic # 7 Polarization: -66.78 SS G_CDS: -1.36 Total: -68.15 kcal Atomic # 8 Polarization: -25.97 SS G_CDS: -0.06 Total: -26.03 kcal Atomic # 14 Polarization: 37.99 SS G_CDS: 2.03 Total: 40.02 kcal Atomic # 16 Polarization: 15.73 SS G_CDS: -0.90 Total: 14.84 kcal Atomic # 17 Polarization: -1.61 SS G_CDS: -0.07 Total: -1.69 kcal Total: -52.58 5.28 -47.30 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000285402357.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.443 kcal (2) G-P(sol) polarization free energy of solvation -52.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds