Wall clock time and date at job start Tue Mar 31 2020 11:14:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46504 * 109.46911 * 2 1 4 4 C 1.46504 * 119.99824 * 269.99882 * 3 2 1 5 5 C 1.50696 * 109.46828 * 270.00394 * 4 3 2 6 6 H 1.07997 * 120.00729 * 359.97438 * 5 4 3 7 7 C 1.37878 * 119.99836 * 180.02562 * 5 4 3 8 8 N 1.31519 * 120.00126 * 359.97438 * 7 5 4 9 9 Si 1.86805 * 120.00171 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47196 * 359.97438 * 9 7 5 11 11 H 1.48495 * 109.47238 * 120.00109 * 9 7 5 12 12 H 1.48504 * 109.47028 * 239.99972 * 9 7 5 13 13 C 1.34771 * 119.99891 * 90.00523 * 3 2 1 14 14 O 1.21284 * 120.00031 * 179.97438 * 13 3 2 15 15 C 1.50700 * 120.00081 * 359.97438 * 13 3 2 16 16 S 1.81407 * 109.47171 * 180.02562 * 15 13 3 17 17 C 1.76200 * 102.99726 * 179.97438 * 16 15 13 18 18 C 1.38867 * 120.07696 * 0.02562 * 17 16 15 19 19 C 1.38333 * 119.92390 * 179.97438 * 18 17 16 20 20 F 1.35102 * 119.96781 * 180.02562 * 19 18 17 21 21 C 1.38501 * 120.06397 * 0.02562 * 19 18 17 22 22 C 1.38290 * 120.14499 * 359.95681 * 21 19 18 23 23 C 1.38254 * 120.08029 * 0.04502 * 22 21 19 24 24 F 1.35103 * 120.03477 * 180.25773 * 23 22 21 25 25 H 1.09002 * 109.46966 * 300.00088 * 1 2 3 26 26 H 1.09003 * 109.46725 * 60.00060 * 1 2 3 27 27 H 1.08992 * 109.47076 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46966 * 239.99912 * 2 1 3 29 29 H 1.08996 * 109.46767 * 120.00372 * 2 1 3 30 30 H 1.08994 * 109.46815 * 30.00358 * 4 3 2 31 31 H 1.08995 * 109.46628 * 150.00387 * 4 3 2 32 32 H 0.96996 * 120.00192 * 179.97438 * 8 7 5 33 33 H 1.08997 * 109.47457 * 60.00156 * 15 13 3 34 34 H 1.09007 * 109.46911 * 299.99984 * 15 13 3 35 35 H 1.08007 * 120.03700 * 359.95552 * 18 17 16 36 36 H 1.07994 * 119.92551 * 180.02562 * 21 19 18 37 37 H 1.08001 * 119.96318 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2625 2.0719 -1.2688 5 6 3.6858 1.8350 -1.7038 6 1 4.3429 1.2309 -1.0958 7 6 4.1494 2.3904 -2.8775 8 7 3.3494 3.1265 -3.6177 9 14 5.9138 2.0974 -3.4164 10 1 6.6015 1.2422 -2.4159 11 1 5.9218 1.4189 -4.7373 12 1 6.6211 3.3988 -3.5242 13 6 2.2430 2.0165 1.1672 14 8 2.6477 3.1599 1.1672 15 6 1.9915 1.3063 2.4723 16 16 2.3839 2.4178 3.8511 17 6 2.0336 1.4307 5.2680 18 6 1.5738 0.1295 5.1132 19 6 1.3003 -0.6428 6.2278 20 9 0.8534 -1.9090 6.0783 21 6 1.4841 -0.1194 7.4968 22 6 1.9422 1.1759 7.6541 23 6 2.2174 1.9532 6.5443 24 9 2.6699 3.2167 6.6991 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 1.5817 1.6877 -2.0283 31 1 2.0956 3.1410 -1.1384 32 1 3.6757 3.5176 -4.4432 33 1 2.6213 0.4186 2.5302 34 1 0.9433 1.0125 2.5298 35 1 1.4296 -0.2788 4.1238 36 1 1.2702 -0.7245 8.3654 37 1 2.0849 1.5810 8.6450 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000298766985.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:14:19 Heat of formation + Delta-G solvation = -96.612770 kcal Electronic energy + Delta-G solvation = -23156.534156 eV Core-core repulsion = 19275.426717 eV Total energy + Delta-G solvation = -3881.107439 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.085 amu Computer time = 11.04 seconds Orbital eigenvalues (eV) -49.25536 -49.10901 -39.20112 -38.93233 -35.49031 -32.94453 -32.02196 -30.42234 -30.21537 -29.89023 -26.79015 -23.93368 -23.26762 -23.13323 -22.53234 -19.16975 -18.22083 -17.75648 -17.40619 -16.79539 -16.45036 -16.26810 -16.19088 -15.61128 -15.53706 -15.09714 -14.70954 -14.46397 -14.17863 -13.72756 -13.60773 -13.54456 -13.42795 -12.95600 -12.82925 -12.47507 -12.13055 -12.10072 -11.74640 -11.54189 -11.25779 -10.97586 -10.84996 -10.64049 -10.30128 -10.23545 -10.18927 -9.70107 -9.22426 -9.07523 -8.49115 -7.84978 -7.57209 -6.10152 -4.15302 0.53181 0.61057 1.12385 2.15356 2.93648 3.12313 3.27006 3.35208 3.38843 3.71740 3.83167 3.85794 4.23344 4.39817 4.49565 4.71774 4.76260 4.90095 4.98461 5.07092 5.24632 5.27354 5.39840 5.49285 5.53137 5.60786 5.63978 5.68821 5.90010 6.11265 6.36284 6.36582 6.90922 7.33188 7.40046 7.85297 8.14876 8.20148 8.73985 8.91831 9.50129 10.98065 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.018544 B = 0.003239 C = 0.002994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1509.538961 B = 8641.368686 C = 9350.153737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.103 3.897 3 N -0.588 5.588 4 C 0.247 3.753 5 C -0.529 4.529 6 H 0.058 0.942 7 C 0.062 3.938 8 N -0.893 5.893 9 Si 0.899 3.101 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.282 1.282 13 C 0.523 3.477 14 O -0.521 6.521 15 C -0.158 4.158 16 S 0.015 5.985 17 C -0.111 4.111 18 C -0.150 4.150 19 C 0.113 3.887 20 F -0.134 7.134 21 C -0.140 4.140 22 C -0.103 4.103 23 C 0.103 3.897 24 F -0.124 7.124 25 H 0.049 0.951 26 H 0.064 0.936 27 H 0.062 0.938 28 H 0.087 0.913 29 H 0.063 0.937 30 H 0.035 0.965 31 H 0.045 0.955 32 H 0.264 0.736 33 H 0.115 0.885 34 H 0.114 0.886 35 H 0.145 0.855 36 H 0.146 0.854 37 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.797 -9.499 20.268 23.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.021 4.021 3 N -0.320 5.320 4 C 0.128 3.872 5 C -0.568 4.568 6 H 0.077 0.923 7 C -0.140 4.140 8 N -0.532 5.532 9 Si 0.726 3.274 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.208 1.208 13 C 0.307 3.693 14 O -0.398 6.398 15 C -0.310 4.310 16 S 0.262 5.738 17 C -0.226 4.226 18 C -0.176 4.176 19 C 0.091 3.909 20 F -0.112 7.112 21 C -0.163 4.163 22 C -0.124 4.124 23 C 0.076 3.924 24 F -0.102 7.102 25 H 0.068 0.932 26 H 0.083 0.917 27 H 0.081 0.919 28 H 0.106 0.894 29 H 0.081 0.919 30 H 0.053 0.947 31 H 0.063 0.937 32 H 0.073 0.927 33 H 0.133 0.867 34 H 0.132 0.868 35 H 0.163 0.837 36 H 0.164 0.836 37 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -6.162 -7.579 19.805 22.083 hybrid contribution 0.424 -1.697 -0.345 1.783 sum -5.739 -9.276 19.461 22.309 Atomic orbital electron populations 1.22236 0.96516 1.01667 1.02477 1.21491 0.93704 0.83976 1.02926 1.48201 1.63238 1.13327 1.07247 1.19354 0.96553 0.93708 0.77558 1.21444 0.96784 1.32162 1.06397 0.92337 1.24936 0.97951 0.94809 0.96340 1.69937 1.35649 1.33276 1.14353 0.86430 0.84485 0.78137 0.78308 1.19776 1.20929 1.20792 1.19196 0.79504 0.86760 0.83834 1.90741 1.45263 1.17415 1.86353 1.24145 1.06720 1.03266 0.96837 1.86715 1.80273 1.15512 0.91282 1.22253 1.03695 0.98164 0.98442 1.21018 1.04173 0.92970 0.99474 1.17509 0.99461 0.79951 0.93939 1.91530 1.86634 1.36492 1.96563 1.20949 1.02980 0.96039 0.96304 1.20908 0.99672 0.93490 0.98322 1.17028 1.02291 0.80996 0.92056 1.91556 1.86287 1.36227 1.96137 0.93153 0.91732 0.91911 0.89445 0.91866 0.94655 0.93665 0.92677 0.86726 0.86827 0.83733 0.83612 0.83260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.09 10.24 37.16 0.38 -1.71 16 2 C 0.10 1.52 5.93 -4.04 -0.02 1.50 16 3 N -0.59 -11.77 2.46 -175.06 -0.43 -12.20 16 4 C 0.25 6.24 5.16 -5.19 -0.03 6.22 16 5 C -0.53 -14.67 9.39 -34.44 -0.32 -15.00 16 6 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 7 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 8 N -0.89 -26.17 13.29 55.43 0.74 -25.43 16 9 Si 0.90 21.63 29.54 -169.99 -5.02 16.61 16 10 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 12 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 13 C 0.52 10.42 7.69 -10.99 -0.08 10.34 16 14 O -0.52 -12.81 15.44 5.55 0.09 -12.72 16 15 C -0.16 -2.23 3.37 36.01 0.12 -2.11 16 16 S 0.01 0.22 20.66 -107.50 -2.22 -2.00 16 17 C -0.11 -1.34 6.11 -39.02 -0.24 -1.58 16 18 C -0.15 -1.56 9.34 -39.31 -0.37 -1.93 16 19 C 0.11 1.07 7.29 -39.45 -0.29 0.78 16 20 F -0.13 -1.32 17.27 2.25 0.04 -1.28 16 21 C -0.14 -1.09 10.02 -39.47 -0.40 -1.48 16 22 C -0.10 -0.85 10.02 -39.56 -0.40 -1.25 16 23 C 0.10 1.16 7.28 -39.24 -0.29 0.87 16 24 F -0.12 -1.57 16.76 2.25 0.04 -1.54 16 25 H 0.05 0.58 7.22 -51.93 -0.37 0.20 16 26 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 27 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.09 1.35 8.07 -51.93 -0.42 0.93 16 29 H 0.06 0.74 6.44 -51.93 -0.33 0.41 16 30 H 0.04 0.90 8.07 -51.93 -0.42 0.48 16 31 H 0.05 1.30 7.42 -51.93 -0.39 0.91 16 32 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 33 H 0.11 1.37 7.01 -51.93 -0.36 1.01 16 34 H 0.11 1.29 6.79 -51.92 -0.35 0.94 16 35 H 0.15 1.32 5.88 -52.48 -0.31 1.01 16 36 H 0.15 0.74 8.06 -52.49 -0.42 0.32 16 37 H 0.15 0.82 8.06 -52.49 -0.42 0.40 16 LS Contribution 339.45 15.07 5.12 5.12 Total: -1.00 -32.60 339.45 -7.88 -40.47 By element: Atomic # 1 Polarization: 0.87 SS G_CDS: -4.19 Total: -3.33 kcal Atomic # 6 Polarization: -1.68 SS G_CDS: -2.02 Total: -3.70 kcal Atomic # 7 Polarization: -37.94 SS G_CDS: 0.31 Total: -37.63 kcal Atomic # 8 Polarization: -12.81 SS G_CDS: 0.09 Total: -12.72 kcal Atomic # 9 Polarization: -2.89 SS G_CDS: 0.08 Total: -2.82 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Atomic # 16 Polarization: 0.22 SS G_CDS: -2.22 Total: -2.00 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -32.60 -7.88 -40.47 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298766985.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.140 kcal (2) G-P(sol) polarization free energy of solvation -32.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 11.04 seconds