Wall clock time and date at job start Tue Mar 31 2020 11:14:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46504 * 109.46911 * 2 1 4 4 C 1.46504 * 119.99824 * 269.99882 * 3 2 1 5 5 C 1.50696 * 109.46828 * 270.00394 * 4 3 2 6 6 H 1.07997 * 120.00729 * 359.97438 * 5 4 3 7 7 C 1.37878 * 119.99836 * 180.02562 * 5 4 3 8 8 N 1.31519 * 120.00126 * 359.97438 * 7 5 4 9 9 Si 1.86805 * 120.00171 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47196 * 359.97438 * 9 7 5 11 11 H 1.48495 * 109.47238 * 120.00109 * 9 7 5 12 12 H 1.48504 * 109.47028 * 239.99972 * 9 7 5 13 13 C 1.34771 * 119.99891 * 90.00523 * 3 2 1 14 14 O 1.21284 * 120.00031 * 179.97438 * 13 3 2 15 15 C 1.50700 * 120.00081 * 359.97438 * 13 3 2 16 16 S 1.81407 * 109.47171 * 180.02562 * 15 13 3 17 17 C 1.76200 * 102.99726 * 179.97438 * 16 15 13 18 18 C 1.38867 * 120.07696 * 0.02562 * 17 16 15 19 19 C 1.38333 * 119.92390 * 179.97438 * 18 17 16 20 20 F 1.35102 * 119.96781 * 180.02562 * 19 18 17 21 21 C 1.38501 * 120.06397 * 0.02562 * 19 18 17 22 22 C 1.38290 * 120.14499 * 359.95681 * 21 19 18 23 23 C 1.38254 * 120.08029 * 0.04502 * 22 21 19 24 24 F 1.35103 * 120.03477 * 180.25773 * 23 22 21 25 25 H 1.09002 * 109.46966 * 300.00088 * 1 2 3 26 26 H 1.09003 * 109.46725 * 60.00060 * 1 2 3 27 27 H 1.08992 * 109.47076 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46966 * 239.99912 * 2 1 3 29 29 H 1.08996 * 109.46767 * 120.00372 * 2 1 3 30 30 H 1.08994 * 109.46815 * 30.00358 * 4 3 2 31 31 H 1.08995 * 109.46628 * 150.00387 * 4 3 2 32 32 H 0.96996 * 120.00192 * 179.97438 * 8 7 5 33 33 H 1.08997 * 109.47457 * 60.00156 * 15 13 3 34 34 H 1.09007 * 109.46911 * 299.99984 * 15 13 3 35 35 H 1.08007 * 120.03700 * 359.95552 * 18 17 16 36 36 H 1.07994 * 119.92551 * 180.02562 * 21 19 18 37 37 H 1.08001 * 119.96318 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2625 2.0719 -1.2688 5 6 3.6858 1.8350 -1.7038 6 1 4.3429 1.2309 -1.0958 7 6 4.1494 2.3904 -2.8775 8 7 3.3494 3.1265 -3.6177 9 14 5.9138 2.0974 -3.4164 10 1 6.6015 1.2422 -2.4159 11 1 5.9218 1.4189 -4.7373 12 1 6.6211 3.3988 -3.5242 13 6 2.2430 2.0165 1.1672 14 8 2.6477 3.1599 1.1672 15 6 1.9915 1.3063 2.4723 16 16 2.3839 2.4178 3.8511 17 6 2.0336 1.4307 5.2680 18 6 1.5738 0.1295 5.1132 19 6 1.3003 -0.6428 6.2278 20 9 0.8534 -1.9090 6.0783 21 6 1.4841 -0.1194 7.4968 22 6 1.9422 1.1759 7.6541 23 6 2.2174 1.9532 6.5443 24 9 2.6699 3.2167 6.6991 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 1.5817 1.6877 -2.0283 31 1 2.0956 3.1410 -1.1384 32 1 3.6757 3.5176 -4.4432 33 1 2.6213 0.4186 2.5302 34 1 0.9433 1.0125 2.5298 35 1 1.4296 -0.2788 4.1238 36 1 1.2702 -0.7245 8.3654 37 1 2.0849 1.5810 8.6450 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000298766985.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:14:14 Heat of formation + Delta-G solvation = -115.443673 kcal Electronic energy + Delta-G solvation = -23157.350726 eV Core-core repulsion = 19275.426717 eV Total energy + Delta-G solvation = -3881.924008 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.085 amu Computer time = -1.05 seconds Orbital eigenvalues (eV) -49.99618 -49.97703 -40.79425 -39.67806 -37.08992 -34.98091 -32.85612 -31.86664 -31.23378 -30.90149 -28.65067 -25.01375 -24.66154 -24.27651 -23.64401 -20.44927 -19.32949 -18.67069 -18.55739 -18.22956 -18.08903 -17.41025 -17.01711 -16.92823 -16.61597 -16.40091 -16.11419 -15.42464 -15.17725 -14.91331 -14.82722 -14.66128 -14.42523 -14.26170 -13.90909 -13.70112 -13.56985 -13.30289 -13.19860 -13.06128 -12.71468 -12.56928 -12.25236 -12.19794 -11.96158 -11.71699 -11.33222 -11.00223 -10.86020 -10.66701 -9.84196 -9.55246 -8.63975 -8.24957 -6.39476 -0.22198 -0.11064 0.06060 1.13791 1.35361 1.38234 1.49313 1.61483 2.19845 2.21870 2.39508 3.05311 3.06789 3.13501 3.42453 3.54306 3.83230 3.87465 3.93522 4.04294 4.17576 4.32312 4.38128 4.59152 4.69547 4.85575 4.88508 4.92443 4.94677 5.00059 5.02236 5.18683 5.36599 5.53073 5.66115 5.78125 6.02417 6.58626 6.70821 7.19152 7.34872 8.82564 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.018544 B = 0.003239 C = 0.002994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1509.538961 B = 8641.368686 C = 9350.153737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.095 3.905 3 N -0.593 5.593 4 C 0.263 3.737 5 C -0.543 4.543 6 H 0.055 0.945 7 C 0.008 3.992 8 N -0.928 5.928 9 Si 0.967 3.033 10 H -0.266 1.266 11 H -0.268 1.268 12 H -0.283 1.283 13 C 0.513 3.487 14 O -0.580 6.580 15 C -0.132 4.132 16 S -0.058 6.058 17 C -0.117 4.117 18 C -0.151 4.151 19 C 0.107 3.893 20 F -0.134 7.134 21 C -0.122 4.122 22 C -0.092 4.092 23 C 0.082 3.918 24 F -0.139 7.139 25 H 0.060 0.940 26 H 0.040 0.960 27 H 0.098 0.902 28 H 0.077 0.923 29 H 0.103 0.897 30 H 0.027 0.973 31 H -0.002 1.002 32 H 0.267 0.733 33 H 0.143 0.857 34 H 0.147 0.853 35 H 0.157 0.843 36 H 0.181 0.819 37 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.987 -12.603 22.631 26.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.027 4.027 3 N -0.324 5.324 4 C 0.142 3.858 5 C -0.582 4.582 6 H 0.073 0.927 7 C -0.191 4.191 8 N -0.567 5.567 9 Si 0.791 3.209 10 H -0.191 1.191 11 H -0.193 1.193 12 H -0.209 1.209 13 C 0.300 3.700 14 O -0.461 6.461 15 C -0.282 4.282 16 S 0.187 5.813 17 C -0.231 4.231 18 C -0.176 4.176 19 C 0.086 3.914 20 F -0.113 7.113 21 C -0.143 4.143 22 C -0.112 4.112 23 C 0.057 3.943 24 F -0.118 7.118 25 H 0.079 0.921 26 H 0.059 0.941 27 H 0.117 0.883 28 H 0.096 0.904 29 H 0.121 0.879 30 H 0.045 0.955 31 H 0.016 0.984 32 H 0.076 0.924 33 H 0.161 0.839 34 H 0.165 0.835 35 H 0.175 0.825 36 H 0.198 0.802 37 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -6.383 -10.753 22.200 25.480 hybrid contribution 0.414 -0.791 -0.957 1.309 sum -5.969 -11.544 21.243 24.903 Atomic orbital electron populations 1.22182 0.94352 1.03771 1.01850 1.21864 0.95477 0.80945 1.04430 1.48186 1.63269 1.15246 1.05700 1.18763 0.95500 0.91590 0.79970 1.21731 0.97820 1.32089 1.06552 0.92697 1.25848 1.02340 0.94446 0.96460 1.70053 1.37688 1.34137 1.14854 0.85376 0.79046 0.77987 0.78450 1.19067 1.19340 1.20918 1.20092 0.78085 0.86329 0.85499 1.90709 1.47676 1.20198 1.87478 1.23911 1.09216 1.02497 0.92585 1.86978 1.81995 1.18277 0.94037 1.22012 1.05810 0.98467 0.96812 1.21147 1.03566 0.92224 1.00649 1.17632 0.99546 0.79878 0.94345 1.91538 1.86639 1.36468 1.96606 1.21363 1.00400 0.95745 0.96803 1.21246 0.98144 0.93208 0.98632 1.17461 1.03116 0.80921 0.92846 1.91518 1.86660 1.37377 1.96217 0.92096 0.94117 0.88325 0.90405 0.87887 0.95460 0.98414 0.92380 0.83924 0.83538 0.82527 0.80187 0.80189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.65 10.24 71.98 0.74 -2.91 16 2 C 0.09 2.64 5.93 86.38 0.51 3.15 16 3 N -0.59 -24.12 2.46 -826.15 -2.03 -26.15 16 4 C 0.26 13.97 5.16 85.63 0.44 14.41 16 5 C -0.54 -31.04 9.39 25.60 0.24 -30.80 16 6 H 0.05 3.10 7.81 -2.91 -0.02 3.08 16 7 C 0.01 0.47 5.46 84.65 0.46 0.93 16 8 N -0.93 -56.00 13.29 21.45 0.28 -55.72 16 9 Si 0.97 44.89 29.54 68.60 2.03 46.91 16 10 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 11 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 12 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 13 C 0.51 20.85 7.69 87.66 0.67 21.53 16 14 O -0.58 -30.17 15.44 -3.04 -0.05 -30.21 16 15 C -0.13 -3.54 3.37 71.24 0.24 -3.30 16 16 S -0.06 -1.78 20.66 -56.49 -1.17 -2.95 16 17 C -0.12 -2.66 6.11 22.64 0.14 -2.52 16 18 C -0.15 -2.70 9.34 22.44 0.21 -2.49 16 19 C 0.11 1.63 7.29 22.36 0.16 1.80 16 20 F -0.13 -2.13 17.27 44.97 0.78 -1.36 16 21 C -0.12 -1.35 10.02 22.34 0.22 -1.12 16 22 C -0.09 -1.20 10.02 22.29 0.22 -0.97 16 23 C 0.08 1.74 7.28 22.49 0.16 1.90 16 24 F -0.14 -3.53 16.76 44.97 0.75 -2.78 16 25 H 0.06 1.23 7.22 -2.39 -0.02 1.22 16 26 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 27 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 28 H 0.08 2.32 8.07 -2.39 -0.02 2.30 16 29 H 0.10 2.05 6.44 -2.39 -0.02 2.03 16 30 H 0.03 1.47 8.07 -2.39 -0.02 1.45 16 31 H 0.00 -0.14 7.42 -2.39 -0.02 -0.16 16 32 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 33 H 0.14 3.00 7.01 -2.39 -0.02 2.99 16 34 H 0.15 2.92 6.79 -2.39 -0.02 2.91 16 35 H 0.16 2.29 5.88 -2.91 -0.02 2.27 16 36 H 0.18 0.80 8.06 -2.91 -0.02 0.77 16 37 H 0.18 1.20 8.06 -2.91 -0.02 1.18 16 Total: -1.00 -76.55 339.45 6.13 -70.42 By element: Atomic # 1 Polarization: 1.12 SS G_CDS: 1.10 Total: 2.22 kcal Atomic # 6 Polarization: -4.83 SS G_CDS: 4.43 Total: -0.40 kcal Atomic # 7 Polarization: -80.12 SS G_CDS: -1.74 Total: -81.87 kcal Atomic # 8 Polarization: -30.17 SS G_CDS: -0.05 Total: -30.21 kcal Atomic # 9 Polarization: -5.66 SS G_CDS: 1.53 Total: -4.13 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.91 kcal Atomic # 16 Polarization: -1.78 SS G_CDS: -1.17 Total: -2.95 kcal Total: -76.55 6.13 -70.42 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298766985.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.020 kcal (2) G-P(sol) polarization free energy of solvation -76.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -1.05 seconds