Wall clock time and date at job start Tue Mar 31 2020 11:09:31
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53005 * 1
3 3 H 1.09000 * 109.46788 * 2 1
4 4 C 1.50700 * 109.46707 * 119.99596 * 2 1 3
5 5 H 1.08004 * 119.99454 * 120.00544 * 4 2 1
6 6 C 1.37875 * 120.00488 * 300.00133 * 4 2 1
7 7 N 1.31519 * 119.99718 * 359.97438 * 6 4 2
8 8 Si 1.86798 * 120.00085 * 180.02562 * 6 4 2
9 9 H 1.48497 * 109.47265 * 359.97438 * 8 6 4
10 10 H 1.48498 * 109.47462 * 119.99912 * 8 6 4
11 11 H 1.48503 * 109.46994 * 239.99714 * 8 6 4
12 12 N 1.46500 * 109.47185 * 239.99706 * 2 1 3
13 13 C 1.38543 * 119.99478 * 85.00125 * 12 2 1
14 14 N 1.28228 * 124.89829 * 180.02562 * 13 12 2
15 15 N 1.38844 * 116.65659 * 179.97438 * 14 13 12
16 16 C 1.38330 * 139.63974 * 180.32662 * 15 14 13
17 17 C 1.35721 * 107.04468 * 180.02562 * 16 15 14
18 18 C 1.48334 * 126.01217 * 179.90722 * 17 16 15
19 19 C 1.39805 * 120.53600 * 179.71606 * 18 17 16
20 20 C 1.38397 * 118.30585 * 180.02562 * 19 18 17
21 21 C 1.38325 * 119.29247 * 0.02562 * 20 19 18
22 22 N 1.31889 * 121.03210 * 359.97438 * 21 20 19
23 23 C 1.31739 * 121.85725 * 359.97438 * 22 21 20
24 24 N 1.34536 * 107.96888 * 359.64321 * 17 16 15
25 25 C 1.32274 * 109.01588 * 0.22517 * 24 17 16
26 26 S 1.75744 * 124.90789 * 359.97438 * 13 12 2
27 27 H 1.09000 * 109.46830 * 60.00099 * 1 2 3
28 28 H 1.08991 * 109.47231 * 180.02562 * 1 2 3
29 29 H 1.09000 * 109.47147 * 300.00564 * 1 2 3
30 30 H 0.96994 * 119.99810 * 180.02562 * 7 6 4
31 31 H 0.96996 * 119.99996 * 265.00541 * 12 2 1
32 32 H 1.07995 * 126.47828 * 359.95249 * 16 15 14
33 33 H 1.07991 * 120.84462 * 359.74634 * 19 18 17
34 34 H 1.08008 * 120.35808 * 179.97438 * 20 19 18
35 35 H 1.08000 * 119.48230 * 179.97438 * 21 20 19
36 36 H 1.08002 * 119.70114 * 180.02562 * 23 22 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0323 -0.7103 1.2305
5 1 2.6533 -1.5884 1.1314
6 6 1.6992 -0.2393 2.4828
7 7 0.9435 0.8303 2.6034
8 14 2.3224 -1.1195 4.0080
9 1 3.1472 -2.2863 3.6039
10 1 3.1471 -0.1857 4.8162
11 1 1.1676 -1.5864 4.8166
12 7 2.0184 -0.6907 -1.1961
13 6 2.1507 0.0005 -2.3895
14 7 2.5671 -0.5089 -3.4901
15 7 2.6323 0.3421 -4.5852
16 6 2.9814 0.3131 -5.9234
17 6 2.7910 1.5652 -6.4114
18 6 3.0388 2.0046 -7.8063
19 6 2.7969 3.3276 -8.1879
20 6 3.0435 3.6873 -9.5014
21 6 3.5166 2.7353 -10.3864
22 7 3.7354 1.4943 -9.9972
23 6 3.5164 1.1055 -8.7577
24 7 2.3325 2.3362 -5.4087
25 6 2.2364 1.6040 -4.3113
26 16 1.7709 1.7017 -2.6139
27 1 -0.3633 0.5138 -0.8900
28 1 -0.3633 -1.0276 0.0005
29 1 -0.3633 0.5139 0.8899
30 1 0.7094 1.1619 3.4843
31 1 2.2490 -1.6318 -1.1525
32 1 3.3390 -0.5435 -6.4752
33 1 2.4228 4.0493 -7.4770
34 1 2.8678 4.7004 -9.8321
35 1 3.7097 3.0125 -11.4122
36 1 3.7080 0.0804 -8.4766
RHF calculation, no. of doubly occupied orbitals= 54
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000302099675.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:09:31
Heat of formation + Delta-G solvation = 162.265152 kcal
Electronic energy + Delta-G solvation = -21896.091515 eV
Core-core repulsion = 18509.191802 eV
Total energy + Delta-G solvation = -3386.899712 eV
No. of doubly occupied orbitals = 54
Molecular weight
(most abundant/longest-lived isotopes) = 315.085 amu
Computer time = 0.57 seconds
Orbital eigenvalues (eV)
-42.22279 -40.05018 -37.95279 -35.89888 -33.29221 -32.59734 -31.92132 -30.80447
-29.12155 -27.82282 -25.64351 -24.20754 -23.99266 -23.25626 -21.41524 -20.86811
-20.42882 -18.93075 -17.25311 -17.16852 -16.25744 -16.18143 -16.07421 -15.49720
-15.29700 -14.76416 -14.44193 -14.14469 -13.88392 -13.71951 -13.41657 -13.14340
-12.94844 -12.27588 -12.12195 -11.80567 -11.45711 -11.31360 -11.07843 -10.72690
-10.54430 -10.51254 -10.41919 -10.30821 -9.87582 -9.74652 -9.64478 -9.48296
-8.88718 -8.71303 -7.91993 -7.65118 -6.44993 -4.55792 0.68480 0.70300
1.13720 1.51625 1.53159 1.92427 2.31783 2.88976 3.07987 3.17196
3.19639 3.75286 3.84369 4.11633 4.21504 4.40350 4.55669 4.74716
4.85041 4.89493 4.92335 5.20283 5.35431 5.53129 5.69242 5.93721
5.98505 6.13651 6.22491 6.39248 6.51709 6.54923 6.56369 6.78516
7.20223 7.34591 7.43006 7.63164 7.70353 7.79943 7.93246 8.02022
8.48847 9.13033 10.61329
Molecular weight = 315.08amu
Principal moments of inertia in cm(-1)
A = 0.045953 B = 0.002449 C = 0.002382
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 609.170292 B =11429.213726 C =11753.735720
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.159 4.159
2 C 0.264 3.736
3 H 0.049 0.951
4 C -0.538 4.538
5 H 0.069 0.931
6 C 0.071 3.929
7 N -0.881 5.881
8 Si 0.909 3.091
9 H -0.271 1.271
10 H -0.280 1.280
11 H -0.280 1.280
12 N -0.643 5.643
13 C 0.360 3.640
14 N -0.370 5.370
15 N -0.274 5.274
16 C 0.011 3.989
17 C 0.055 3.945
18 C -0.037 4.037
19 C -0.053 4.053
20 C -0.170 4.170
21 C 0.089 3.911
22 N -0.482 5.482
23 C 0.107 3.893
24 N -0.438 5.438
25 C 0.098 3.902
26 S 0.179 5.821
27 H 0.018 0.982
28 H 0.039 0.961
29 H 0.102 0.898
30 H 0.269 0.731
31 H 0.412 0.588
32 H 0.185 0.815
33 H 0.143 0.857
34 H 0.136 0.864
35 H 0.155 0.845
36 H 0.157 0.843
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.011 2.913 -16.014 16.400
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.218 4.218
2 C 0.163 3.837
3 H 0.066 0.934
4 C -0.577 4.577
5 H 0.087 0.913
6 C -0.134 4.134
7 N -0.517 5.517
8 Si 0.736 3.264
9 H -0.195 1.195
10 H -0.206 1.206
11 H -0.206 1.206
12 N -0.280 5.280
13 C -0.027 4.027
14 N -0.205 5.205
15 N -0.044 5.044
16 C -0.129 4.129
17 C -0.080 4.080
18 C -0.041 4.041
19 C -0.079 4.079
20 C -0.190 4.190
21 C -0.068 4.068
22 N -0.190 5.190
23 C -0.052 4.052
24 N -0.162 5.162
25 C -0.272 4.272
26 S 0.410 5.590
27 H 0.037 0.963
28 H 0.058 0.942
29 H 0.120 0.880
30 H 0.079 0.921
31 H 0.250 0.750
32 H 0.202 0.798
33 H 0.161 0.839
34 H 0.154 0.846
35 H 0.172 0.828
36 H 0.174 0.826
Dipole moment (debyes) X Y Z Total
from point charges 1.821 3.390 -15.806 16.268
hybrid contribution 0.452 -1.303 1.030 1.721
sum 2.273 2.087 -14.776 15.095
Atomic orbital electron populations
1.22295 0.97251 1.00689 1.01592 1.19273 0.91800 0.93352 0.79280
0.93385 1.21057 1.33406 1.13933 0.89280 0.91256 1.24872 0.94389
0.94878 0.99248 1.69854 1.35162 1.22096 1.24607 0.86253 0.78748
0.79552 0.81834 1.19532 1.20584 1.20594 1.45308 1.66031 1.13082
1.03595 1.24574 0.92908 0.94371 0.90847 1.74288 1.38012 1.15019
0.93176 1.47184 1.43864 1.05845 1.07520 1.22327 1.10285 1.00451
0.79788 1.18668 1.06910 0.89613 0.92777 1.18744 1.00493 0.94693
0.90153 1.21698 0.94816 0.95413 0.96021 1.22110 1.01451 1.01347
0.94115 1.22775 0.95415 0.88590 1.00023 1.67662 1.15550 1.18379
1.17419 1.22752 0.95022 0.99546 0.87839 1.70452 1.19777 1.30246
0.95694 1.26737 1.11720 0.86706 1.02012 1.85884 1.74272 1.05181
0.93628 0.96287 0.94189 0.88000 0.92061 0.74957 0.79768 0.83921
0.84603 0.82820 0.82565
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -3.29 9.27 37.16 0.34 -2.95 16
2 C 0.26 5.61 2.53 -69.08 -0.17 5.44 16
3 H 0.05 1.10 7.27 -51.93 -0.38 0.72 16
4 C -0.54 -12.58 8.73 -34.44 -0.30 -12.88 16
5 H 0.07 1.58 7.74 -52.48 -0.41 1.18 16
6 C 0.07 1.70 5.30 -17.82 -0.09 1.60 16
7 N -0.88 -21.89 11.32 55.43 0.63 -21.26 16
8 Si 0.91 18.90 29.54 -169.99 -5.02 13.88 16
9 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16
10 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16
11 H -0.28 -5.83 7.11 56.52 0.40 -5.42 16
12 N -0.64 -11.92 5.22 -55.98 -0.29 -12.21 16
13 C 0.36 6.57 8.39 -88.92 -0.75 5.83 16
14 N -0.37 -6.81 12.02 30.48 0.37 -6.45 16
15 N -0.27 -4.87 4.38 -12.23 -0.05 -4.92 16
16 C 0.01 0.17 11.44 -15.52 -0.18 -0.01 16
17 C 0.05 0.82 6.86 -83.43 -0.57 0.25 16
18 C -0.04 -0.47 5.89 -104.75 -0.62 -1.09 16
19 C -0.05 -0.60 9.83 -38.94 -0.38 -0.98 16
20 C -0.17 -1.53 10.10 -39.49 -0.40 -1.93 16
21 C 0.09 0.83 11.17 -17.50 -0.20 0.64 16
22 N -0.48 -5.53 10.35 -12.96 -0.13 -5.67 16
23 C 0.11 1.20 10.73 -17.18 -0.18 1.02 16
24 N -0.44 -7.63 11.08 -10.08 -0.11 -7.74 16
25 C 0.10 1.78 8.98 -88.87 -0.80 0.98 16
26 S 0.18 3.12 21.96 -107.50 -2.36 0.76 16
27 H 0.02 0.35 8.09 -51.93 -0.42 -0.07 16
28 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16
29 H 0.10 2.33 6.07 -51.93 -0.32 2.01 16
30 H 0.27 6.38 8.31 -40.82 -0.34 6.04 16
31 H 0.41 7.10 8.66 -40.82 -0.35 6.74 16
32 H 0.19 2.00 7.29 -52.49 -0.38 1.62 16
33 H 0.14 1.61 7.94 -52.49 -0.42 1.19 16
34 H 0.14 0.83 8.06 -52.48 -0.42 0.41 16
35 H 0.15 0.97 8.06 -52.49 -0.42 0.55 16
36 H 0.16 1.40 7.02 -52.49 -0.37 1.03 16
LS Contribution 329.05 15.07 4.96 4.96
Total: -1.00 -27.26 329.05 -9.76 -37.02
By element:
Atomic # 1 Polarization: 9.16 SS G_CDS: -3.44 Total: 5.72 kcal
Atomic # 6 Polarization: 0.21 SS G_CDS: -4.30 Total: -4.08 kcal
Atomic # 7 Polarization: -58.65 SS G_CDS: 0.40 Total: -58.25 kcal
Atomic # 14 Polarization: 18.90 SS G_CDS: -5.02 Total: 13.88 kcal
Atomic # 16 Polarization: 3.12 SS G_CDS: -2.36 Total: 0.76 kcal
Total LS contribution 4.96 Total: 4.96 kcal
Total: -27.26 -9.76 -37.02 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000302099675.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 199.290 kcal
(2) G-P(sol) polarization free energy of solvation -27.263 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 172.027 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.762 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.025 kcal
(6) G-S(sol) free energy of system = (1) + (5) 162.265 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.57 seconds