Wall clock time and date at job start Tue Mar 31 2020 10:29:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38279 * 119.93129 * 2 1 4 4 C 1.38112 * 120.07227 * 180.27773 * 3 2 1 5 5 C 1.38880 * 119.92591 * 359.46855 * 4 3 2 6 6 N 1.39921 * 120.06637 * 180.29734 * 5 4 3 7 7 C 1.46504 * 119.99709 * 247.88943 * 6 5 4 8 8 C 1.50697 * 109.46906 * 90.00866 * 7 6 5 9 9 H 1.08004 * 120.00315 * 359.97438 * 8 7 6 10 10 C 1.37878 * 120.00353 * 179.97438 * 8 7 6 11 11 N 1.31514 * 120.00391 * 179.97438 * 10 8 7 12 12 Si 1.86799 * 119.99694 * 0.02562 * 10 8 7 13 13 H 1.48507 * 109.47341 * 89.99663 * 12 10 8 14 14 H 1.48500 * 109.47361 * 209.99962 * 12 10 8 15 15 H 1.48503 * 109.47252 * 329.99932 * 12 10 8 16 16 C 1.34777 * 120.00051 * 67.90141 * 6 5 4 17 17 O 1.21286 * 120.00048 * 4.72389 * 16 6 5 18 18 C 1.50700 * 119.99602 * 184.73635 * 16 6 5 19 19 S 1.81408 * 109.46740 * 179.97438 * 18 16 6 20 20 C 1.81405 * 102.99845 * 179.97438 * 19 18 16 21 21 F 1.39902 * 109.46778 * 299.99746 * 20 19 18 22 22 F 1.39896 * 109.47260 * 59.99677 * 20 19 18 23 23 C 1.38874 * 119.85729 * 0.27850 * 5 4 3 24 24 C 1.38114 * 119.93006 * 359.97438 * 23 5 4 25 25 H 1.08997 * 109.47146 * 270.23432 * 1 2 3 26 26 H 1.09000 * 109.47057 * 30.22851 * 1 2 3 27 27 H 1.08997 * 109.47241 * 150.23012 * 1 2 3 28 28 H 1.08000 * 119.96745 * 0.04534 * 3 2 1 29 29 H 1.07999 * 120.04037 * 179.73762 * 4 3 2 30 30 H 1.08998 * 109.47136 * 210.00180 * 7 6 5 31 31 H 1.08997 * 109.47384 * 330.00615 * 7 6 5 32 32 H 0.96997 * 119.99949 * 179.97438 * 11 10 8 33 33 H 1.09006 * 109.46923 * 299.99072 * 18 16 6 34 34 H 1.08999 * 109.47466 * 59.99499 * 18 16 6 35 35 H 1.08998 * 109.46880 * 180.02562 * 20 19 18 36 36 H 1.08001 * 120.03091 * 180.02562 * 23 5 4 37 37 H 1.08000 * 119.96158 * 180.02562 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1984 0.0000 4 6 3.5780 1.2018 -0.0058 5 6 4.2739 -0.0001 -0.0005 6 7 5.6731 -0.0001 0.0000 7 6 6.4059 -0.4826 -1.1732 8 6 6.6575 0.6660 -2.1157 9 1 6.3062 1.6564 -1.8661 10 6 7.3361 0.4528 -3.2969 11 7 7.5552 1.4551 -4.1196 12 14 7.9430 -1.2602 -3.7291 13 1 6.8917 -1.9800 -4.4920 14 1 9.1715 -1.1559 -4.5569 15 1 8.2483 -2.0065 -2.4821 16 6 6.3466 0.4437 1.0798 17 8 5.7430 0.7622 2.0823 18 6 7.8498 0.5442 1.0412 19 16 8.4549 1.1696 2.6330 20 6 10.2526 1.2192 2.3951 21 9 10.7209 -0.0679 2.1099 22 9 10.5587 2.0733 1.3303 23 6 3.5780 -1.2019 0.0048 24 6 2.1968 -1.1984 0.0053 25 1 -0.3633 0.0042 1.0276 26 1 -0.3633 0.8879 -0.5174 27 1 -0.3633 -0.8920 -0.5102 28 1 1.6553 2.1327 0.0007 29 1 4.1164 2.1380 -0.0101 30 1 7.3583 -0.9083 -0.8570 31 1 5.8170 -1.2467 -1.6806 32 1 8.0329 1.3051 -4.9504 33 1 8.2751 -0.4415 0.8524 34 1 8.1480 1.2271 0.2458 35 1 10.7294 1.5858 3.3041 36 1 4.1163 -2.1382 0.0094 37 1 1.6551 -2.1327 0.0098 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000294790776.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:29:47 Heat of formation + Delta-G solvation = -97.550717 kcal Electronic energy + Delta-G solvation = -23768.671810 eV Core-core repulsion = 19887.523698 eV Total energy + Delta-G solvation = -3881.148111 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.085 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.09626 -47.18553 -40.10277 -38.30210 -35.46706 -32.89823 -31.83586 -30.64877 -29.62837 -28.22778 -26.87788 -25.80296 -23.01967 -22.10799 -21.57808 -19.37443 -18.07966 -17.61505 -17.39543 -17.20791 -17.08390 -16.12674 -15.45758 -15.19671 -14.84489 -14.63966 -14.27661 -14.02875 -13.93760 -13.59818 -13.51610 -13.22788 -13.13590 -13.08197 -12.60708 -12.48895 -12.15801 -12.07610 -11.71782 -11.54007 -11.34383 -11.15353 -10.86638 -10.75649 -10.41143 -10.12962 -9.76603 -9.59874 -8.82857 -8.62846 -8.59918 -8.10764 -7.75789 -6.31296 -4.35012 0.89457 1.59405 1.74616 1.97144 2.93326 3.11022 3.17036 3.20253 3.51983 3.77073 4.05159 4.17355 4.38013 4.47101 4.88373 4.98467 5.07209 5.10471 5.25015 5.29681 5.50164 5.66456 5.68462 5.71754 5.81538 5.97997 6.01372 6.29771 6.36649 6.44181 6.60998 6.85161 6.87254 7.02575 7.28615 7.41914 7.76782 8.22485 8.54371 8.73364 9.25878 10.80863 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.010218 B = 0.005355 C = 0.003905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2739.730410 B = 5227.454156 C = 7167.891270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.100 4.100 3 C -0.111 4.111 4 C -0.095 4.095 5 C 0.165 3.835 6 N -0.548 5.548 7 C 0.207 3.793 8 C -0.548 4.548 9 H 0.081 0.919 10 C 0.081 3.919 11 N -0.884 5.884 12 Si 0.868 3.132 13 H -0.271 1.271 14 H -0.281 1.281 15 H -0.264 1.264 16 C 0.544 3.456 17 O -0.534 6.534 18 C -0.117 4.117 19 S -0.170 6.170 20 C 0.270 3.730 21 F -0.191 7.191 22 F -0.185 7.185 23 C -0.120 4.120 24 C -0.114 4.114 25 H 0.066 0.934 26 H 0.063 0.937 27 H 0.063 0.937 28 H 0.121 0.879 29 H 0.122 0.878 30 H 0.037 0.963 31 H 0.037 0.963 32 H 0.268 0.732 33 H 0.118 0.882 34 H 0.139 0.861 35 H 0.149 0.851 36 H 0.121 0.879 37 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.770 -3.642 10.076 11.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.100 4.100 3 C -0.130 4.130 4 C -0.115 4.115 5 C 0.074 3.926 6 N -0.275 5.275 7 C 0.088 3.912 8 C -0.586 4.586 9 H 0.099 0.901 10 C -0.124 4.124 11 N -0.521 5.521 12 Si 0.695 3.305 13 H -0.197 1.197 14 H -0.206 1.206 15 H -0.189 1.189 16 C 0.331 3.669 17 O -0.412 6.412 18 C -0.267 4.267 19 S 0.052 5.948 20 C 0.107 3.893 21 F -0.172 7.172 22 F -0.167 7.167 23 C -0.140 4.140 24 C -0.132 4.132 25 H 0.084 0.916 26 H 0.082 0.918 27 H 0.082 0.918 28 H 0.139 0.861 29 H 0.140 0.860 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.079 0.921 33 H 0.136 0.864 34 H 0.157 0.843 35 H 0.165 0.835 36 H 0.139 0.861 37 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -3.482 -3.154 11.261 12.202 hybrid contribution 1.345 -1.197 -1.897 2.615 sum -2.137 -4.351 9.364 10.545 Atomic orbital electron populations 1.20729 0.91491 1.02449 1.01887 1.19834 0.95801 0.93205 1.01169 1.20837 0.93512 0.97453 1.01164 1.21241 0.94104 0.97706 0.98450 1.17477 0.82619 0.93126 0.99336 1.45417 1.03578 1.62273 1.16257 1.20025 0.91706 0.96432 0.83084 1.21275 1.38140 0.95742 1.03410 0.90093 1.24837 0.95041 0.96804 0.95703 1.69872 1.40185 1.31023 1.10977 0.86969 0.79235 0.84912 0.79427 1.19688 1.20599 1.18850 1.19382 0.87732 0.77053 0.82767 1.90703 1.69612 1.49450 1.31437 1.23657 0.97561 1.07359 0.98143 1.87964 0.98270 1.86842 1.21717 1.24419 0.97515 0.76035 0.91353 1.93094 1.89916 1.39246 1.94970 1.93133 1.94049 1.69891 1.59588 1.21141 0.94281 0.97218 1.01341 1.20758 0.93353 0.97383 1.01744 0.91563 0.91752 0.91837 0.86091 0.85956 0.94481 0.94529 0.92146 0.86414 0.84330 0.83454 0.86081 0.86146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.14 10.01 36.01 0.36 -0.78 16 2 C -0.10 -1.43 5.88 -104.59 -0.62 -2.04 16 3 C -0.11 -1.75 9.69 -39.61 -0.38 -2.14 16 4 C -0.10 -1.80 9.55 -39.39 -0.38 -2.18 16 5 C 0.17 3.25 4.75 -83.69 -0.40 2.85 16 6 N -0.55 -11.28 2.51 -114.74 -0.29 -11.56 16 7 C 0.21 4.50 3.95 -5.19 -0.02 4.48 16 8 C -0.55 -14.09 9.71 -34.44 -0.33 -14.42 16 9 H 0.08 2.33 8.06 -52.48 -0.42 1.90 16 10 C 0.08 2.14 5.47 -17.82 -0.10 2.05 16 11 N -0.88 -25.25 13.96 55.43 0.77 -24.47 16 12 Si 0.87 19.46 27.47 -169.99 -4.67 14.79 16 13 H -0.27 -6.04 7.11 56.52 0.40 -5.63 16 14 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 15 H -0.26 -5.52 6.54 56.52 0.37 -5.15 16 16 C 0.54 11.01 7.55 -10.99 -0.08 10.92 16 17 O -0.53 -11.75 15.62 5.55 0.09 -11.67 16 18 C -0.12 -2.08 5.06 36.01 0.18 -1.90 16 19 S -0.17 -2.64 21.11 -107.50 -2.27 -4.91 16 20 C 0.27 3.36 5.91 101.05 0.60 3.96 16 21 F -0.19 -2.61 17.36 2.25 0.04 -2.57 16 22 F -0.18 -2.74 17.36 2.25 0.04 -2.70 16 23 C -0.12 -2.05 9.69 -39.39 -0.38 -2.43 16 24 C -0.11 -1.67 9.69 -39.61 -0.38 -2.05 16 25 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 26 H 0.06 0.62 8.09 -51.93 -0.42 0.20 16 27 H 0.06 0.59 8.08 -51.93 -0.42 0.17 16 28 H 0.12 1.60 8.06 -52.49 -0.42 1.18 16 29 H 0.12 2.40 8.06 -52.49 -0.42 1.97 16 30 H 0.04 0.77 5.53 -51.93 -0.29 0.48 16 31 H 0.04 0.78 7.29 -51.93 -0.38 0.40 16 32 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 33 H 0.12 1.93 7.26 -51.92 -0.38 1.55 16 34 H 0.14 2.64 7.91 -51.92 -0.41 2.23 16 35 H 0.15 1.19 8.14 -51.92 -0.42 0.77 16 36 H 0.12 1.89 8.06 -52.49 -0.42 1.47 16 37 H 0.12 1.41 8.06 -52.49 -0.42 0.99 16 LS Contribution 342.08 15.07 5.16 5.16 Total: -1.00 -30.49 342.08 -7.49 -37.97 By element: Atomic # 1 Polarization: 8.07 SS G_CDS: -4.42 Total: 3.65 kcal Atomic # 6 Polarization: -1.76 SS G_CDS: -1.93 Total: -3.69 kcal Atomic # 7 Polarization: -36.52 SS G_CDS: 0.49 Total: -36.04 kcal Atomic # 8 Polarization: -11.75 SS G_CDS: 0.09 Total: -11.67 kcal Atomic # 9 Polarization: -5.35 SS G_CDS: 0.08 Total: -5.27 kcal Atomic # 14 Polarization: 19.46 SS G_CDS: -4.67 Total: 14.79 kcal Atomic # 16 Polarization: -2.64 SS G_CDS: -2.27 Total: -4.91 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -30.49 -7.49 -37.97 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294790776.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.578 kcal (2) G-P(sol) polarization free energy of solvation -30.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds