Wall clock time and date at job start Tue Mar 31 2020 10:29:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38279 * 119.93129 * 2 1 4 4 C 1.38112 * 120.07227 * 180.27773 * 3 2 1 5 5 C 1.38880 * 119.92591 * 359.46855 * 4 3 2 6 6 N 1.39921 * 120.06637 * 180.29734 * 5 4 3 7 7 C 1.46504 * 119.99709 * 247.88943 * 6 5 4 8 8 C 1.50697 * 109.46906 * 90.00866 * 7 6 5 9 9 H 1.08004 * 120.00315 * 359.97438 * 8 7 6 10 10 C 1.37878 * 120.00353 * 179.97438 * 8 7 6 11 11 N 1.31514 * 120.00391 * 179.97438 * 10 8 7 12 12 Si 1.86799 * 119.99694 * 0.02562 * 10 8 7 13 13 H 1.48507 * 109.47341 * 89.99663 * 12 10 8 14 14 H 1.48500 * 109.47361 * 209.99962 * 12 10 8 15 15 H 1.48503 * 109.47252 * 329.99932 * 12 10 8 16 16 C 1.34777 * 120.00051 * 67.90141 * 6 5 4 17 17 O 1.21286 * 120.00048 * 4.72389 * 16 6 5 18 18 C 1.50700 * 119.99602 * 184.73635 * 16 6 5 19 19 S 1.81408 * 109.46740 * 179.97438 * 18 16 6 20 20 C 1.81405 * 102.99845 * 179.97438 * 19 18 16 21 21 F 1.39902 * 109.46778 * 299.99746 * 20 19 18 22 22 F 1.39896 * 109.47260 * 59.99677 * 20 19 18 23 23 C 1.38874 * 119.85729 * 0.27850 * 5 4 3 24 24 C 1.38114 * 119.93006 * 359.97438 * 23 5 4 25 25 H 1.08997 * 109.47146 * 270.23432 * 1 2 3 26 26 H 1.09000 * 109.47057 * 30.22851 * 1 2 3 27 27 H 1.08997 * 109.47241 * 150.23012 * 1 2 3 28 28 H 1.08000 * 119.96745 * 0.04534 * 3 2 1 29 29 H 1.07999 * 120.04037 * 179.73762 * 4 3 2 30 30 H 1.08998 * 109.47136 * 210.00180 * 7 6 5 31 31 H 1.08997 * 109.47384 * 330.00615 * 7 6 5 32 32 H 0.96997 * 119.99949 * 179.97438 * 11 10 8 33 33 H 1.09006 * 109.46923 * 299.99072 * 18 16 6 34 34 H 1.08999 * 109.47466 * 59.99499 * 18 16 6 35 35 H 1.08998 * 109.46880 * 180.02562 * 20 19 18 36 36 H 1.08001 * 120.03091 * 180.02562 * 23 5 4 37 37 H 1.08000 * 119.96158 * 180.02562 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1984 0.0000 4 6 3.5780 1.2018 -0.0058 5 6 4.2739 -0.0001 -0.0005 6 7 5.6731 -0.0001 0.0000 7 6 6.4059 -0.4826 -1.1732 8 6 6.6575 0.6660 -2.1157 9 1 6.3062 1.6564 -1.8661 10 6 7.3361 0.4528 -3.2969 11 7 7.5552 1.4551 -4.1196 12 14 7.9430 -1.2602 -3.7291 13 1 6.8917 -1.9800 -4.4920 14 1 9.1715 -1.1559 -4.5569 15 1 8.2483 -2.0065 -2.4821 16 6 6.3466 0.4437 1.0798 17 8 5.7430 0.7622 2.0823 18 6 7.8498 0.5442 1.0412 19 16 8.4549 1.1696 2.6330 20 6 10.2526 1.2192 2.3951 21 9 10.7209 -0.0679 2.1099 22 9 10.5587 2.0733 1.3303 23 6 3.5780 -1.2019 0.0048 24 6 2.1968 -1.1984 0.0053 25 1 -0.3633 0.0042 1.0276 26 1 -0.3633 0.8879 -0.5174 27 1 -0.3633 -0.8920 -0.5102 28 1 1.6553 2.1327 0.0007 29 1 4.1164 2.1380 -0.0101 30 1 7.3583 -0.9083 -0.8570 31 1 5.8170 -1.2467 -1.6806 32 1 8.0329 1.3051 -4.9504 33 1 8.2751 -0.4415 0.8524 34 1 8.1480 1.2271 0.2458 35 1 10.7294 1.5858 3.3041 36 1 4.1163 -2.1382 0.0094 37 1 1.6551 -2.1327 0.0098 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000294790776.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:29:47 Heat of formation + Delta-G solvation = -114.153176 kcal Electronic energy + Delta-G solvation = -23769.391746 eV Core-core repulsion = 19887.523698 eV Total energy + Delta-G solvation = -3881.868048 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.085 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -50.18904 -48.28887 -41.59556 -39.66038 -37.07154 -34.77062 -33.23358 -31.92198 -31.01571 -30.02172 -27.91476 -27.00085 -24.77300 -23.52946 -22.87881 -20.76655 -19.31842 -19.18559 -18.66066 -18.61721 -18.47634 -17.72320 -16.98084 -16.45574 -16.12875 -16.07155 -15.95103 -15.31493 -15.16286 -14.85518 -14.62528 -14.56206 -14.39804 -14.29745 -14.26293 -13.95374 -13.86781 -13.26192 -13.02118 -12.85020 -12.66079 -12.53676 -12.42315 -12.16046 -11.95527 -11.77115 -11.32408 -11.20261 -10.85159 -10.13169 -9.88929 -9.37346 -9.17685 -8.36207 -6.45431 -0.26127 0.29791 0.45656 0.67275 1.35377 1.35972 1.36232 1.45472 2.00577 2.28258 2.75548 2.82408 2.97214 3.33053 3.41794 3.51748 3.81192 3.92464 4.03186 4.06112 4.18670 4.39490 4.46491 4.50444 4.64809 4.75312 4.83102 4.91619 5.11209 5.15436 5.30710 5.37351 5.49931 5.65570 5.67029 6.00102 6.11810 6.31725 6.59162 6.96812 7.20204 8.79827 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.010218 B = 0.005355 C = 0.003905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2739.730410 B = 5227.454156 C = 7167.891270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.094 4.094 3 C -0.117 4.117 4 C -0.126 4.126 5 C 0.123 3.877 6 N -0.549 5.549 7 C 0.216 3.784 8 C -0.545 4.545 9 H 0.030 0.970 10 C 0.024 3.976 11 N -0.937 5.937 12 Si 0.936 3.064 13 H -0.263 1.263 14 H -0.282 1.282 15 H -0.234 1.234 16 C 0.537 3.463 17 O -0.557 6.557 18 C -0.115 4.115 19 S -0.188 6.188 20 C 0.279 3.721 21 F -0.194 7.194 22 F -0.199 7.199 23 C -0.129 4.129 24 C -0.109 4.109 25 H 0.082 0.918 26 H 0.073 0.927 27 H 0.082 0.918 28 H 0.141 0.859 29 H 0.094 0.906 30 H 0.056 0.944 31 H 0.048 0.952 32 H 0.270 0.730 33 H 0.133 0.867 34 H 0.119 0.881 35 H 0.204 0.796 36 H 0.135 0.865 37 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.506 -6.313 10.934 13.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.094 4.094 3 C -0.135 4.135 4 C -0.146 4.146 5 C 0.033 3.967 6 N -0.276 5.276 7 C 0.096 3.904 8 C -0.584 4.584 9 H 0.049 0.951 10 C -0.176 4.176 11 N -0.576 5.576 12 Si 0.758 3.242 13 H -0.188 1.188 14 H -0.207 1.207 15 H -0.157 1.157 16 C 0.326 3.674 17 O -0.436 6.436 18 C -0.265 4.265 19 S 0.034 5.966 20 C 0.117 3.883 21 F -0.176 7.176 22 F -0.180 7.180 23 C -0.148 4.148 24 C -0.127 4.127 25 H 0.101 0.899 26 H 0.092 0.908 27 H 0.101 0.899 28 H 0.159 0.841 29 H 0.112 0.888 30 H 0.074 0.926 31 H 0.066 0.934 32 H 0.079 0.921 33 H 0.151 0.849 34 H 0.137 0.863 35 H 0.220 0.780 36 H 0.153 0.847 37 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -4.239 -5.831 12.138 14.118 hybrid contribution 1.474 -0.249 -2.117 2.592 sum -2.765 -6.080 10.021 12.043 Atomic orbital electron populations 1.20814 0.88177 1.03957 1.03337 1.20344 0.98116 0.92288 0.98619 1.21132 0.92289 0.99469 1.00629 1.21252 0.95734 0.96692 1.00879 1.17868 0.82317 0.94452 1.02041 1.45406 1.04338 1.62119 1.15741 1.19854 0.92861 0.94867 0.82862 1.21382 1.37444 0.95068 1.04462 0.95124 1.25755 0.95139 1.01350 0.95370 1.70037 1.41838 1.33889 1.11804 0.85885 0.78549 0.79479 0.80279 1.18821 1.20747 1.15688 1.19783 0.88738 0.76488 0.82440 1.90667 1.70362 1.50372 1.32205 1.23526 0.96104 1.07785 0.99129 1.87921 1.01769 1.86849 1.20050 1.24852 0.95123 0.75653 0.92654 1.93083 1.89605 1.39753 1.95121 1.93109 1.93862 1.70369 1.60703 1.21390 0.95567 0.96591 1.01269 1.21236 0.92510 0.99163 0.99781 0.89940 0.90812 0.89876 0.84084 0.88790 0.92629 0.93359 0.92085 0.84867 0.86322 0.78011 0.84746 0.82330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.83 10.01 71.24 0.71 -1.11 16 2 C -0.09 -2.46 5.88 -19.85 -0.12 -2.57 16 3 C -0.12 -3.67 9.69 22.25 0.22 -3.46 16 4 C -0.13 -5.02 9.55 22.39 0.21 -4.81 16 5 C 0.12 4.98 4.75 38.16 0.18 5.16 16 6 N -0.55 -23.29 2.51 -635.30 -1.59 -24.88 16 7 C 0.22 9.40 3.95 85.63 0.34 9.74 16 8 C -0.55 -29.23 9.71 25.60 0.25 -28.98 16 9 H 0.03 1.90 8.06 -2.91 -0.02 1.88 16 10 C 0.02 1.28 5.47 84.65 0.46 1.74 16 11 N -0.94 -55.63 13.96 21.45 0.30 -55.33 16 12 Si 0.94 39.58 27.47 68.60 1.88 41.46 16 13 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 14 H -0.28 -11.94 7.11 99.48 0.71 -11.24 16 15 H -0.23 -8.70 6.54 99.48 0.65 -8.05 16 16 C 0.54 22.55 7.55 87.66 0.66 23.21 16 17 O -0.56 -25.42 15.62 -3.05 -0.05 -25.46 16 18 C -0.11 -4.19 5.06 71.24 0.36 -3.82 16 19 S -0.19 -5.78 21.11 -56.49 -1.19 -6.98 16 20 C 0.28 6.45 5.91 113.37 0.67 7.12 16 21 F -0.19 -4.91 17.36 44.97 0.78 -4.13 16 22 F -0.20 -5.71 17.36 44.97 0.78 -4.93 16 23 C -0.13 -4.26 9.69 22.39 0.22 -4.04 16 24 C -0.11 -2.89 9.69 22.25 0.22 -2.68 16 25 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 26 H 0.07 1.16 8.09 -2.39 -0.02 1.14 16 27 H 0.08 1.15 8.08 -2.39 -0.02 1.13 16 28 H 0.14 3.69 8.06 -2.91 -0.02 3.66 16 29 H 0.09 4.11 8.06 -2.91 -0.02 4.09 16 30 H 0.06 2.22 5.53 -2.39 -0.01 2.21 16 31 H 0.05 2.00 7.29 -2.39 -0.02 1.99 16 32 H 0.27 14.96 8.31 -92.71 -0.77 14.19 16 33 H 0.13 4.30 7.26 -2.39 -0.02 4.29 16 34 H 0.12 4.76 7.91 -2.39 -0.02 4.74 16 35 H 0.20 2.55 8.14 -2.39 -0.02 2.53 16 36 H 0.13 3.95 8.06 -2.91 -0.02 3.93 16 37 H 0.16 2.98 8.06 -2.91 -0.02 2.95 16 Total: -1.00 -70.52 342.08 6.33 -64.19 By element: Atomic # 1 Polarization: 19.53 SS G_CDS: 1.03 Total: 20.56 kcal Atomic # 6 Polarization: -8.88 SS G_CDS: 4.38 Total: -4.50 kcal Atomic # 7 Polarization: -78.92 SS G_CDS: -1.29 Total: -80.21 kcal Atomic # 8 Polarization: -25.42 SS G_CDS: -0.05 Total: -25.46 kcal Atomic # 9 Polarization: -10.63 SS G_CDS: 1.56 Total: -9.07 kcal Atomic # 14 Polarization: 39.58 SS G_CDS: 1.88 Total: 41.46 kcal Atomic # 16 Polarization: -5.78 SS G_CDS: -1.19 Total: -6.98 kcal Total: -70.52 6.33 -64.19 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294790776.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.961 kcal (2) G-P(sol) polarization free energy of solvation -70.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds