Wall clock time and date at job start Tue Mar 31 2020 11:09:30
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53005 * 1
3 3 H 1.09000 * 109.46788 * 2 1
4 4 C 1.50700 * 109.46707 * 119.99596 * 2 1 3
5 5 H 1.08004 * 119.99454 * 120.00544 * 4 2 1
6 6 C 1.37875 * 120.00488 * 300.00133 * 4 2 1
7 7 N 1.31519 * 119.99718 * 359.97438 * 6 4 2
8 8 Si 1.86798 * 120.00085 * 180.02562 * 6 4 2
9 9 H 1.48497 * 109.47265 * 359.97438 * 8 6 4
10 10 H 1.48498 * 109.47462 * 119.99912 * 8 6 4
11 11 H 1.48503 * 109.46994 * 239.99714 * 8 6 4
12 12 N 1.46500 * 109.47185 * 239.99706 * 2 1 3
13 13 C 1.38543 * 119.99478 * 85.00125 * 12 2 1
14 14 N 1.28228 * 124.89829 * 180.02562 * 13 12 2
15 15 N 1.38844 * 116.65659 * 179.97438 * 14 13 12
16 16 C 1.38330 * 139.63974 * 180.32662 * 15 14 13
17 17 C 1.35721 * 107.04468 * 180.02562 * 16 15 14
18 18 C 1.48334 * 126.01217 * 179.90722 * 17 16 15
19 19 C 1.39805 * 120.53600 * 179.71606 * 18 17 16
20 20 C 1.38397 * 118.30585 * 180.02562 * 19 18 17
21 21 C 1.38325 * 119.29247 * 0.02562 * 20 19 18
22 22 N 1.31889 * 121.03210 * 359.97438 * 21 20 19
23 23 C 1.31739 * 121.85725 * 359.97438 * 22 21 20
24 24 N 1.34536 * 107.96888 * 359.64321 * 17 16 15
25 25 C 1.32274 * 109.01588 * 0.22517 * 24 17 16
26 26 S 1.75744 * 124.90789 * 359.97438 * 13 12 2
27 27 H 1.09000 * 109.46830 * 60.00099 * 1 2 3
28 28 H 1.08991 * 109.47231 * 180.02562 * 1 2 3
29 29 H 1.09000 * 109.47147 * 300.00564 * 1 2 3
30 30 H 0.96994 * 119.99810 * 180.02562 * 7 6 4
31 31 H 0.96996 * 119.99996 * 265.00541 * 12 2 1
32 32 H 1.07995 * 126.47828 * 359.95249 * 16 15 14
33 33 H 1.07991 * 120.84462 * 359.74634 * 19 18 17
34 34 H 1.08008 * 120.35808 * 179.97438 * 20 19 18
35 35 H 1.08000 * 119.48230 * 179.97438 * 21 20 19
36 36 H 1.08002 * 119.70114 * 180.02562 * 23 22 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0323 -0.7103 1.2305
5 1 2.6533 -1.5884 1.1314
6 6 1.6992 -0.2393 2.4828
7 7 0.9435 0.8303 2.6034
8 14 2.3224 -1.1195 4.0080
9 1 3.1472 -2.2863 3.6039
10 1 3.1471 -0.1857 4.8162
11 1 1.1676 -1.5864 4.8166
12 7 2.0184 -0.6907 -1.1961
13 6 2.1507 0.0005 -2.3895
14 7 2.5671 -0.5089 -3.4901
15 7 2.6323 0.3421 -4.5852
16 6 2.9814 0.3131 -5.9234
17 6 2.7910 1.5652 -6.4114
18 6 3.0388 2.0046 -7.8063
19 6 2.7969 3.3276 -8.1879
20 6 3.0435 3.6873 -9.5014
21 6 3.5166 2.7353 -10.3864
22 7 3.7354 1.4943 -9.9972
23 6 3.5164 1.1055 -8.7577
24 7 2.3325 2.3362 -5.4087
25 6 2.2364 1.6040 -4.3113
26 16 1.7709 1.7017 -2.6139
27 1 -0.3633 0.5138 -0.8900
28 1 -0.3633 -1.0276 0.0005
29 1 -0.3633 0.5139 0.8899
30 1 0.7094 1.1619 3.4843
31 1 2.2490 -1.6318 -1.1525
32 1 3.3390 -0.5435 -6.4752
33 1 2.4228 4.0493 -7.4770
34 1 2.8678 4.7004 -9.8321
35 1 3.7097 3.0125 -11.4122
36 1 3.7080 0.0804 -8.4766
RHF calculation, no. of doubly occupied orbitals= 54
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000302099675.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:09:30
Heat of formation + Delta-G solvation = 147.762126 kcal
Electronic energy + Delta-G solvation = -21896.720413 eV
Core-core repulsion = 18509.191802 eV
Total energy + Delta-G solvation = -3387.528611 eV
No. of doubly occupied orbitals = 54
Molecular weight
(most abundant/longest-lived isotopes) = 315.085 amu
Computer time = 0.65 seconds
Orbital eigenvalues (eV)
-43.49037 -40.88628 -39.37391 -37.39875 -34.82526 -33.67392 -32.79768 -32.21337
-30.55239 -29.07911 -27.42309 -25.43732 -24.96311 -24.29257 -22.96289 -22.18246
-21.62039 -20.29539 -18.76051 -18.07188 -17.59414 -17.46159 -17.31298 -16.86949
-16.47834 -16.02295 -15.73822 -15.42409 -15.10863 -14.73484 -14.59174 -14.54840
-13.98354 -13.76688 -13.42934 -13.08674 -13.00226 -12.81121 -12.71218 -12.36755
-12.17165 -11.89132 -11.84792 -11.49275 -11.21213 -11.19718 -10.66543 -10.57107
-10.46807 -9.89618 -9.33300 -8.91046 -8.26101 -6.41746 -0.65963 -0.24200
0.15831 0.22097 0.34394 0.59112 0.94203 1.43818 1.48170 1.57242
1.78329 2.29157 2.49147 2.99469 3.06805 3.11433 3.29806 3.67676
3.91775 4.00004 4.09278 4.27065 4.39654 4.51124 4.64777 4.76312
4.82358 4.84242 4.88263 5.08628 5.14825 5.24343 5.38392 5.51105
5.63900 5.76047 5.80650 5.97612 6.30722 6.43003 6.55793 6.74410
7.00866 7.29828 8.79901
Molecular weight = 315.08amu
Principal moments of inertia in cm(-1)
A = 0.045953 B = 0.002449 C = 0.002382
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 609.170292 B =11429.213726 C =11753.735720
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.149 4.149
2 C 0.272 3.728
3 H 0.030 0.970
4 C -0.549 4.549
5 H 0.072 0.928
6 C 0.028 3.972
7 N -0.906 5.906
8 Si 0.966 3.034
9 H -0.266 1.266
10 H -0.282 1.282
11 H -0.279 1.279
12 N -0.642 5.642
13 C 0.355 3.645
14 N -0.373 5.373
15 N -0.285 5.285
16 C 0.011 3.989
17 C 0.056 3.944
18 C -0.061 4.061
19 C -0.065 4.065
20 C -0.162 4.162
21 C 0.092 3.908
22 N -0.502 5.502
23 C 0.108 3.892
24 N -0.452 5.452
25 C 0.072 3.928
26 S 0.182 5.818
27 H 0.031 0.969
28 H 0.042 0.958
29 H 0.080 0.920
30 H 0.270 0.730
31 H 0.418 0.582
32 H 0.222 0.778
33 H 0.136 0.864
34 H 0.168 0.832
35 H 0.187 0.813
36 H 0.175 0.825
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.695 2.635 -18.000 18.390
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.209 4.209
2 C 0.170 3.830
3 H 0.048 0.952
4 C -0.588 4.588
5 H 0.090 0.910
6 C -0.174 4.174
7 N -0.544 5.544
8 Si 0.792 3.208
9 H -0.191 1.191
10 H -0.208 1.208
11 H -0.205 1.205
12 N -0.280 5.280
13 C -0.031 4.031
14 N -0.208 5.208
15 N -0.057 5.057
16 C -0.127 4.127
17 C -0.078 4.078
18 C -0.065 4.065
19 C -0.091 4.091
20 C -0.181 4.181
21 C -0.064 4.064
22 N -0.210 5.210
23 C -0.050 4.050
24 N -0.177 5.177
25 C -0.297 4.297
26 S 0.413 5.587
27 H 0.050 0.950
28 H 0.061 0.939
29 H 0.099 0.901
30 H 0.079 0.921
31 H 0.258 0.742
32 H 0.238 0.762
33 H 0.154 0.846
34 H 0.186 0.814
35 H 0.204 0.796
36 H 0.192 0.808
Dipole moment (debyes) X Y Z Total
from point charges 2.514 3.105 -17.827 18.269
hybrid contribution 0.278 -1.122 1.395 1.811
sum 2.792 1.984 -16.432 16.785
Atomic orbital electron populations
1.22137 0.96920 1.00654 1.01144 1.18974 0.91950 0.92406 0.79700
0.95219 1.21363 1.33206 1.14016 0.90172 0.91015 1.25572 0.94658
0.95497 1.01690 1.69956 1.36149 1.23198 1.25067 0.85367 0.78108
0.78535 0.78797 1.19055 1.20826 1.20505 1.44950 1.66676 1.13215
1.03197 1.24535 0.93167 0.94702 0.90714 1.74172 1.37503 1.15679
0.93409 1.47368 1.44601 1.05577 1.08126 1.23056 1.09209 1.01644
0.78783 1.19124 1.05804 0.89493 0.93363 1.18786 1.02759 0.95756
0.89199 1.21834 0.95075 0.94989 0.97207 1.22419 1.00063 1.02855
0.92802 1.23395 0.93638 0.87867 1.01511 1.67749 1.16356 1.19598
1.17335 1.22999 0.94228 1.00158 0.87572 1.70430 1.20151 1.30959
0.96140 1.26791 1.13283 0.87267 1.02318 1.85777 1.74301 1.04698
0.93912 0.94985 0.93918 0.90124 0.92080 0.74246 0.76182 0.84565
0.81428 0.79571 0.80798
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -6.22 9.27 71.98 0.67 -5.56 16
2 C 0.27 11.65 2.53 44.25 0.11 11.76 16
3 H 0.03 1.40 7.27 -2.39 -0.02 1.38 16
4 C -0.55 -25.67 8.73 25.60 0.22 -25.45 16
5 H 0.07 3.24 7.74 -2.91 -0.02 3.22 16
6 C 0.03 1.33 5.30 84.65 0.45 1.78 16
7 N -0.91 -45.56 11.32 21.45 0.24 -45.31 16
8 Si 0.97 38.60 29.54 68.60 2.03 40.63 16
9 H -0.27 -10.34 7.11 99.48 0.71 -9.63 16
10 H -0.28 -11.30 7.11 99.48 0.71 -10.60 16
11 H -0.28 -11.04 7.11 99.48 0.71 -10.33 16
12 N -0.64 -23.81 5.22 -331.01 -1.73 -25.53 16
13 C 0.36 13.00 8.39 179.75 1.51 14.51 16
14 N -0.37 -13.58 12.02 -57.47 -0.69 -14.27 16
15 N -0.29 -9.96 4.38 -192.61 -0.84 -10.81 16
16 C 0.01 0.31 11.44 83.08 0.95 1.26 16
17 C 0.06 1.64 6.86 40.84 0.28 1.92 16
18 C -0.06 -1.47 5.89 -19.95 -0.12 -1.59 16
19 C -0.06 -1.37 9.83 22.69 0.22 -1.15 16
20 C -0.16 -2.45 10.10 22.33 0.23 -2.22 16
21 C 0.09 1.43 11.17 84.70 0.95 2.38 16
22 N -0.50 -10.25 10.35 -194.92 -2.02 -12.26 16
23 C 0.11 2.22 10.73 84.97 0.91 3.13 16
24 N -0.45 -15.74 11.08 -185.80 -2.06 -17.80 16
25 C 0.07 2.63 8.98 179.74 1.61 4.24 16
26 S 0.18 6.42 21.96 -56.49 -1.24 5.18 16
27 H 0.03 1.20 8.09 -2.39 -0.02 1.18 16
28 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16
29 H 0.08 3.74 6.07 -2.39 -0.01 3.73 16
30 H 0.27 12.92 8.31 -92.71 -0.77 12.15 16
31 H 0.42 14.29 8.66 -92.71 -0.80 13.49 16
32 H 0.22 4.24 7.29 -2.91 -0.02 4.22 16
33 H 0.14 3.01 7.94 -2.92 -0.02 2.98 16
34 H 0.17 1.41 8.06 -2.91 -0.02 1.38 16
35 H 0.19 1.57 8.06 -2.91 -0.02 1.54 16
36 H 0.18 2.70 7.02 -2.91 -0.02 2.68 16
Total: -1.00 -58.09 329.05 2.03 -56.07
By element:
Atomic # 1 Polarization: 18.74 SS G_CDS: 0.34 Total: 19.08 kcal
Atomic # 6 Polarization: -2.96 SS G_CDS: 7.99 Total: 5.03 kcal
Atomic # 7 Polarization: -118.89 SS G_CDS: -7.09 Total: -125.98 kcal
Atomic # 14 Polarization: 38.60 SS G_CDS: 2.03 Total: 40.63 kcal
Atomic # 16 Polarization: 6.42 SS G_CDS: -1.24 Total: 5.18 kcal
Total: -58.09 2.03 -56.07 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000302099675.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 203.828 kcal
(2) G-P(sol) polarization free energy of solvation -58.093 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 145.735 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.027 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.066 kcal
(6) G-S(sol) free energy of system = (1) + (5) 147.762 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.65 seconds