Wall clock time and date at job start Tue Mar 31 2020 11:10:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09006 * 109.47254 * 2 1 4 4 C 1.50699 * 109.47332 * 120.00537 * 2 1 3 5 5 H 1.07998 * 119.99802 * 119.99939 * 4 2 1 6 6 C 1.37872 * 119.99831 * 299.99610 * 4 2 1 7 7 N 1.31513 * 119.99888 * 179.97438 * 6 4 2 8 8 Si 1.86797 * 120.00074 * 0.02562 * 6 4 2 9 9 H 1.48494 * 109.47895 * 89.99769 * 8 6 4 10 10 H 1.48502 * 109.47110 * 210.00119 * 8 6 4 11 11 H 1.48503 * 109.47035 * 329.99417 * 8 6 4 12 12 S 1.81403 * 109.46884 * 240.00416 * 2 1 3 13 13 C 1.76206 * 102.99910 * 169.60259 * 12 2 1 14 14 C 1.38783 * 120.10512 * 4.47141 * 13 12 2 15 15 C 1.38197 * 119.98798 * 179.97438 * 14 13 12 16 16 C 1.38302 * 120.19864 * 0.02562 * 15 14 13 17 17 C 1.38249 * 120.21295 * 359.67991 * 16 15 14 18 18 C 1.38650 * 120.00306 * 0.59734 * 17 16 15 19 19 N 1.40147 * 120.09935 * 179.70350 * 18 17 16 20 20 C 1.34774 * 119.99800 * 34.51088 * 19 18 17 21 21 O 1.21292 * 120.00253 * 355.76448 * 20 19 18 22 22 C 1.50705 * 119.99913 * 175.48728 * 20 19 18 23 23 C 1.52995 * 109.47117 * 205.27710 * 22 20 19 24 24 F 1.39898 * 109.47045 * 325.27802 * 22 20 19 25 25 F 1.39900 * 109.47061 * 85.27457 * 22 20 19 26 26 H 1.09007 * 109.47028 * 65.14272 * 1 2 3 27 27 H 1.08997 * 109.47238 * 185.14749 * 1 2 3 28 28 H 1.09004 * 109.46823 * 305.14662 * 1 2 3 29 29 H 0.97005 * 119.99845 * 180.02562 * 7 6 4 30 30 H 1.08001 * 120.00632 * 0.02562 * 14 13 12 31 31 H 1.07994 * 119.89828 * 180.02562 * 15 14 13 32 32 H 1.08004 * 119.89098 * 179.97438 * 16 15 14 33 33 H 1.07995 * 120.00275 * 180.32509 * 17 16 15 34 34 H 0.96993 * 120.00153 * 214.52073 * 19 18 17 35 35 H 1.09002 * 109.46970 * 60.00180 * 23 22 20 36 36 H 1.09001 * 109.46592 * 179.97438 * 23 22 20 37 37 H 1.08997 * 109.46923 * 299.99852 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1311 6 6 1.6993 -0.2395 2.4826 7 7 2.1373 -0.8599 3.5564 8 14 0.6249 1.2789 2.6542 9 1 -0.8027 0.8727 2.6999 10 1 0.9761 1.9949 3.9069 11 1 0.8472 2.1764 1.4921 12 16 2.1345 -0.8550 -1.4812 13 6 3.8588 -0.4921 -1.4723 14 6 4.4169 0.2103 -0.4134 15 6 5.7696 0.4931 -0.4087 16 6 6.5706 0.0787 -1.4571 17 6 6.0245 -0.6268 -2.5132 18 6 4.6674 -0.9103 -2.5296 19 7 4.1105 -1.6199 -3.6022 20 6 4.8244 -2.5851 -4.2147 21 8 5.9751 -2.7876 -3.8890 22 6 4.1910 -3.4171 -5.3000 23 6 4.9026 -4.7686 -5.3874 24 9 2.8391 -3.6201 -5.0029 25 9 4.3043 -2.7503 -6.5247 26 1 -0.3633 0.4320 -0.9325 27 1 -0.3633 -1.0235 0.0922 28 1 -0.3633 0.5916 0.8403 29 1 1.9027 -0.5287 4.4374 30 1 3.7943 0.5350 0.4071 31 1 6.2024 1.0394 0.4162 32 1 7.6271 0.3028 -1.4485 33 1 6.6541 -0.9533 -3.3276 34 1 3.2114 -1.4164 -3.9038 35 1 4.8143 -5.2881 -4.4332 36 1 4.4441 -5.3704 -6.1721 37 1 5.9559 -4.6104 -5.6189 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000294027646.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:24 Heat of formation + Delta-G solvation = -118.751155 kcal Electronic energy + Delta-G solvation = -24002.792064 eV Core-core repulsion = 20120.724633 eV Total energy + Delta-G solvation = -3882.067431 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.085 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -50.38735 -48.37770 -41.69689 -39.52894 -36.43696 -35.93632 -33.26304 -32.75726 -31.98073 -30.74229 -27.29564 -26.35739 -24.14574 -23.91619 -22.84207 -21.78043 -19.97559 -19.09222 -18.92515 -18.72305 -18.11625 -17.40071 -17.16611 -16.78364 -16.38092 -16.07328 -15.58778 -15.31679 -15.14605 -15.04598 -14.75208 -14.68282 -14.52596 -14.22666 -14.05442 -13.65922 -13.56929 -13.39105 -13.18369 -13.05769 -12.93546 -12.64452 -12.46921 -12.13980 -11.69552 -11.55520 -11.44807 -11.15537 -10.86193 -10.81058 -10.57978 -9.45274 -8.36836 -8.18931 -6.42924 0.04876 0.34741 0.74806 0.93853 1.29338 1.34453 1.36005 1.43764 1.64908 2.26158 2.47337 2.73849 2.77833 2.98318 3.26958 3.38516 3.91712 4.14667 4.29716 4.30449 4.41660 4.44563 4.48848 4.52991 4.55769 4.57342 4.83998 4.88123 4.94924 5.14366 5.21058 5.27073 5.37065 5.39697 5.57426 5.90722 5.98492 6.10944 6.49179 6.61205 7.19747 8.80067 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.018765 B = 0.004217 C = 0.003744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1491.793532 B = 6638.607415 C = 7477.146840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.044 3.956 3 H 0.053 0.947 4 C -0.515 4.515 5 H 0.039 0.961 6 C 0.029 3.971 7 N -0.935 5.935 8 Si 0.940 3.060 9 H -0.262 1.262 10 H -0.297 1.297 11 H -0.244 1.244 12 S -0.140 6.140 13 C -0.101 4.101 14 C -0.120 4.120 15 C -0.116 4.116 16 C -0.107 4.107 17 C -0.114 4.114 18 C 0.129 3.871 19 N -0.643 5.643 20 C 0.482 3.518 21 O -0.506 6.506 22 C 0.291 3.709 23 C -0.179 4.179 24 F -0.187 7.187 25 F -0.181 7.181 26 H 0.075 0.925 27 H 0.058 0.942 28 H 0.053 0.947 29 H 0.269 0.731 30 H 0.130 0.870 31 H 0.143 0.857 32 H 0.160 0.840 33 H 0.146 0.854 34 H 0.422 0.578 35 H 0.096 0.904 36 H 0.118 0.882 37 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.516 -0.474 -17.489 18.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.085 4.085 3 H 0.071 0.929 4 C -0.553 4.553 5 H 0.058 0.942 6 C -0.171 4.171 7 N -0.573 5.573 8 Si 0.766 3.234 9 H -0.188 1.188 10 H -0.224 1.224 11 H -0.168 1.168 12 S 0.106 5.894 13 C -0.216 4.216 14 C -0.144 4.144 15 C -0.136 4.136 16 C -0.128 4.128 17 C -0.135 4.135 18 C 0.029 3.971 19 N -0.289 5.289 20 C 0.265 3.735 21 O -0.380 6.380 22 C 0.251 3.749 23 C -0.237 4.237 24 F -0.169 7.169 25 F -0.162 7.162 26 H 0.094 0.906 27 H 0.078 0.922 28 H 0.072 0.928 29 H 0.078 0.922 30 H 0.148 0.852 31 H 0.161 0.839 32 H 0.177 0.823 33 H 0.163 0.837 34 H 0.260 0.740 35 H 0.115 0.885 36 H 0.136 0.864 37 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 4.490 -1.318 -17.900 18.502 hybrid contribution -0.448 1.293 1.565 2.079 sum 4.042 -0.024 -16.335 16.828 Atomic orbital electron populations 1.21923 0.93923 1.02302 1.01348 1.21351 0.96862 0.97285 0.92955 0.92912 1.21025 1.32089 1.12721 0.89485 0.94236 1.25753 0.96671 0.99631 0.95070 1.70015 1.46551 1.42039 0.98744 0.85980 0.79568 0.80077 0.77769 1.18808 1.22420 1.16777 1.84216 0.99834 1.70336 1.34995 1.21613 0.97962 1.05122 0.96951 1.21595 0.97237 0.98620 0.96957 1.21393 0.92564 1.00178 0.99502 1.21364 1.01181 0.97383 0.92899 1.21245 0.92551 0.98920 1.00800 1.17307 0.93171 0.98660 0.87918 1.43436 1.19728 1.34437 1.31282 1.21377 0.87288 0.80740 0.84112 1.90745 1.16600 1.67590 1.63078 1.21361 0.79325 0.94867 0.79313 1.22727 1.03160 0.90583 1.07186 1.93102 1.34911 1.95716 1.93124 1.93097 1.95861 1.82726 1.44510 0.90615 0.92245 0.92847 0.92170 0.85197 0.83906 0.82264 0.83685 0.73979 0.88522 0.86381 0.87448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.27 8.61 71.98 0.62 -4.65 16 2 C 0.04 1.94 1.61 29.85 0.05 1.99 16 3 H 0.05 2.30 6.40 -2.39 -0.02 2.29 16 4 C -0.51 -27.39 7.06 25.60 0.18 -27.21 16 5 H 0.04 2.43 7.96 -2.91 -0.02 2.41 16 6 C 0.03 1.60 5.45 84.65 0.46 2.06 16 7 N -0.93 -55.42 13.96 21.45 0.30 -55.12 16 8 Si 0.94 41.22 24.32 68.60 1.67 42.89 16 9 H -0.26 -10.94 6.92 99.48 0.69 -10.25 16 10 H -0.30 -13.15 7.11 99.48 0.71 -12.44 16 11 H -0.24 -9.77 6.53 99.48 0.65 -9.12 16 12 S -0.14 -5.49 20.11 -56.49 -1.14 -6.63 16 13 C -0.10 -3.95 6.11 22.71 0.14 -3.81 16 14 C -0.12 -4.78 8.85 22.39 0.20 -4.58 16 15 C -0.12 -3.78 10.04 22.28 0.22 -3.56 16 16 C -0.11 -3.04 10.04 22.29 0.22 -2.82 16 17 C -0.11 -3.55 8.70 22.37 0.19 -3.35 16 18 C 0.13 4.43 6.32 38.22 0.24 4.67 16 19 N -0.64 -19.11 4.93 -303.00 -1.49 -20.61 16 20 C 0.48 13.22 7.08 87.66 0.62 13.84 16 21 O -0.51 -15.53 13.51 -3.07 -0.04 -15.57 16 22 C 0.29 6.24 2.46 29.85 0.07 6.31 16 23 C -0.18 -2.76 8.92 71.98 0.64 -2.12 16 24 F -0.19 -4.33 16.55 44.97 0.74 -3.59 16 25 F -0.18 -3.86 17.05 44.97 0.77 -3.10 16 26 H 0.08 2.42 8.14 -2.38 -0.02 2.40 16 27 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 28 H 0.05 2.08 3.42 -2.38 -0.01 2.07 16 29 H 0.27 14.95 8.31 -92.70 -0.77 14.18 16 30 H 0.13 5.86 4.82 -2.91 -0.01 5.84 16 31 H 0.14 3.97 8.06 -2.91 -0.02 3.95 16 32 H 0.16 3.30 8.06 -2.91 -0.02 3.28 16 33 H 0.15 4.25 6.19 -2.91 -0.02 4.23 16 34 H 0.42 11.52 7.59 -92.71 -0.70 10.81 16 35 H 0.10 1.51 8.14 -2.39 -0.02 1.50 16 36 H 0.12 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.11 1.56 7.87 -2.39 -0.02 1.54 16 Total: -1.00 -63.77 323.45 5.02 -58.75 By element: Atomic # 1 Polarization: 25.85 SS G_CDS: 0.35 Total: 26.20 kcal Atomic # 6 Polarization: -27.09 SS G_CDS: 3.87 Total: -23.23 kcal Atomic # 7 Polarization: -74.53 SS G_CDS: -1.19 Total: -75.73 kcal Atomic # 8 Polarization: -15.53 SS G_CDS: -0.04 Total: -15.57 kcal Atomic # 9 Polarization: -8.20 SS G_CDS: 1.51 Total: -6.69 kcal Atomic # 14 Polarization: 41.22 SS G_CDS: 1.67 Total: 42.89 kcal Atomic # 16 Polarization: -5.49 SS G_CDS: -1.14 Total: -6.63 kcal Total: -63.77 5.02 -58.75 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294027646.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.005 kcal (2) G-P(sol) polarization free energy of solvation -63.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds