Wall clock time and date at job start Tue Mar 31 2020 11:29:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 N 1.46298 * 114.00126 * 2 1 4 4 C 1.46894 * 110.99966 * 243.94934 * 3 2 1 5 5 C 1.53001 * 109.46986 * 66.04881 * 4 3 2 6 6 C 1.53004 * 109.47096 * 179.97438 * 5 4 3 7 7 S 1.80998 * 109.47024 * 180.02562 * 6 5 4 8 8 C 1.76202 * 100.00037 * 179.97438 * 7 6 5 9 9 H 1.08006 * 119.99787 * 0.02562 * 8 7 6 10 10 C 1.38790 * 120.00201 * 179.97438 * 8 7 6 11 11 N 1.31628 * 120.00397 * 180.02562 * 10 8 7 12 12 Si 1.86796 * 120.00110 * 0.02562 * 10 8 7 13 13 H 1.48497 * 109.47101 * 89.99949 * 12 10 8 14 14 H 1.48497 * 109.47420 * 210.00232 * 12 10 8 15 15 H 1.48505 * 109.47125 * 330.00376 * 12 10 8 16 16 C 1.46909 * 110.99763 * 119.99922 * 3 2 1 17 17 C 1.50699 * 109.46961 * 298.95068 * 16 3 2 18 18 C 1.38237 * 120.00455 * 104.99910 * 17 16 3 19 19 C 1.38224 * 120.01313 * 179.74163 * 18 17 16 20 20 C 1.38264 * 120.02445 * 0.26351 * 19 18 17 21 21 C 1.38190 * 120.01695 * 0.02562 * 20 19 18 22 22 C 1.38328 * 120.01174 * 285.27645 * 17 16 3 23 23 Cl 1.73603 * 120.01189 * 0.02562 * 22 17 16 24 24 H 1.09002 * 109.47532 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47208 * 300.00520 * 1 2 3 26 26 H 1.09002 * 109.46669 * 59.99700 * 1 2 3 27 27 H 1.09004 * 109.47248 * 186.04834 * 4 3 2 28 28 H 1.09003 * 109.47368 * 306.04478 * 4 3 2 29 29 H 1.08991 * 109.47097 * 299.99744 * 5 4 3 30 30 H 1.09002 * 109.46932 * 59.99867 * 5 4 3 31 31 H 1.09002 * 109.46632 * 299.99867 * 6 5 4 32 32 H 1.08993 * 109.47105 * 59.99593 * 6 5 4 33 33 H 0.97003 * 120.00800 * 179.97438 * 11 10 8 34 34 H 1.08993 * 109.47031 * 178.95561 * 16 3 2 35 35 H 1.08991 * 109.47270 * 58.95053 * 16 3 2 36 36 H 1.08002 * 119.99593 * 0.02780 * 18 17 16 37 37 H 1.07996 * 119.98813 * 180.23496 * 19 18 17 38 38 H 1.08004 * 119.98845 * 179.97438 * 20 19 18 39 39 H 1.08000 * 120.00844 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 7 2.0241 1.3365 0.0000 4 6 2.7884 1.5724 -1.2321 5 6 1.8336 1.5991 -2.4273 6 6 2.6296 1.8455 -3.7105 7 16 1.4999 1.8779 -5.1243 8 6 2.6493 2.1695 -6.4277 9 1 3.7019 2.2688 -6.2072 10 6 2.2020 2.2706 -7.7377 11 7 3.0607 2.4879 -8.7114 12 14 0.3816 2.0982 -8.1190 13 1 -0.2657 3.4333 -8.0573 14 1 0.2126 1.5287 -9.4800 15 1 -0.2496 1.1956 -7.1229 16 6 2.8646 1.5385 1.1878 17 6 2.0198 1.4088 2.4290 18 6 2.1059 0.2700 3.2079 19 6 1.3350 0.1532 4.3493 20 6 0.4735 1.1728 4.7096 21 6 0.3821 2.3091 3.9285 22 6 1.1538 2.4267 2.7859 23 17 1.0394 3.8537 1.8039 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 3.3075 2.5282 -1.1602 28 1 3.5167 0.7727 -1.3666 29 1 1.3146 0.6434 -2.4991 30 1 1.1053 2.3989 -2.2927 31 1 3.1483 2.8015 -3.6383 32 1 3.3581 1.0461 -3.8452 33 1 2.7482 2.5582 -9.6270 34 1 3.3093 2.5329 1.1533 35 1 3.6545 0.7876 1.2059 36 1 2.7790 -0.5266 2.9272 37 1 1.4054 -0.7350 4.9596 38 1 -0.1289 1.0807 5.6013 39 1 -0.2907 3.1056 4.2102 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000289843540.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:29:04 Heat of formation + Delta-G solvation = 8.794824 kcal Electronic energy + Delta-G solvation = -21140.697674 eV Core-core repulsion = 17815.957731 eV Total energy + Delta-G solvation = -3324.739942 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 315.080 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.77580 -37.53492 -36.53659 -34.59709 -33.43283 -32.41914 -31.07998 -30.67165 -26.63980 -26.28940 -25.60445 -23.43402 -22.98766 -21.44724 -21.06899 -17.50791 -17.40274 -16.85557 -16.07607 -15.87034 -15.52551 -15.03515 -14.95474 -14.60684 -14.13154 -14.10403 -13.75096 -13.54899 -13.43274 -12.99929 -12.84567 -12.38986 -12.24265 -11.88919 -11.72700 -11.66856 -11.59175 -11.35535 -11.03773 -10.99660 -10.85487 -10.45919 -10.19412 -9.92673 -9.76435 -9.24812 -8.98657 -8.94338 -8.73092 -8.53562 -6.91526 -6.26559 -3.98399 0.84354 0.94000 2.01223 2.57539 3.04101 3.31786 3.33675 3.47379 3.60388 4.25406 4.33608 4.45250 4.62252 4.76260 4.88583 4.95850 5.03274 5.12212 5.13508 5.23114 5.29289 5.41182 5.49517 5.56957 5.58547 5.61087 5.67746 5.75269 5.86067 5.89721 5.92410 6.05217 6.11829 6.26633 6.45972 6.51354 6.56919 6.75104 6.99681 7.97239 8.46070 9.19505 10.82966 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.027218 B = 0.002649 C = 0.002612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.475614 B =10566.311266 C =10716.104533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.258 6.258 3 N -0.353 5.353 4 C 0.047 3.953 5 C -0.093 4.093 6 C -0.082 4.082 7 S -0.214 6.214 8 C -0.501 4.501 9 H 0.088 0.912 10 C 0.091 3.909 11 N -0.883 5.883 12 Si 0.862 3.138 13 H -0.269 1.269 14 H -0.276 1.276 15 H -0.238 1.238 16 C 0.078 3.922 17 C -0.068 4.068 18 C -0.091 4.091 19 C -0.120 4.120 20 C -0.109 4.109 21 C -0.117 4.117 22 C -0.016 4.016 23 Cl -0.056 7.056 24 H 0.083 0.917 25 H 0.038 0.962 26 H 0.048 0.952 27 H 0.091 0.909 28 H 0.049 0.951 29 H 0.070 0.930 30 H 0.072 0.928 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.270 0.730 34 H 0.104 0.896 35 H 0.058 0.942 36 H 0.129 0.871 37 H 0.127 0.873 38 H 0.129 0.871 39 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.080 -2.900 29.077 29.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 O -0.263 6.263 3 N -0.122 5.122 4 C -0.082 4.082 5 C -0.131 4.131 6 C -0.231 4.231 7 S 0.014 5.986 8 C -0.649 4.649 9 H 0.106 0.894 10 C -0.117 4.117 11 N -0.520 5.520 12 Si 0.687 3.313 13 H -0.194 1.194 14 H -0.201 1.201 15 H -0.161 1.161 16 C -0.050 4.050 17 C -0.069 4.069 18 C -0.110 4.110 19 C -0.138 4.138 20 C -0.127 4.127 21 C -0.136 4.136 22 C -0.043 4.043 23 Cl -0.027 7.027 24 H 0.101 0.899 25 H 0.057 0.943 26 H 0.067 0.933 27 H 0.109 0.891 28 H 0.068 0.932 29 H 0.089 0.911 30 H 0.091 0.909 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.080 0.920 34 H 0.122 0.878 35 H 0.076 0.924 36 H 0.147 0.853 37 H 0.145 0.855 38 H 0.147 0.853 39 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -5.453 -2.733 28.729 29.370 hybrid contribution 1.150 -0.172 -0.537 1.281 sum -4.304 -2.905 28.192 28.666 Atomic orbital electron populations 1.22583 0.80881 1.01249 1.00600 1.90653 1.20635 1.18166 1.96843 1.67717 1.33725 1.08823 1.01894 1.22511 0.95665 1.01266 0.88761 1.21239 0.97714 1.03182 0.91008 1.23006 1.00658 1.03415 0.95975 1.84161 1.17273 1.95196 1.01983 1.22131 0.94942 1.56229 0.91588 0.89438 1.24793 0.98392 0.93419 0.95094 1.69937 1.34523 1.47310 1.00199 0.86668 0.85182 0.80212 0.79282 1.19373 1.20145 1.16149 1.21347 0.93456 1.02712 0.87452 1.19540 0.97420 0.93419 0.96511 1.21052 0.99253 0.96377 0.94272 1.21210 0.96509 0.99121 0.97006 1.21111 0.98749 0.93253 0.99622 1.21067 0.99552 0.99079 0.93897 1.20841 0.99231 0.90214 0.94028 1.98396 1.97148 1.37260 1.69898 0.89897 0.94287 0.93296 0.89122 0.93228 0.91131 0.90890 0.91444 0.91510 0.92003 0.87784 0.92382 0.85335 0.85538 0.85316 0.85046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.52 11.49 101.05 1.16 1.68 16 2 O -0.26 -3.45 9.99 -13.92 -0.14 -3.59 16 3 N -0.35 -4.39 4.61 -115.06 -0.53 -4.92 16 4 C 0.05 0.62 5.27 -3.83 -0.02 0.60 16 5 C -0.09 -1.48 5.31 -26.73 -0.14 -1.63 16 6 C -0.08 -1.60 5.67 37.16 0.21 -1.39 16 7 S -0.21 -5.30 19.41 -107.50 -2.09 -7.39 16 8 C -0.50 -14.71 10.04 30.94 0.31 -14.40 16 9 H 0.09 2.72 8.03 -52.48 -0.42 2.30 16 10 C 0.09 2.69 5.50 -17.43 -0.10 2.60 16 11 N -0.88 -27.04 13.97 55.49 0.78 -26.26 16 12 Si 0.86 21.81 27.74 -169.99 -4.71 17.10 16 13 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 14 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 15 H -0.24 -5.90 6.74 56.52 0.38 -5.52 16 16 C 0.08 0.81 4.75 -4.97 -0.02 0.78 16 17 C -0.07 -0.67 4.99 -104.59 -0.52 -1.19 16 18 C -0.09 -0.78 9.67 -39.59 -0.38 -1.17 16 19 C -0.12 -0.87 10.05 -39.58 -0.40 -1.27 16 20 C -0.11 -0.77 10.05 -39.59 -0.40 -1.17 16 21 C -0.12 -0.98 9.83 -39.55 -0.39 -1.37 16 22 C -0.02 -0.16 6.31 -39.50 -0.25 -0.41 16 23 Cl -0.06 -0.60 27.55 -51.86 -1.43 -2.03 16 24 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 25 H 0.04 0.45 8.14 -51.93 -0.42 0.02 16 26 H 0.05 0.61 7.84 -51.93 -0.41 0.21 16 27 H 0.09 1.08 8.00 -51.93 -0.42 0.67 16 28 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 29 H 0.07 1.19 7.53 -51.93 -0.39 0.80 16 30 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 31 H 0.07 1.31 8.14 -51.91 -0.42 0.88 16 32 H 0.07 1.32 8.14 -51.92 -0.42 0.90 16 33 H 0.27 7.67 8.31 -40.82 -0.34 7.33 16 34 H 0.10 1.00 7.49 -51.93 -0.39 0.61 16 35 H 0.06 0.56 7.95 -51.93 -0.41 0.15 16 36 H 0.13 0.98 8.00 -52.49 -0.42 0.56 16 37 H 0.13 0.64 8.06 -52.49 -0.42 0.22 16 38 H 0.13 0.60 8.06 -52.48 -0.42 0.18 16 39 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 LS Contribution 359.34 15.07 5.42 5.42 Total: -1.00 -32.01 359.34 -9.46 -41.47 By element: Atomic # 1 Polarization: 4.34 SS G_CDS: -5.82 Total: -1.47 kcal Atomic # 6 Polarization: -17.38 SS G_CDS: -0.94 Total: -18.32 kcal Atomic # 7 Polarization: -31.43 SS G_CDS: 0.24 Total: -31.18 kcal Atomic # 8 Polarization: -3.45 SS G_CDS: -0.14 Total: -3.59 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.71 Total: 17.10 kcal Atomic # 16 Polarization: -5.30 SS G_CDS: -2.09 Total: -7.39 kcal Atomic # 17 Polarization: -0.60 SS G_CDS: -1.43 Total: -2.03 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -32.01 -9.46 -41.47 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000289843540.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.266 kcal (2) G-P(sol) polarization free energy of solvation -32.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.471 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds