Wall clock time and date at job start Tue Mar 31 2020 11:19:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46507 * 120.00134 * 2 1 4 4 C 1.50697 * 109.47006 * 270.00373 * 3 2 1 5 5 H 1.07991 * 120.00449 * 359.72165 * 4 3 2 6 6 C 1.37885 * 119.99686 * 179.97438 * 4 3 2 7 7 N 1.31516 * 119.99913 * 359.72095 * 6 4 3 8 8 Si 1.86798 * 119.99766 * 179.72528 * 6 4 3 9 9 H 1.48490 * 109.47339 * 359.97438 * 8 6 4 10 10 H 1.48493 * 109.47239 * 120.00108 * 8 6 4 11 11 H 1.48504 * 109.46636 * 239.99667 * 8 6 4 12 12 C 1.39092 * 120.00200 * 180.02562 * 2 1 3 13 13 C 1.40906 * 119.59543 * 184.72883 * 12 2 1 14 14 C 1.35936 * 120.13437 * 179.69297 * 13 12 2 15 15 C 1.40772 * 119.14957 * 0.58844 * 14 13 12 16 16 N 1.32370 * 133.68955 * 179.70926 * 15 14 13 17 17 N 1.28697 * 109.62605 * 179.97438 * 16 15 14 18 18 C 1.31991 * 110.10610 * 359.97438 * 17 16 15 19 19 C 1.47877 * 126.34993 * 179.97438 * 18 17 16 20 20 C 1.39527 * 122.80362 * 345.02812 * 19 18 17 21 21 C 1.33001 * 114.91151 * 179.97438 * 20 19 18 22 22 S 1.75801 * 109.98953 * 0.02562 * 21 20 19 23 23 C 1.34773 * 122.81345 * 164.73720 * 19 18 17 24 24 N 1.36269 * 107.30887 * 0.02562 * 18 17 16 25 25 N 1.31240 * 119.59321 * 4.99777 * 12 2 1 26 26 H 1.09005 * 109.47477 * 89.99576 * 1 2 3 27 27 H 1.08993 * 109.47146 * 209.99880 * 1 2 3 28 28 H 1.09008 * 109.47223 * 329.99803 * 1 2 3 29 29 H 1.08998 * 109.47049 * 149.99802 * 3 2 1 30 30 H 1.09001 * 109.46896 * 30.00073 * 3 2 1 31 31 H 0.97000 * 119.99651 * 180.02562 * 7 6 4 32 32 H 1.07999 * 119.92959 * 359.97438 * 13 12 2 33 33 H 1.08003 * 120.42309 * 180.26819 * 14 13 12 34 34 H 1.07994 * 122.54378 * 0.02614 * 20 19 18 35 35 H 1.08000 * 125.00397 * 179.97438 * 21 20 19 36 36 H 1.08008 * 125.22873 * 359.96674 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4486 1.7038 -1.4208 5 1 2.1016 1.0939 -2.2417 6 6 3.1260 2.8781 -1.6727 7 7 3.5481 3.6212 -0.6730 8 14 3.4439 3.4135 -3.4338 9 1 2.8722 2.4101 -4.3672 10 1 2.8058 4.7328 -3.6730 11 1 4.9074 3.5231 -3.6612 12 6 2.1605 -1.2045 -0.0005 13 6 3.5659 -1.1967 0.1005 14 6 4.2562 -2.3677 0.1073 15 6 3.5498 -3.5807 -0.0002 16 7 3.9158 -4.8524 -0.0286 17 7 2.8740 -5.5997 -0.1405 18 6 1.7850 -4.8554 -0.1896 19 6 0.3948 -5.3434 -0.3167 20 6 0.0839 -6.6476 -0.7029 21 6 -1.2168 -6.9183 -0.7657 22 16 -2.1489 -5.4938 -0.3268 23 6 -0.6776 -4.5674 -0.0638 24 7 2.1791 -3.5539 -0.1025 25 7 1.5000 -2.3342 -0.1005 26 1 -0.3634 0.0001 -1.0277 27 1 -0.3633 -0.8899 0.5138 28 1 -0.3634 0.8900 0.5139 29 1 3.1499 1.1384 0.5139 30 1 1.6084 2.0284 0.5139 31 1 4.0243 4.4474 -0.8503 32 1 4.0954 -0.2585 0.1772 33 1 5.3331 -2.3673 0.1889 34 1 0.8418 -7.3818 -0.9326 35 1 -1.6382 -7.8724 -1.0459 36 1 -0.6392 -3.5348 0.2506 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000302327352.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:30 Heat of formation + Delta-G solvation = 187.272200 kcal Electronic energy + Delta-G solvation = -22937.013284 eV Core-core repulsion = 19551.197959 eV Total energy + Delta-G solvation = -3385.815325 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 315.085 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.83074 -38.94917 -37.86393 -35.85646 -33.50482 -33.00977 -30.86027 -30.52091 -28.99910 -28.09247 -26.17925 -24.82040 -23.59070 -23.08306 -21.89502 -21.32666 -19.21076 -18.13996 -17.77246 -17.06772 -16.80036 -16.32622 -16.17806 -15.62566 -14.89951 -14.28693 -13.91522 -13.54635 -13.35423 -13.28971 -13.18034 -12.89130 -12.53244 -12.50316 -12.34989 -11.93093 -11.89207 -11.58040 -11.17424 -11.05402 -11.02991 -10.93015 -10.53694 -10.38932 -10.30030 -9.84471 -9.70856 -9.19652 -8.78154 -8.76662 -7.88599 -7.54340 -6.37545 -4.47437 0.67124 0.80131 1.48663 1.58101 1.82801 1.98390 2.44813 3.10664 3.20330 3.23857 3.27721 3.46013 3.55332 4.16405 4.18764 4.44054 4.72661 4.81748 4.92149 4.96673 5.19243 5.38001 5.49758 5.59473 5.64509 5.84265 5.86201 5.89170 5.98582 6.11495 6.14818 6.21719 6.31515 6.39261 6.67381 6.86530 7.29218 7.58577 7.71947 7.78495 8.11726 8.60759 8.66630 9.21743 10.67874 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.016926 B = 0.003638 C = 0.003258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1653.827693 B = 7694.383290 C = 8592.152827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.559 5.559 3 C 0.246 3.754 4 C -0.545 4.545 5 H 0.063 0.937 6 C 0.068 3.932 7 N -0.889 5.889 8 Si 0.899 3.101 9 H -0.272 1.272 10 H -0.281 1.281 11 H -0.280 1.280 12 C 0.423 3.577 13 C -0.142 4.142 14 C -0.020 4.020 15 C 0.134 3.866 16 N -0.264 5.264 17 N -0.257 5.257 18 C 0.242 3.758 19 C -0.026 4.026 20 C -0.100 4.100 21 C -0.220 4.220 22 S 0.114 5.886 23 C -0.176 4.176 24 N -0.261 5.261 25 N -0.371 5.371 26 H 0.053 0.947 27 H 0.063 0.937 28 H 0.071 0.929 29 H 0.042 0.958 30 H 0.048 0.952 31 H 0.268 0.732 32 H 0.170 0.830 33 H 0.165 0.835 34 H 0.151 0.849 35 H 0.169 0.831 36 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.629 -12.334 2.604 14.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.272 5.272 3 C 0.127 3.873 4 C -0.584 4.584 5 H 0.081 0.919 6 C -0.136 4.136 7 N -0.527 5.527 8 Si 0.726 3.274 9 H -0.197 1.197 10 H -0.207 1.207 11 H -0.206 1.206 12 C 0.159 3.841 13 C -0.170 4.170 14 C -0.047 4.047 15 C -0.122 4.122 16 N -0.115 5.115 17 N -0.104 5.104 18 C -0.023 4.023 19 C -0.040 4.040 20 C -0.131 4.131 21 C -0.355 4.355 22 S 0.376 5.624 23 C -0.315 4.315 24 N -0.033 5.033 25 N -0.207 5.207 26 H 0.071 0.929 27 H 0.082 0.918 28 H 0.090 0.910 29 H 0.060 0.940 30 H 0.066 0.934 31 H 0.077 0.923 32 H 0.188 0.812 33 H 0.183 0.817 34 H 0.169 0.831 35 H 0.186 0.814 36 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -9.215 -13.190 2.696 16.314 hybrid contribution 1.786 1.610 -1.112 2.649 sum -7.428 -11.580 1.584 13.849 Atomic orbital electron populations 1.21598 0.79334 1.01906 1.01688 1.47187 1.06015 1.02397 1.71615 1.19675 0.92361 0.77141 0.98116 1.21508 1.37707 1.07156 0.92022 0.91874 1.24934 0.94899 0.95956 0.97821 1.69912 1.37629 1.14193 1.30933 0.86408 0.78255 0.78683 0.84018 1.19653 1.20657 1.20596 1.19356 0.89727 0.87135 0.87917 1.21778 0.93197 1.00644 1.01369 1.20283 1.01201 0.86711 0.96493 1.22387 0.83368 0.96723 1.09731 1.74773 1.20212 0.97306 1.19165 1.74739 0.93519 1.24267 1.17876 1.21721 0.95215 0.76932 1.08387 1.16419 0.87331 0.94195 1.06100 1.20015 0.96379 0.95606 1.01100 1.25402 0.96543 1.02732 1.10795 1.84189 1.08719 1.03178 1.66263 1.26050 0.94488 1.04476 1.06479 1.47111 1.05857 1.05219 1.45146 1.75542 1.18903 0.87374 1.38926 0.92864 0.91849 0.91045 0.94019 0.93403 0.92255 0.81220 0.81745 0.83100 0.81376 0.80603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.51 10.46 59.85 0.63 2.14 16 2 N -0.56 -10.29 2.97 -182.81 -0.54 -10.83 16 3 C 0.25 5.18 5.04 -5.19 -0.03 5.16 16 4 C -0.55 -13.12 9.39 -34.44 -0.32 -13.45 16 5 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 6 C 0.07 1.68 5.46 -17.82 -0.10 1.58 16 7 N -0.89 -22.84 13.29 55.43 0.74 -22.10 16 8 Si 0.90 19.60 29.54 -169.99 -5.02 14.58 16 9 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 10 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 11 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 12 C 0.42 7.71 7.48 -155.23 -1.16 6.55 16 13 C -0.14 -2.38 9.20 -39.40 -0.36 -2.74 16 14 C -0.02 -0.31 10.11 -39.45 -0.40 -0.70 16 15 C 0.13 2.44 7.99 -155.89 -1.25 1.19 16 16 N -0.26 -5.04 12.30 31.17 0.38 -4.66 16 17 N -0.26 -4.81 12.17 32.47 0.40 -4.42 16 18 C 0.24 4.34 7.90 -154.36 -1.22 3.12 16 19 C -0.03 -0.38 5.79 -106.70 -0.62 -1.00 16 20 C -0.10 -1.25 9.96 -40.92 -0.41 -1.65 16 21 C -0.22 -2.21 11.18 28.92 0.32 -1.89 16 22 S 0.11 1.18 23.32 -107.50 -2.51 -1.33 16 23 C -0.18 -2.39 10.77 29.50 0.32 -2.07 16 24 N -0.26 -4.86 4.07 -9.95 -0.04 -4.90 16 25 N -0.37 -6.77 9.40 31.33 0.29 -6.48 16 26 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.06 0.89 7.45 -51.93 -0.39 0.50 16 28 H 0.07 1.00 7.89 -51.92 -0.41 0.59 16 29 H 0.04 0.89 5.97 -51.93 -0.31 0.58 16 30 H 0.05 1.05 7.89 -51.93 -0.41 0.64 16 31 H 0.27 6.56 8.31 -40.82 -0.34 6.22 16 32 H 0.17 2.78 6.02 -52.49 -0.32 2.47 16 33 H 0.17 1.97 8.06 -52.48 -0.42 1.55 16 34 H 0.15 1.75 8.06 -52.49 -0.42 1.33 16 35 H 0.17 1.18 8.06 -52.49 -0.42 0.76 16 36 H 0.18 2.50 7.01 -52.48 -0.37 2.13 16 LS Contribution 329.77 15.07 4.97 4.97 Total: -1.00 -28.20 329.77 -9.36 -37.56 By element: Atomic # 1 Polarization: 4.82 SS G_CDS: -3.44 Total: 1.38 kcal Atomic # 6 Polarization: 0.82 SS G_CDS: -4.59 Total: -3.77 kcal Atomic # 7 Polarization: -54.62 SS G_CDS: 1.23 Total: -53.40 kcal Atomic # 14 Polarization: 19.60 SS G_CDS: -5.02 Total: 14.58 kcal Atomic # 16 Polarization: 1.18 SS G_CDS: -2.51 Total: -1.33 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -28.20 -9.36 -37.56 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000302327352.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 224.836 kcal (2) G-P(sol) polarization free energy of solvation -28.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 196.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.564 kcal (6) G-S(sol) free energy of system = (1) + (5) 187.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds