Wall clock time and date at job start Tue Mar 31 2020 11:19:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46500 * 119.99979 * 2 1 4 4 C 1.50703 * 109.46754 * 270.00091 * 3 2 1 5 5 H 1.08004 * 120.00199 * 359.97438 * 4 3 2 6 6 C 1.37880 * 120.00048 * 180.02562 * 4 3 2 7 7 N 1.31518 * 119.99791 * 359.97438 * 6 4 3 8 8 Si 1.86800 * 120.00374 * 180.02562 * 6 4 3 9 9 H 1.48499 * 109.47132 * 59.99239 * 8 6 4 10 10 H 1.48492 * 109.47058 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.46728 * 299.99773 * 8 6 4 12 12 C 1.38550 * 120.00251 * 179.97438 * 2 1 3 13 13 N 1.28218 * 124.90036 * 0.02562 * 12 2 1 14 14 N 1.38844 * 116.65594 * 179.97438 * 13 12 2 15 15 C 1.38331 * 139.63976 * 180.34742 * 14 13 12 16 16 C 1.35721 * 107.04442 * 180.02562 * 15 14 13 17 17 C 1.48334 * 126.01217 * 179.88556 * 16 15 14 18 18 C 1.39805 * 120.53600 * 179.71606 * 17 16 15 19 19 C 1.38397 * 118.30585 * 180.02562 * 18 17 16 20 20 C 1.38324 * 119.29246 * 0.02562 * 19 18 17 21 21 N 1.31889 * 121.03207 * 359.97438 * 20 19 18 22 22 C 1.31739 * 121.85750 * 0.02562 * 21 20 19 23 23 N 1.34536 * 107.96888 * 359.62156 * 16 15 14 24 24 C 1.32274 * 109.01601 * 0.23892 * 23 16 15 25 25 S 1.75745 * 124.90197 * 179.97438 * 12 2 1 26 26 H 1.09002 * 109.47437 * 270.00024 * 1 2 3 27 27 H 1.08994 * 109.47788 * 30.00059 * 1 2 3 28 28 H 1.09006 * 109.47299 * 150.00615 * 1 2 3 29 29 H 1.09000 * 109.47235 * 29.99770 * 3 2 1 30 30 H 1.08997 * 109.47490 * 150.00248 * 3 2 1 31 31 H 0.97001 * 119.99793 * 180.02562 * 7 6 4 32 32 H 1.07995 * 126.47845 * 359.91851 * 15 14 13 33 33 H 1.07991 * 120.84462 * 359.74634 * 18 17 16 34 34 H 1.08008 * 120.35808 * 179.97438 * 19 18 17 35 35 H 1.07999 * 119.48189 * 180.02562 * 20 19 18 36 36 H 1.08002 * 119.70646 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4486 1.7037 -1.4209 5 1 2.0980 1.0957 -2.2418 6 6 3.1268 2.8774 -1.6729 7 7 3.5541 3.6176 -0.6733 8 14 3.4375 3.4170 -3.4341 9 1 2.1396 3.5953 -4.1334 10 1 4.1800 4.7029 -3.4341 11 1 4.2392 2.3819 -4.1348 12 6 2.1578 -1.1998 0.0005 13 7 1.6139 -2.3610 0.0006 14 7 2.4734 -3.4514 0.0006 15 6 2.4224 -4.8337 -0.0048 16 6 3.7045 -5.2791 0.0002 17 6 4.1345 -6.6988 -0.0004 18 6 5.4929 -7.0295 -0.0008 19 6 5.8423 -8.3686 -0.0019 20 6 4.8459 -9.3280 -0.0032 21 7 3.5723 -8.9855 -0.0028 22 6 3.1914 -7.7244 -0.0017 23 7 4.5165 -4.2065 0.0000 24 6 3.7796 -3.1080 0.0002 25 16 3.9088 -1.3499 0.0000 26 1 -0.3634 0.0000 1.0277 27 1 -0.3634 0.8899 -0.5138 28 1 -0.3634 -0.8901 -0.5138 29 1 1.6084 2.0284 0.5138 30 1 3.1499 1.1385 0.5138 31 1 4.0310 4.4435 -0.8506 32 1 1.5310 -5.4433 -0.0100 33 1 6.2502 -6.2596 -0.0048 34 1 6.8819 -8.6615 -0.0027 35 1 5.1151 -10.3739 -0.0036 36 1 2.1386 -7.4833 -0.0018 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000302076368.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:33 Heat of formation + Delta-G solvation = 170.102146 kcal Electronic energy + Delta-G solvation = -22083.448209 eV Core-core repulsion = 18696.888334 eV Total energy + Delta-G solvation = -3386.559875 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 315.085 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.14011 -40.01243 -38.08208 -35.76747 -33.08532 -32.65154 -31.89446 -30.62592 -28.47890 -28.16199 -26.18522 -24.09268 -23.98784 -23.36445 -22.04105 -20.65911 -19.74135 -18.78107 -17.21103 -16.91338 -16.43841 -16.18532 -15.97881 -15.47169 -15.20911 -14.67352 -14.44209 -14.27808 -13.92308 -13.72320 -13.57364 -13.10386 -12.47882 -12.35636 -12.28086 -11.99755 -11.74612 -11.55192 -11.20803 -10.91654 -10.61780 -10.47041 -10.32963 -10.23629 -9.91821 -9.77840 -9.66393 -9.60401 -8.77494 -8.62673 -7.78456 -7.49099 -6.37978 -4.49047 0.72670 0.83029 1.17283 1.59874 1.68966 1.97182 2.39532 2.95460 3.15023 3.20590 3.23280 3.64174 3.88511 4.17935 4.24002 4.35368 4.60709 4.77627 4.87847 4.94394 4.96298 5.24640 5.39886 5.52693 5.56626 5.71399 5.75256 5.98209 6.00876 6.06641 6.17507 6.39069 6.50696 6.61661 6.76650 7.15370 7.48163 7.55837 7.71224 7.72299 7.83234 8.00278 8.56972 9.20371 10.67973 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.025054 B = 0.002896 C = 0.002732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.333921 B = 9665.645764 C =10246.713766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.540 5.540 3 C 0.246 3.754 4 C -0.551 4.551 5 H 0.065 0.935 6 C 0.071 3.929 7 N -0.887 5.887 8 Si 0.902 3.098 9 H -0.274 1.274 10 H -0.283 1.283 11 H -0.272 1.272 12 C 0.361 3.639 13 N -0.370 5.370 14 N -0.275 5.275 15 C 0.009 3.991 16 C 0.054 3.946 17 C -0.036 4.036 18 C -0.053 4.053 19 C -0.170 4.170 20 C 0.088 3.912 21 N -0.482 5.482 22 C 0.106 3.894 23 N -0.440 5.440 24 C 0.097 3.903 25 S 0.195 5.805 26 H 0.052 0.948 27 H 0.083 0.917 28 H 0.068 0.932 29 H 0.056 0.944 30 H 0.040 0.960 31 H 0.270 0.730 32 H 0.184 0.816 33 H 0.143 0.857 34 H 0.136 0.864 35 H 0.154 0.846 36 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.179 -15.507 2.629 15.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.256 5.256 3 C 0.127 3.873 4 C -0.590 4.590 5 H 0.084 0.916 6 C -0.134 4.134 7 N -0.524 5.524 8 Si 0.728 3.272 9 H -0.200 1.200 10 H -0.209 1.209 11 H -0.197 1.197 12 C -0.023 4.023 13 N -0.206 5.206 14 N -0.044 5.044 15 C -0.131 4.131 16 C -0.081 4.081 17 C -0.040 4.040 18 C -0.080 4.080 19 C -0.190 4.190 20 C -0.069 4.069 21 N -0.190 5.190 22 C -0.052 4.052 23 N -0.164 5.164 24 C -0.274 4.274 25 S 0.429 5.571 26 H 0.071 0.929 27 H 0.102 0.898 28 H 0.087 0.913 29 H 0.074 0.926 30 H 0.058 0.942 31 H 0.080 0.920 32 H 0.201 0.799 33 H 0.161 0.839 34 H 0.154 0.846 35 H 0.171 0.829 36 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 0.099 -15.248 2.690 15.484 hybrid contribution -0.351 0.587 -0.970 1.187 sum -0.252 -14.661 1.720 14.763 Atomic orbital electron populations 1.21738 0.78075 1.03482 1.01354 1.46873 1.06021 1.00819 1.71880 1.19776 0.91957 0.76909 0.98664 1.21373 1.38459 1.07567 0.91564 0.91648 1.24927 0.94626 0.95840 0.98019 1.69894 1.37034 1.14303 1.31184 0.86479 0.78716 0.78145 0.83824 1.19954 1.20880 1.19731 1.24381 0.94158 0.90194 0.93589 1.74239 1.13772 0.91408 1.41164 1.47203 1.03365 1.05176 1.48701 1.22286 0.99813 0.78240 1.12808 1.18660 0.88441 0.91626 1.09328 1.18753 0.94309 0.89650 1.01243 1.21703 0.95712 0.96631 0.93942 1.22107 1.01222 0.93460 1.02235 1.22763 0.88078 1.00067 0.95991 1.67656 1.19422 1.19727 1.12215 1.22744 0.99682 0.87051 0.95752 1.70451 1.30895 0.94206 1.20855 1.26934 0.84905 1.01602 1.13915 1.86141 0.99896 0.87045 1.84003 0.92929 0.89824 0.91313 0.92577 0.94215 0.92016 0.79899 0.83919 0.84634 0.82854 0.82589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.51 10.55 59.84 0.63 2.14 16 2 N -0.54 -10.26 2.96 -184.20 -0.55 -10.80 16 3 C 0.25 5.35 5.15 -5.19 -0.03 5.32 16 4 C -0.55 -13.40 9.39 -34.44 -0.32 -13.72 16 5 H 0.07 1.62 7.81 -52.48 -0.41 1.21 16 6 C 0.07 1.76 5.46 -17.82 -0.10 1.67 16 7 N -0.89 -23.15 13.29 55.43 0.74 -22.41 16 8 Si 0.90 19.70 29.54 -169.99 -5.02 14.68 16 9 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 10 H -0.28 -6.15 7.11 56.52 0.40 -5.74 16 11 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 12 C 0.36 6.96 7.92 -88.92 -0.70 6.26 16 13 N -0.37 -7.02 11.22 30.48 0.34 -6.68 16 14 N -0.27 -5.06 4.38 -12.23 -0.05 -5.11 16 15 C 0.01 0.13 11.44 -15.52 -0.18 -0.05 16 16 C 0.05 0.84 6.86 -83.43 -0.57 0.27 16 17 C -0.04 -0.47 5.89 -104.75 -0.62 -1.09 16 18 C -0.05 -0.63 9.83 -38.94 -0.38 -1.02 16 19 C -0.17 -1.61 10.10 -39.49 -0.40 -2.01 16 20 C 0.09 0.86 11.17 -17.50 -0.20 0.66 16 21 N -0.48 -5.70 10.35 -12.96 -0.13 -5.83 16 22 C 0.11 1.24 10.73 -17.18 -0.18 1.05 16 23 N -0.44 -8.04 11.08 -10.08 -0.11 -8.15 16 24 C 0.10 1.84 8.98 -88.87 -0.80 1.04 16 25 S 0.20 3.69 21.90 -107.50 -2.35 1.34 16 26 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 27 H 0.08 1.23 8.07 -51.93 -0.42 0.81 16 28 H 0.07 1.02 7.61 -51.93 -0.40 0.62 16 29 H 0.06 1.25 8.07 -51.93 -0.42 0.83 16 30 H 0.04 0.91 7.06 -51.93 -0.37 0.55 16 31 H 0.27 6.73 8.31 -40.82 -0.34 6.39 16 32 H 0.18 2.07 7.29 -52.49 -0.38 1.69 16 33 H 0.14 1.70 7.94 -52.49 -0.42 1.28 16 34 H 0.14 0.89 8.06 -52.48 -0.42 0.46 16 35 H 0.15 1.02 8.06 -52.49 -0.42 0.60 16 36 H 0.16 1.45 7.02 -52.49 -0.37 1.09 16 LS Contribution 332.93 15.07 5.02 5.02 Total: -1.00 -28.90 332.93 -9.55 -38.45 By element: Atomic # 1 Polarization: 2.55 SS G_CDS: -3.58 Total: -1.03 kcal Atomic # 6 Polarization: 4.38 SS G_CDS: -3.85 Total: 0.54 kcal Atomic # 7 Polarization: -59.22 SS G_CDS: 0.23 Total: -58.99 kcal Atomic # 14 Polarization: 19.70 SS G_CDS: -5.02 Total: 14.68 kcal Atomic # 16 Polarization: 3.69 SS G_CDS: -2.35 Total: 1.34 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -28.90 -9.55 -38.45 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000302076368.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 208.555 kcal (2) G-P(sol) polarization free energy of solvation -28.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 179.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.453 kcal (6) G-S(sol) free energy of system = (1) + (5) 170.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds