Wall clock time and date at job start Tue Mar 31 2020 11:29:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 N 1.46303 * 113.99859 * 2 1 4 4 C 1.46906 * 110.99683 * 120.00111 * 3 2 1 5 5 C 1.52997 * 109.46907 * 298.95465 * 4 3 2 6 6 C 1.53006 * 109.47019 * 180.02562 * 5 4 3 7 7 S 1.80994 * 109.47345 * 179.97438 * 6 5 4 8 8 C 1.76197 * 100.00119 * 180.02562 * 7 6 5 9 9 H 1.07998 * 119.99941 * 359.97438 * 8 7 6 10 10 C 1.38803 * 120.00111 * 180.02562 * 8 7 6 11 11 N 1.31633 * 119.99808 * 359.97438 * 10 8 7 12 12 Si 1.86797 * 120.00027 * 179.97438 * 10 8 7 13 13 H 1.48496 * 109.47303 * 89.99800 * 12 10 8 14 14 H 1.48497 * 109.47071 * 209.99903 * 12 10 8 15 15 H 1.48501 * 109.47221 * 329.99872 * 12 10 8 16 16 C 1.46898 * 111.00215 * 243.95283 * 3 2 1 17 17 C 1.50702 * 109.46796 * 66.04870 * 16 3 2 18 18 C 1.38240 * 119.98570 * 269.72883 * 17 16 3 19 19 C 1.38220 * 120.01131 * 179.73002 * 18 17 16 20 20 C 1.38347 * 119.98525 * 0.54409 * 19 18 17 21 21 Cl 1.73602 * 120.01108 * 179.70932 * 20 19 18 22 22 C 1.38350 * 119.97733 * 359.72560 * 20 19 18 23 23 C 1.38215 * 119.98271 * 0.02562 * 22 20 19 24 24 H 1.08997 * 109.47203 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.46816 * 299.99519 * 1 2 3 26 26 H 1.08997 * 109.46794 * 59.99460 * 1 2 3 27 27 H 1.08995 * 109.46804 * 58.95607 * 4 3 2 28 28 H 1.09000 * 109.47043 * 178.95581 * 4 3 2 29 29 H 1.09004 * 109.47394 * 299.99454 * 5 4 3 30 30 H 1.08990 * 109.47621 * 60.00353 * 5 4 3 31 31 H 1.08998 * 109.47136 * 300.00104 * 6 5 4 32 32 H 1.09006 * 109.47001 * 59.99561 * 6 5 4 33 33 H 0.96999 * 119.99450 * 180.02562 * 11 10 8 34 34 H 1.08999 * 109.46988 * 186.04454 * 16 3 2 35 35 H 1.08996 * 109.46945 * 306.04941 * 16 3 2 36 36 H 1.08004 * 119.99384 * 359.97438 * 18 17 16 37 37 H 1.08005 * 120.00619 * 180.26670 * 19 18 17 38 38 H 1.08000 * 120.00921 * 179.97438 * 22 20 19 39 39 H 1.08008 * 119.99326 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 7 2.0241 1.3366 0.0000 4 6 2.8647 1.5385 1.1878 5 6 2.0070 1.4067 2.4479 6 6 2.8824 1.6177 3.6849 7 16 1.8677 1.4625 5.1757 8 6 3.0929 1.7434 6.4104 9 1 4.1156 1.9368 6.1221 10 6 2.7439 1.7151 7.7535 11 7 1.4975 1.4789 8.1048 12 14 4.0430 2.0122 9.0625 13 1 4.1154 3.4637 9.3676 14 1 3.6844 1.2647 10.2944 15 1 5.3621 1.5445 8.5660 16 6 2.7884 1.5726 -1.2321 17 6 1.8478 1.5989 -2.4093 18 6 1.5618 0.4310 -3.0914 19 6 0.6949 0.4536 -4.1677 20 6 0.1222 1.6472 -4.5693 21 17 -0.9609 1.6776 -5.9257 22 6 0.4131 2.8167 -3.8897 23 6 1.2762 2.7920 -2.8104 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 3.6546 0.7878 1.2057 28 1 3.3094 2.5331 1.1533 29 1 1.2171 2.1576 2.4299 30 1 1.5624 0.4122 2.4824 31 1 3.6726 0.8672 3.7031 32 1 3.3268 2.6124 3.6502 33 1 1.2536 1.4595 9.0434 34 1 3.3073 2.5285 -1.1602 35 1 3.5166 0.7729 -1.3667 36 1 2.0128 -0.4999 -2.7807 37 1 0.4681 -0.4596 -4.6978 38 1 -0.0333 3.7488 -4.2031 39 1 1.5038 3.7049 -2.2801 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291357585.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:29:06 Heat of formation + Delta-G solvation = 6.100339 kcal Electronic energy + Delta-G solvation = -20666.946073 eV Core-core repulsion = 17342.089289 eV Total energy + Delta-G solvation = -3324.856784 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 315.080 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.77711 -37.62372 -36.70829 -34.57008 -33.22395 -32.42134 -31.37151 -30.56410 -26.54941 -26.25620 -25.48742 -23.34303 -23.14274 -21.40440 -20.99744 -17.52874 -17.41048 -16.88697 -16.03335 -15.90581 -15.51942 -14.97640 -14.80135 -14.55883 -14.11619 -13.89145 -13.83838 -13.72547 -13.53929 -13.05554 -12.97508 -12.24127 -12.16164 -11.97273 -11.71658 -11.60509 -11.43559 -11.20022 -11.11489 -11.06698 -10.80344 -10.63217 -10.40682 -9.95380 -9.55144 -9.33900 -9.05408 -8.98418 -8.71539 -8.29343 -6.51872 -6.22290 -3.92312 0.78241 0.99714 1.81741 2.57080 3.21641 3.22508 3.29241 3.34554 3.57833 4.22634 4.33148 4.43963 4.57674 4.82803 4.96345 5.01143 5.13602 5.20045 5.25299 5.29815 5.40369 5.43163 5.50716 5.58218 5.63771 5.66089 5.70095 5.80442 5.89481 5.91363 5.91631 6.01069 6.25230 6.34730 6.46660 6.59221 6.59845 6.81364 6.98535 7.60913 8.37034 9.23931 10.85872 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.039789 B = 0.002016 C = 0.001994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 703.536589 B =13884.619346 C =14039.007162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 O -0.257 6.257 3 N -0.361 5.361 4 C 0.048 3.952 5 C -0.090 4.090 6 C -0.113 4.113 7 S -0.131 6.131 8 C -0.516 4.516 9 H 0.072 0.928 10 C 0.070 3.930 11 N -0.870 5.870 12 Si 0.918 3.082 13 H -0.277 1.277 14 H -0.282 1.282 15 H -0.272 1.272 16 C 0.076 3.924 17 C -0.069 4.069 18 C -0.088 4.088 19 C -0.114 4.114 20 C -0.035 4.035 21 Cl -0.077 7.077 22 C -0.113 4.113 23 C -0.088 4.088 24 H 0.084 0.916 25 H 0.049 0.951 26 H 0.040 0.960 27 H 0.046 0.954 28 H 0.091 0.909 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.059 0.941 32 H 0.060 0.940 33 H 0.267 0.733 34 H 0.101 0.899 35 H 0.059 0.941 36 H 0.131 0.869 37 H 0.131 0.869 38 H 0.132 0.868 39 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.908 0.391 -26.650 26.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.262 6.262 3 N -0.129 5.129 4 C -0.081 4.081 5 C -0.129 4.129 6 C -0.262 4.262 7 S 0.097 5.903 8 C -0.664 4.664 9 H 0.090 0.910 10 C -0.139 4.139 11 N -0.505 5.505 12 Si 0.745 3.255 13 H -0.203 1.203 14 H -0.208 1.208 15 H -0.197 1.197 16 C -0.052 4.052 17 C -0.070 4.070 18 C -0.106 4.106 19 C -0.133 4.133 20 C -0.062 4.062 21 Cl -0.048 7.048 22 C -0.132 4.132 23 C -0.107 4.107 24 H 0.102 0.898 25 H 0.068 0.932 26 H 0.058 0.942 27 H 0.065 0.935 28 H 0.109 0.891 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.119 0.881 35 H 0.077 0.923 36 H 0.149 0.851 37 H 0.149 0.851 38 H 0.150 0.850 39 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -2.515 0.286 -26.463 26.583 hybrid contribution 2.456 -0.004 0.593 2.527 sum -0.059 0.282 -25.869 25.871 Atomic orbital electron populations 1.22617 0.80777 1.01458 1.00666 1.90667 1.20734 1.17927 1.96825 1.67699 1.34020 1.09274 1.01881 1.22541 0.94899 1.01299 0.89386 1.21180 0.97840 1.03205 0.90650 1.23229 1.01629 1.02619 0.98706 1.84645 1.16363 1.93668 0.95591 1.22691 0.95755 1.55860 0.92125 0.90985 1.25022 0.96121 0.94741 0.97977 1.70026 1.16689 1.46259 1.17539 0.86163 0.80832 0.78414 0.80102 1.20278 1.20770 1.19718 1.21375 0.93586 1.02444 0.87757 1.19775 0.98057 0.93297 0.95879 1.21056 0.97055 0.98309 0.94224 1.21032 0.97631 0.96774 0.97830 1.20952 0.97077 0.95599 0.92534 1.98371 1.63379 1.98894 1.44134 1.21042 0.98999 0.97175 0.95992 1.21037 0.95803 0.98232 0.95609 0.89755 0.93206 0.94179 0.93520 0.89104 0.91040 0.91082 0.92265 0.92162 0.92321 0.88112 0.92264 0.85113 0.85074 0.84966 0.84863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.49 11.51 101.05 1.16 1.65 16 2 O -0.26 -3.39 9.65 -13.92 -0.13 -3.53 16 3 N -0.36 -4.34 4.73 -115.06 -0.54 -4.88 16 4 C 0.05 0.62 5.29 -3.82 -0.02 0.60 16 5 C -0.09 -1.48 5.28 -26.73 -0.14 -1.62 16 6 C -0.11 -2.25 5.67 37.16 0.21 -2.04 16 7 S -0.13 -3.44 21.44 -107.50 -2.30 -5.74 16 8 C -0.52 -14.81 9.50 30.94 0.29 -14.52 16 9 H 0.07 2.00 7.80 -52.49 -0.41 1.59 16 10 C 0.07 2.00 5.49 -17.43 -0.10 1.91 16 11 N -0.87 -26.04 13.22 55.49 0.73 -25.31 16 12 Si 0.92 21.54 29.55 -169.99 -5.02 16.51 16 13 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 14 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 15 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 16 C 0.08 0.71 5.41 -4.98 -0.03 0.69 16 17 C -0.07 -0.63 5.17 -104.62 -0.54 -1.18 16 18 C -0.09 -0.78 9.39 -39.59 -0.37 -1.15 16 19 C -0.11 -0.97 9.83 -39.55 -0.39 -1.36 16 20 C -0.03 -0.31 6.32 -39.50 -0.25 -0.56 16 21 Cl -0.08 -0.65 28.96 -51.86 -1.50 -2.15 16 22 C -0.11 -0.95 9.83 -39.55 -0.39 -1.33 16 23 C -0.09 -0.74 9.70 -39.59 -0.38 -1.13 16 24 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 25 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.04 0.45 8.11 -51.93 -0.42 0.02 16 27 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.09 1.03 8.03 -51.93 -0.42 0.61 16 29 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 30 H 0.07 1.25 7.67 -51.93 -0.40 0.85 16 31 H 0.06 1.18 8.14 -51.92 -0.42 0.76 16 32 H 0.06 1.17 8.14 -51.91 -0.42 0.75 16 33 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 34 H 0.10 0.77 7.94 -51.93 -0.41 0.35 16 35 H 0.06 0.55 8.08 -51.93 -0.42 0.13 16 36 H 0.13 1.09 8.06 -52.48 -0.42 0.67 16 37 H 0.13 0.92 8.06 -52.48 -0.42 0.50 16 38 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 39 H 0.13 0.94 8.06 -52.48 -0.42 0.52 16 LS Contribution 364.31 15.07 5.49 5.49 Total: -1.00 -31.54 364.31 -10.07 -41.60 By element: Atomic # 1 Polarization: 3.87 SS G_CDS: -5.84 Total: -1.97 kcal Atomic # 6 Polarization: -19.09 SS G_CDS: -0.94 Total: -20.03 kcal Atomic # 7 Polarization: -30.38 SS G_CDS: 0.19 Total: -30.19 kcal Atomic # 8 Polarization: -3.39 SS G_CDS: -0.13 Total: -3.53 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.51 kcal Atomic # 16 Polarization: -3.44 SS G_CDS: -2.30 Total: -5.74 kcal Atomic # 17 Polarization: -0.65 SS G_CDS: -1.50 Total: -2.15 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -31.54 -10.07 -41.60 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291357585.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.705 kcal (2) G-P(sol) polarization free energy of solvation -31.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.604 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds