Wall clock time and date at job start Tue Mar 31 2020 11:29:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 N 1.46303 * 113.99859 * 2 1 4 4 C 1.46906 * 110.99683 * 120.00111 * 3 2 1 5 5 C 1.52997 * 109.46907 * 298.95465 * 4 3 2 6 6 C 1.53006 * 109.47019 * 180.02562 * 5 4 3 7 7 S 1.80994 * 109.47345 * 179.97438 * 6 5 4 8 8 C 1.76197 * 100.00119 * 180.02562 * 7 6 5 9 9 H 1.07998 * 119.99941 * 359.97438 * 8 7 6 10 10 C 1.38803 * 120.00111 * 180.02562 * 8 7 6 11 11 N 1.31633 * 119.99808 * 359.97438 * 10 8 7 12 12 Si 1.86797 * 120.00027 * 179.97438 * 10 8 7 13 13 H 1.48496 * 109.47303 * 89.99800 * 12 10 8 14 14 H 1.48497 * 109.47071 * 209.99903 * 12 10 8 15 15 H 1.48501 * 109.47221 * 329.99872 * 12 10 8 16 16 C 1.46898 * 111.00215 * 243.95283 * 3 2 1 17 17 C 1.50702 * 109.46796 * 66.04870 * 16 3 2 18 18 C 1.38240 * 119.98570 * 269.72883 * 17 16 3 19 19 C 1.38220 * 120.01131 * 179.73002 * 18 17 16 20 20 C 1.38347 * 119.98525 * 0.54409 * 19 18 17 21 21 Cl 1.73602 * 120.01108 * 179.70932 * 20 19 18 22 22 C 1.38350 * 119.97733 * 359.72560 * 20 19 18 23 23 C 1.38215 * 119.98271 * 0.02562 * 22 20 19 24 24 H 1.08997 * 109.47203 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.46816 * 299.99519 * 1 2 3 26 26 H 1.08997 * 109.46794 * 59.99460 * 1 2 3 27 27 H 1.08995 * 109.46804 * 58.95607 * 4 3 2 28 28 H 1.09000 * 109.47043 * 178.95581 * 4 3 2 29 29 H 1.09004 * 109.47394 * 299.99454 * 5 4 3 30 30 H 1.08990 * 109.47621 * 60.00353 * 5 4 3 31 31 H 1.08998 * 109.47136 * 300.00104 * 6 5 4 32 32 H 1.09006 * 109.47001 * 59.99561 * 6 5 4 33 33 H 0.96999 * 119.99450 * 180.02562 * 11 10 8 34 34 H 1.08999 * 109.46988 * 186.04454 * 16 3 2 35 35 H 1.08996 * 109.46945 * 306.04941 * 16 3 2 36 36 H 1.08004 * 119.99384 * 359.97438 * 18 17 16 37 37 H 1.08005 * 120.00619 * 180.26670 * 19 18 17 38 38 H 1.08000 * 120.00921 * 179.97438 * 22 20 19 39 39 H 1.08008 * 119.99326 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 7 2.0241 1.3366 0.0000 4 6 2.8647 1.5385 1.1878 5 6 2.0070 1.4067 2.4479 6 6 2.8824 1.6177 3.6849 7 16 1.8677 1.4625 5.1757 8 6 3.0929 1.7434 6.4104 9 1 4.1156 1.9368 6.1221 10 6 2.7439 1.7151 7.7535 11 7 1.4975 1.4789 8.1048 12 14 4.0430 2.0122 9.0625 13 1 4.1154 3.4637 9.3676 14 1 3.6844 1.2647 10.2944 15 1 5.3621 1.5445 8.5660 16 6 2.7884 1.5726 -1.2321 17 6 1.8478 1.5989 -2.4093 18 6 1.5618 0.4310 -3.0914 19 6 0.6949 0.4536 -4.1677 20 6 0.1222 1.6472 -4.5693 21 17 -0.9609 1.6776 -5.9257 22 6 0.4131 2.8167 -3.8897 23 6 1.2762 2.7920 -2.8104 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 3.6546 0.7878 1.2057 28 1 3.3094 2.5331 1.1533 29 1 1.2171 2.1576 2.4299 30 1 1.5624 0.4122 2.4824 31 1 3.6726 0.8672 3.7031 32 1 3.3268 2.6124 3.6502 33 1 1.2536 1.4595 9.0434 34 1 3.3073 2.5285 -1.1602 35 1 3.5166 0.7729 -1.3667 36 1 2.0128 -0.4999 -2.7807 37 1 0.4681 -0.4596 -4.6978 38 1 -0.0333 3.7488 -4.2031 39 1 1.5038 3.7049 -2.2801 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291357585.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:29:05 Heat of formation + Delta-G solvation = -10.487235 kcal Electronic energy + Delta-G solvation = -20667.665365 eV Core-core repulsion = 17342.089289 eV Total energy + Delta-G solvation = -3325.576075 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 315.080 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.43979 -38.53449 -37.39269 -35.66167 -34.60198 -34.19523 -32.00006 -31.50110 -27.98457 -27.27648 -27.15936 -24.39651 -23.77655 -22.33466 -22.04499 -19.55194 -18.17517 -17.76065 -17.06643 -16.88753 -16.65430 -16.31742 -15.98848 -15.91784 -15.59161 -14.83829 -14.59860 -14.54289 -14.43674 -14.34908 -13.90829 -13.58688 -13.35572 -13.28374 -12.91665 -12.85272 -12.58534 -12.42919 -12.36960 -12.23094 -12.06957 -11.77857 -11.73364 -11.40034 -11.13362 -10.88534 -10.30276 -9.97225 -9.79594 -9.50416 -8.65558 -8.36401 -6.12525 0.11255 0.36456 1.16652 1.32005 1.40159 1.49331 1.64115 1.79958 2.29534 2.67980 2.97777 3.31088 3.55928 3.81408 3.95394 3.99368 4.03190 4.25089 4.27992 4.39218 4.47500 4.53573 4.60109 4.62495 4.66013 4.72241 4.74356 4.78026 4.82483 4.92313 5.03986 5.18620 5.23494 5.28048 5.30679 5.40726 5.59337 5.71399 5.86227 6.03236 6.19102 7.05748 8.72972 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.039789 B = 0.002016 C = 0.001994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 703.536589 B =13884.619346 C =14039.007162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.046 3.954 2 O -0.275 6.275 3 N -0.364 5.364 4 C 0.056 3.944 5 C -0.077 4.077 6 C -0.086 4.086 7 S -0.201 6.201 8 C -0.536 4.536 9 H 0.074 0.926 10 C 0.013 3.987 11 N -0.908 5.908 12 Si 0.995 3.005 13 H -0.267 1.267 14 H -0.276 1.276 15 H -0.263 1.263 16 C 0.076 3.924 17 C -0.079 4.079 18 C -0.093 4.093 19 C -0.119 4.119 20 C -0.044 4.044 21 Cl -0.077 7.077 22 C -0.118 4.118 23 C -0.090 4.090 24 H 0.098 0.902 25 H 0.034 0.966 26 H 0.043 0.957 27 H 0.048 0.952 28 H 0.115 0.885 29 H 0.065 0.935 30 H 0.055 0.945 31 H 0.060 0.940 32 H 0.069 0.931 33 H 0.271 0.729 34 H 0.123 0.877 35 H 0.062 0.938 36 H 0.133 0.867 37 H 0.142 0.858 38 H 0.145 0.855 39 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.506 1.119 -27.458 27.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 O -0.279 6.279 3 N -0.133 5.133 4 C -0.073 4.073 5 C -0.116 4.116 6 C -0.236 4.236 7 S 0.028 5.972 8 C -0.684 4.684 9 H 0.092 0.908 10 C -0.192 4.192 11 N -0.544 5.544 12 Si 0.817 3.183 13 H -0.192 1.192 14 H -0.201 1.201 15 H -0.187 1.187 16 C -0.051 4.051 17 C -0.079 4.079 18 C -0.112 4.112 19 C -0.137 4.137 20 C -0.071 4.071 21 Cl -0.048 7.048 22 C -0.137 4.137 23 C -0.109 4.109 24 H 0.116 0.884 25 H 0.053 0.947 26 H 0.062 0.938 27 H 0.066 0.934 28 H 0.133 0.867 29 H 0.084 0.916 30 H 0.074 0.926 31 H 0.078 0.922 32 H 0.088 0.912 33 H 0.080 0.920 34 H 0.141 0.859 35 H 0.080 0.920 36 H 0.151 0.849 37 H 0.160 0.840 38 H 0.163 0.837 39 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -1.107 1.007 -27.292 27.333 hybrid contribution 1.981 -0.234 0.721 2.121 sum 0.875 0.773 -26.571 26.597 Atomic orbital electron populations 1.22624 0.80244 1.02229 1.00022 1.90645 1.21350 1.19049 1.96852 1.67694 1.34403 1.08612 1.02560 1.22410 0.94053 1.02747 0.88112 1.21016 0.97592 1.02062 0.90898 1.23143 1.00864 1.03121 0.96449 1.84695 1.19248 1.93954 0.99334 1.23042 0.96073 1.56140 0.93161 0.90781 1.26096 0.98529 0.94095 1.00470 1.70165 1.18914 1.47118 1.18248 0.84999 0.77856 0.78715 0.76731 1.19197 1.20063 1.18683 1.21487 0.93471 1.03635 0.86463 1.19830 0.98442 0.93663 0.95985 1.21139 0.97188 0.98457 0.94386 1.21181 0.97479 0.97231 0.97845 1.21104 0.97263 0.95990 0.92731 1.98370 1.63379 1.98902 1.44131 1.21249 0.98919 0.97616 0.95882 1.21231 0.95472 0.98603 0.95596 0.88407 0.94717 0.93802 0.93389 0.86740 0.91591 0.92640 0.92157 0.91187 0.92018 0.85885 0.92009 0.84949 0.84044 0.83673 0.83412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.05 11.51 113.37 1.30 2.35 16 2 O -0.27 -6.99 9.65 -50.17 -0.48 -7.47 16 3 N -0.36 -8.09 4.73 -517.94 -2.45 -10.54 16 4 C 0.06 1.33 5.29 86.30 0.46 1.79 16 5 C -0.08 -2.46 5.28 30.60 0.16 -2.30 16 6 C -0.09 -3.40 5.67 71.98 0.41 -2.99 16 7 S -0.20 -10.75 21.44 -56.49 -1.21 -11.96 16 8 C -0.54 -30.96 9.50 67.96 0.65 -30.32 16 9 H 0.07 4.09 7.80 -2.91 -0.02 4.07 16 10 C 0.01 0.73 5.49 84.86 0.47 1.20 16 11 N -0.91 -55.07 13.22 21.65 0.29 -54.78 16 12 Si 1.00 43.85 29.55 68.60 2.03 45.88 16 13 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 14 H -0.28 -11.74 7.11 99.48 0.71 -11.03 16 15 H -0.26 -11.05 7.11 99.48 0.71 -10.34 16 16 C 0.08 1.25 5.41 85.56 0.46 1.72 16 17 C -0.08 -1.29 5.17 -19.86 -0.10 -1.40 16 18 C -0.09 -1.52 9.39 22.27 0.21 -1.32 16 19 C -0.12 -1.88 9.83 22.29 0.22 -1.66 16 20 C -0.04 -0.72 6.32 22.32 0.14 -0.58 16 21 Cl -0.08 -1.21 28.96 -2.72 -0.08 -1.29 16 22 C -0.12 -1.78 9.83 22.29 0.22 -1.56 16 23 C -0.09 -1.35 9.70 22.26 0.22 -1.13 16 24 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 25 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 26 H 0.04 0.94 8.11 -2.39 -0.02 0.92 16 27 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 28 H 0.11 2.21 8.03 -2.39 -0.02 2.19 16 29 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 30 H 0.05 1.95 7.67 -2.39 -0.02 1.93 16 31 H 0.06 2.36 8.14 -2.40 -0.02 2.34 16 32 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 33 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 34 H 0.12 1.47 7.94 -2.39 -0.02 1.45 16 35 H 0.06 1.00 8.08 -2.39 -0.02 0.98 16 36 H 0.13 2.07 8.06 -2.91 -0.02 2.05 16 37 H 0.14 1.84 8.06 -2.91 -0.02 1.81 16 38 H 0.15 1.72 8.06 -2.91 -0.02 1.70 16 39 H 0.15 1.71 8.06 -2.91 -0.02 1.68 16 Total: -1.00 -67.99 364.31 3.92 -64.06 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: 1.02 Total: 12.28 kcal Atomic # 6 Polarization: -41.00 SS G_CDS: 4.81 Total: -36.19 kcal Atomic # 7 Polarization: -63.16 SS G_CDS: -2.16 Total: -65.32 kcal Atomic # 8 Polarization: -6.99 SS G_CDS: -0.48 Total: -7.47 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Atomic # 16 Polarization: -10.75 SS G_CDS: -1.21 Total: -11.96 kcal Atomic # 17 Polarization: -1.21 SS G_CDS: -0.08 Total: -1.29 kcal Total: -67.99 3.92 -64.06 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291357585.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.577 kcal (2) G-P(sol) polarization free energy of solvation -67.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds