Wall clock time and date at job start Tue Mar 31 2020 10:47:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35766 * 117.00464 * 2 1 4 4 N 1.32170 * 119.70787 * 359.97438 * 3 2 1 5 5 C 1.31997 * 121.69816 * 180.02562 * 4 3 2 6 6 C 1.38048 * 120.93908 * 0.02562 * 5 4 3 7 7 C 1.38785 * 119.33118 * 359.97438 * 6 5 4 8 8 C 1.38792 * 118.43983 * 359.97438 * 7 6 5 9 9 O 1.35995 * 120.49290 * 179.97438 * 8 7 6 10 10 S 1.52198 * 114.00225 * 90.00008 * 9 8 7 11 11 O 1.42096 * 104.27713 * 191.07435 * 10 9 8 12 12 O 1.42102 * 104.27885 * 318.92918 * 10 9 8 13 13 C 1.81398 * 104.44906 * 75.00032 * 10 9 8 14 14 C 1.53003 * 109.47072 * 179.97438 * 13 10 9 15 15 C 1.52992 * 109.47344 * 300.00349 * 14 13 10 16 16 C 1.53002 * 109.46837 * 60.00450 * 14 13 10 17 17 C 1.50705 * 109.47206 * 179.97438 * 14 13 10 18 18 H 1.08003 * 119.99720 * 0.02562 * 17 14 13 19 19 C 1.37875 * 119.99981 * 180.02562 * 17 14 13 20 20 N 1.31511 * 120.00308 * 359.97438 * 19 17 14 21 21 Si 1.86796 * 119.99980 * 180.02562 * 19 17 14 22 22 H 1.48504 * 109.47198 * 59.99497 * 21 19 17 23 23 H 1.48501 * 109.47594 * 179.97438 * 21 19 17 24 24 H 1.48508 * 109.47126 * 300.00100 * 21 19 17 25 25 H 1.08994 * 109.47061 * 300.00508 * 1 2 3 26 26 H 1.09003 * 109.46669 * 59.99948 * 1 2 3 27 27 H 1.08998 * 109.46918 * 180.02562 * 1 2 3 28 28 H 1.07997 * 119.52984 * 180.02562 * 5 4 3 29 29 H 1.07994 * 120.33662 * 179.97438 * 6 5 4 30 30 H 1.08002 * 120.77757 * 179.73365 * 7 6 5 31 31 H 1.09001 * 109.47388 * 300.00190 * 13 10 9 32 32 H 1.08997 * 109.47017 * 60.00491 * 13 10 9 33 33 H 1.08996 * 109.47453 * 59.99939 * 15 14 13 34 34 H 1.09003 * 109.47160 * 180.02562 * 15 14 13 35 35 H 1.09010 * 109.46957 * 299.99778 * 15 14 13 36 36 H 1.08999 * 109.47629 * 59.99561 * 16 14 13 37 37 H 1.09002 * 109.47125 * 180.02562 * 16 14 13 38 38 H 1.08996 * 109.46967 * 299.99453 * 16 14 13 39 39 H 0.97000 * 120.00471 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0455 1.2096 0.0000 4 7 1.3201 2.3145 -0.0005 5 6 1.8782 3.5106 -0.0010 6 6 3.2513 3.6531 -0.0016 7 6 4.0524 2.5198 -0.0011 8 6 3.4374 1.2756 0.0006 9 8 4.1821 0.1377 0.0006 10 16 4.5226 -0.3792 1.3910 11 8 5.4978 -1.3869 1.1611 12 8 4.8392 0.7911 2.1323 13 6 2.9770 -1.1145 1.9917 14 6 3.1926 -1.6771 3.3981 15 6 4.2846 -2.7479 3.3572 16 6 3.6198 -0.5486 4.3388 17 6 1.9083 -2.2874 3.8974 18 1 1.0266 -2.2755 3.2738 19 6 1.8589 -2.8608 5.1503 20 7 2.9327 -2.8757 5.9095 21 14 0.2673 -3.6178 5.7689 22 1 -0.1473 -4.7135 4.8562 23 1 0.4764 -4.1638 7.1340 24 1 -0.7928 -2.5785 5.8080 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.2517 4.3903 -0.0010 29 1 3.6976 4.6365 -0.0024 30 1 5.1291 2.6042 -0.0058 31 1 2.1988 -0.3517 2.0204 32 1 2.6728 -1.9187 1.3218 33 1 5.2133 -2.3061 2.9963 34 1 4.4379 -3.1490 4.3591 35 1 3.9801 -3.5519 2.6870 36 1 2.8419 0.2144 4.3679 37 1 3.7739 -0.9494 5.3406 38 1 4.5486 -0.1068 3.9779 39 1 2.8979 -3.2787 6.7910 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000295164188.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:47:10 Heat of formation + Delta-G solvation = -120.070593 kcal Electronic energy + Delta-G solvation = -26147.865204 eV Core-core repulsion = 22376.828073 eV Total energy + Delta-G solvation = -3771.037131 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.102 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.62852 -40.43516 -39.04554 -38.33957 -38.16662 -37.15434 -33.66456 -33.30803 -31.50593 -28.63360 -28.20822 -27.72946 -27.26777 -25.27835 -24.32368 -22.15587 -21.23235 -19.76322 -19.44844 -18.93389 -18.59242 -17.94274 -17.39256 -16.97793 -16.77858 -16.55370 -16.08878 -15.57078 -15.16123 -14.82584 -14.74901 -14.54361 -14.44848 -14.04670 -13.98333 -13.91161 -13.52784 -13.25557 -13.07421 -12.90212 -12.84417 -12.74086 -12.59578 -12.29962 -12.22786 -12.17952 -11.96624 -11.60512 -11.41467 -11.06065 -10.95115 -10.63096 -10.41881 -9.68309 -8.03357 -6.21637 -1.01242 -0.10768 0.03413 1.09698 1.44825 1.45601 1.52783 1.81329 2.43062 2.46873 2.56851 2.91435 3.17290 3.19399 3.45749 3.70678 3.87797 3.97820 4.03258 4.23982 4.39664 4.43681 4.55226 4.57327 4.75654 4.81559 4.83247 4.84478 4.94075 4.97960 5.05163 5.30685 5.33876 5.47991 5.63325 5.93914 5.98044 6.08313 6.32596 6.54308 6.81282 7.45948 8.96945 Molecular weight = 315.10amu Principal moments of inertia in cm(-1) A = 0.016422 B = 0.005677 C = 0.004821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1704.581412 B = 4930.712855 C = 5807.023014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.317 6.317 3 C 0.308 3.692 4 N -0.529 5.529 5 C 0.158 3.842 6 C -0.179 4.179 7 C -0.028 4.028 8 C -0.045 4.045 9 O -0.659 6.659 10 S 2.586 3.414 11 O -0.968 6.968 12 O -0.973 6.973 13 C -0.586 4.586 14 C 0.072 3.928 15 C -0.161 4.161 16 C -0.156 4.156 17 C -0.515 4.515 18 H 0.062 0.938 19 C 0.019 3.981 20 N -0.908 5.908 21 Si 0.955 3.045 22 H -0.272 1.272 23 H -0.286 1.286 24 H -0.271 1.271 25 H 0.063 0.937 26 H 0.077 0.923 27 H 0.116 0.884 28 H 0.220 0.780 29 H 0.199 0.801 30 H 0.168 0.832 31 H 0.129 0.871 32 H 0.134 0.866 33 H 0.030 0.970 34 H 0.077 0.923 35 H 0.039 0.961 36 H 0.037 0.963 37 H 0.075 0.925 38 H 0.033 0.967 39 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.182 14.265 -13.019 19.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.224 6.224 3 C 0.127 3.873 4 N -0.255 5.255 5 C 0.002 3.998 6 C -0.198 4.198 7 C -0.056 4.056 8 C -0.090 4.090 9 O -0.616 6.616 10 S 2.687 3.313 11 O -0.966 6.966 12 O -0.971 6.971 13 C -0.717 4.717 14 C 0.071 3.929 15 C -0.219 4.219 16 C -0.214 4.214 17 C -0.554 4.554 18 H 0.080 0.920 19 C -0.180 4.180 20 N -0.546 5.546 21 Si 0.781 3.219 22 H -0.198 1.198 23 H -0.212 1.212 24 H -0.196 1.196 25 H 0.082 0.918 26 H 0.096 0.904 27 H 0.134 0.866 28 H 0.236 0.764 29 H 0.216 0.784 30 H 0.186 0.814 31 H 0.147 0.853 32 H 0.153 0.847 33 H 0.048 0.952 34 H 0.095 0.905 35 H 0.058 0.942 36 H 0.056 0.944 37 H 0.094 0.906 38 H 0.052 0.948 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -4.116 13.903 -13.069 19.521 hybrid contribution -0.351 -1.136 0.699 1.379 sum -4.468 12.767 -12.371 18.330 Atomic orbital electron populations 1.23226 0.74710 1.05086 1.03286 1.86378 1.25551 1.23815 1.86640 1.20185 0.87599 0.87075 0.92447 1.67642 1.39248 0.98778 1.19814 1.23615 0.94199 0.94017 0.87934 1.22535 0.94034 1.00354 1.02881 1.22126 1.03481 0.89466 0.90486 1.18567 0.86991 0.84452 1.18959 1.85733 1.72541 1.46316 1.57035 1.05771 0.78134 0.74713 0.72646 1.93528 1.58737 1.61070 1.83237 1.93522 1.84211 1.47602 1.71800 1.30573 1.19048 1.12819 1.09216 1.17937 0.96178 0.92490 0.86336 1.22229 0.96473 0.99960 1.03249 1.22174 0.98168 0.97265 1.03784 1.21189 0.95725 1.37527 1.00974 0.91966 1.25660 0.99238 0.96240 0.96872 1.69921 1.29227 1.45120 1.10344 0.85661 0.80161 0.78820 0.77262 1.19765 1.21208 1.19625 0.91822 0.90428 0.86558 0.76373 0.78363 0.81416 0.85275 0.84733 0.95160 0.90469 0.94179 0.94378 0.90639 0.94809 0.92823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.70 10.38 113.37 1.18 1.88 16 2 O -0.32 -9.60 7.52 -77.17 -0.58 -10.18 16 3 C 0.31 9.12 6.66 84.91 0.57 9.68 16 4 N -0.53 -12.46 9.22 -308.56 -2.84 -15.30 16 5 C 0.16 2.41 11.17 84.62 0.95 3.36 16 6 C -0.18 -2.62 10.10 22.36 0.23 -2.40 16 7 C -0.03 -0.67 9.21 22.53 0.21 -0.46 16 8 C -0.04 -1.40 4.82 22.67 0.11 -1.29 16 9 O -0.66 -24.03 9.86 -60.53 -0.60 -24.62 16 10 S 2.59 107.66 4.20 -56.49 -0.24 107.42 16 11 O -0.97 -45.45 15.71 -118.57 -1.86 -47.31 16 12 O -0.97 -41.19 13.90 -118.57 -1.65 -42.84 16 13 C -0.59 -24.87 3.48 71.98 0.25 -24.62 16 14 C 0.07 3.63 0.52 -52.93 -0.03 3.60 16 15 C -0.16 -8.32 7.78 71.98 0.56 -7.76 16 16 C -0.16 -7.87 7.77 71.98 0.56 -7.31 16 17 C -0.52 -27.24 8.01 25.60 0.21 -27.03 16 18 H 0.06 3.16 7.74 -2.91 -0.02 3.14 16 19 C 0.02 1.03 5.15 84.65 0.44 1.47 16 20 N -0.91 -50.36 9.35 21.45 0.20 -50.16 16 21 Si 0.96 42.16 29.54 68.60 2.03 44.18 16 22 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 23 H -0.29 -12.55 7.11 99.48 0.71 -11.84 16 24 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 25 H 0.06 1.46 8.10 -2.39 -0.02 1.44 16 26 H 0.08 1.45 8.11 -2.39 -0.02 1.43 16 27 H 0.12 2.25 8.14 -2.39 -0.02 2.24 16 28 H 0.22 1.11 8.06 -2.91 -0.02 1.09 16 29 H 0.20 1.01 8.06 -2.91 -0.02 0.99 16 30 H 0.17 3.40 8.06 -2.91 -0.02 3.37 16 31 H 0.13 5.15 6.02 -2.39 -0.01 5.14 16 32 H 0.13 5.38 8.11 -2.39 -0.02 5.36 16 33 H 0.03 1.49 5.46 -2.39 -0.01 1.48 16 34 H 0.08 4.26 6.07 -2.39 -0.01 4.24 16 35 H 0.04 1.97 8.14 -2.38 -0.02 1.95 16 36 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 37 H 0.07 4.11 6.07 -2.39 -0.01 4.09 16 38 H 0.03 1.61 5.46 -2.39 -0.01 1.60 16 39 H 0.26 13.94 8.31 -92.71 -0.77 13.17 16 Total: -1.00 -71.69 323.75 0.74 -70.94 By element: Atomic # 1 Polarization: 17.69 SS G_CDS: 1.07 Total: 18.76 kcal Atomic # 6 Polarization: -56.11 SS G_CDS: 5.21 Total: -50.90 kcal Atomic # 7 Polarization: -62.82 SS G_CDS: -2.64 Total: -65.46 kcal Atomic # 8 Polarization: -120.26 SS G_CDS: -4.69 Total: -124.95 kcal Atomic # 14 Polarization: 42.16 SS G_CDS: 2.03 Total: 44.18 kcal Atomic # 16 Polarization: 107.66 SS G_CDS: -0.24 Total: 107.42 kcal Total: -71.69 0.74 -70.94 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295164188.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.128 kcal (2) G-P(sol) polarization free energy of solvation -71.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds