Wall clock time and date at job start Tue Mar 31 2020 11:19:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46507 * 120.00134 * 2 1 4 4 C 1.50697 * 109.47006 * 270.00373 * 3 2 1 5 5 H 1.07991 * 120.00449 * 359.72165 * 4 3 2 6 6 C 1.37885 * 119.99686 * 179.97438 * 4 3 2 7 7 N 1.31516 * 119.99913 * 359.72095 * 6 4 3 8 8 Si 1.86798 * 119.99766 * 179.72528 * 6 4 3 9 9 H 1.48490 * 109.47339 * 359.97438 * 8 6 4 10 10 H 1.48493 * 109.47239 * 120.00108 * 8 6 4 11 11 H 1.48504 * 109.46636 * 239.99667 * 8 6 4 12 12 C 1.39092 * 120.00200 * 180.02562 * 2 1 3 13 13 C 1.40906 * 119.59543 * 184.72883 * 12 2 1 14 14 C 1.35936 * 120.13437 * 179.69297 * 13 12 2 15 15 C 1.40772 * 119.14957 * 0.58844 * 14 13 12 16 16 N 1.32370 * 133.68955 * 179.70926 * 15 14 13 17 17 N 1.28697 * 109.62605 * 179.97438 * 16 15 14 18 18 C 1.31991 * 110.10610 * 359.97438 * 17 16 15 19 19 C 1.47877 * 126.34993 * 179.97438 * 18 17 16 20 20 C 1.39527 * 122.80362 * 345.02812 * 19 18 17 21 21 C 1.33001 * 114.91151 * 179.97438 * 20 19 18 22 22 S 1.75801 * 109.98953 * 0.02562 * 21 20 19 23 23 C 1.34773 * 122.81345 * 164.73720 * 19 18 17 24 24 N 1.36269 * 107.30887 * 0.02562 * 18 17 16 25 25 N 1.31240 * 119.59321 * 4.99777 * 12 2 1 26 26 H 1.09005 * 109.47477 * 89.99576 * 1 2 3 27 27 H 1.08993 * 109.47146 * 209.99880 * 1 2 3 28 28 H 1.09008 * 109.47223 * 329.99803 * 1 2 3 29 29 H 1.08998 * 109.47049 * 149.99802 * 3 2 1 30 30 H 1.09001 * 109.46896 * 30.00073 * 3 2 1 31 31 H 0.97000 * 119.99651 * 180.02562 * 7 6 4 32 32 H 1.07999 * 119.92959 * 359.97438 * 13 12 2 33 33 H 1.08003 * 120.42309 * 180.26819 * 14 13 12 34 34 H 1.07994 * 122.54378 * 0.02614 * 20 19 18 35 35 H 1.08000 * 125.00397 * 179.97438 * 21 20 19 36 36 H 1.08008 * 125.22873 * 359.96674 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4486 1.7038 -1.4208 5 1 2.1016 1.0939 -2.2417 6 6 3.1260 2.8781 -1.6727 7 7 3.5481 3.6212 -0.6730 8 14 3.4439 3.4135 -3.4338 9 1 2.8722 2.4101 -4.3672 10 1 2.8058 4.7328 -3.6730 11 1 4.9074 3.5231 -3.6612 12 6 2.1605 -1.2045 -0.0005 13 6 3.5659 -1.1967 0.1005 14 6 4.2562 -2.3677 0.1073 15 6 3.5498 -3.5807 -0.0002 16 7 3.9158 -4.8524 -0.0286 17 7 2.8740 -5.5997 -0.1405 18 6 1.7850 -4.8554 -0.1896 19 6 0.3948 -5.3434 -0.3167 20 6 0.0839 -6.6476 -0.7029 21 6 -1.2168 -6.9183 -0.7657 22 16 -2.1489 -5.4938 -0.3268 23 6 -0.6776 -4.5674 -0.0638 24 7 2.1791 -3.5539 -0.1025 25 7 1.5000 -2.3342 -0.1005 26 1 -0.3634 0.0001 -1.0277 27 1 -0.3633 -0.8899 0.5138 28 1 -0.3634 0.8900 0.5139 29 1 3.1499 1.1384 0.5139 30 1 1.6084 2.0284 0.5139 31 1 4.0243 4.4474 -0.8503 32 1 4.0954 -0.2585 0.1772 33 1 5.3331 -2.3673 0.1889 34 1 0.8418 -7.3818 -0.9326 35 1 -1.6382 -7.8724 -1.0459 36 1 -0.6392 -3.5348 0.2506 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000302327352.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:30 Heat of formation + Delta-G solvation = 174.384375 kcal Electronic energy + Delta-G solvation = -22937.572142 eV Core-core repulsion = 19551.197959 eV Total energy + Delta-G solvation = -3386.374183 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 315.085 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -44.20875 -40.33730 -38.86355 -37.31818 -34.84536 -34.80113 -32.29490 -31.72629 -30.20702 -29.59156 -27.66107 -26.00652 -25.23235 -24.34564 -23.10422 -22.77013 -20.32730 -19.44612 -18.90911 -18.65220 -18.31656 -17.69989 -17.52787 -16.80269 -16.50785 -15.76073 -15.28793 -14.88827 -14.63914 -14.38553 -14.26549 -14.09406 -13.91944 -13.76908 -13.49547 -13.35771 -13.28181 -13.16738 -12.79837 -12.60082 -12.42133 -12.19988 -12.00495 -11.86626 -11.80570 -11.35747 -11.24005 -10.64621 -10.30309 -9.70974 -9.12822 -8.96130 -8.23503 -6.40076 -0.60480 -0.32985 0.37619 0.49298 0.67782 0.93075 1.22811 1.37849 1.43406 1.51654 2.01799 2.09576 2.18602 2.38541 2.88655 3.05530 3.13481 3.46836 3.52579 3.90341 4.08211 4.19229 4.33330 4.51407 4.55335 4.60849 4.63902 4.65885 4.71377 4.86890 4.94441 5.06427 5.10796 5.19376 5.25512 5.37426 5.60025 5.87531 5.97252 6.27556 6.61167 6.79857 7.26305 7.31864 8.79090 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.016926 B = 0.003638 C = 0.003258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1653.827693 B = 7694.383290 C = 8592.152827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.566 5.566 3 C 0.259 3.741 4 C -0.550 4.550 5 H 0.049 0.951 6 C 0.029 3.971 7 N -0.914 5.914 8 Si 0.951 3.049 9 H -0.277 1.277 10 H -0.278 1.278 11 H -0.277 1.277 12 C 0.413 3.587 13 C -0.154 4.154 14 C -0.004 4.004 15 C 0.120 3.880 16 N -0.280 5.280 17 N -0.275 5.275 18 C 0.243 3.757 19 C -0.052 4.052 20 C -0.123 4.123 21 C -0.201 4.201 22 S 0.174 5.826 23 C -0.194 4.194 24 N -0.274 5.274 25 N -0.373 5.373 26 H 0.048 0.952 27 H 0.076 0.924 28 H 0.084 0.916 29 H 0.040 0.960 30 H 0.039 0.961 31 H 0.270 0.730 32 H 0.173 0.827 33 H 0.201 0.799 34 H 0.154 0.846 35 H 0.205 0.795 36 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.817 -13.297 2.172 16.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.279 5.279 3 C 0.139 3.861 4 C -0.588 4.588 5 H 0.067 0.933 6 C -0.172 4.172 7 N -0.553 5.553 8 Si 0.778 3.222 9 H -0.202 1.202 10 H -0.203 1.203 11 H -0.203 1.203 12 C 0.149 3.851 13 C -0.182 4.182 14 C -0.031 4.031 15 C -0.136 4.136 16 N -0.129 5.129 17 N -0.121 5.121 18 C -0.022 4.022 19 C -0.068 4.068 20 C -0.152 4.152 21 C -0.336 4.336 22 S 0.437 5.563 23 C -0.334 4.334 24 N -0.047 5.047 25 N -0.209 5.209 26 H 0.067 0.933 27 H 0.094 0.906 28 H 0.103 0.897 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.079 0.921 32 H 0.190 0.810 33 H 0.218 0.782 34 H 0.171 0.829 35 H 0.222 0.778 36 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -10.413 -14.185 2.265 17.742 hybrid contribution 2.017 1.798 -0.968 2.870 sum -8.397 -12.387 1.298 15.021 Atomic orbital electron populations 1.21721 0.77792 1.03224 1.01789 1.47065 1.06920 1.01701 1.72188 1.19325 0.92382 0.78024 0.96351 1.21676 1.37228 1.06909 0.93022 0.93311 1.25518 0.94947 0.96163 1.00594 1.69975 1.38446 1.14619 1.32271 0.85603 0.78078 0.78091 0.80468 1.20191 1.20312 1.20257 1.19562 0.90516 0.87072 0.87929 1.21801 0.92664 1.01133 1.02570 1.20678 1.02755 0.85229 0.94408 1.22825 0.83664 0.97240 1.09873 1.74698 1.20714 0.97739 1.19791 1.74682 0.93837 1.24586 1.19004 1.22363 0.96352 0.76663 1.06804 1.16679 0.86209 0.95720 1.08171 1.20037 0.97629 0.94754 1.02824 1.25860 0.95634 1.03975 1.08120 1.84016 1.06008 1.01895 1.64383 1.26126 0.96253 1.04472 1.06530 1.47286 1.06172 1.05475 1.45784 1.75507 1.18996 0.87354 1.39002 0.93304 0.90579 0.89705 0.94207 0.94317 0.92103 0.80983 0.78191 0.82890 0.77791 0.81751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.96 10.46 127.77 1.34 4.30 16 2 N -0.57 -20.78 2.97 -732.28 -2.18 -22.96 16 3 C 0.26 10.96 5.04 85.63 0.43 11.39 16 4 C -0.55 -26.47 9.39 25.60 0.24 -26.22 16 5 H 0.05 2.46 7.81 -2.92 -0.02 2.43 16 6 C 0.03 1.43 5.46 84.66 0.46 1.89 16 7 N -0.91 -46.80 13.29 21.45 0.28 -46.52 16 8 Si 0.95 39.94 29.54 68.60 2.03 41.96 16 9 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 10 H -0.28 -11.44 7.11 99.48 0.71 -10.73 16 11 H -0.28 -11.42 7.11 99.48 0.71 -10.71 16 12 C 0.41 15.08 7.48 133.81 1.00 16.08 16 13 C -0.15 -5.11 9.20 22.39 0.21 -4.90 16 14 C 0.00 -0.12 10.11 22.35 0.23 0.11 16 15 C 0.12 4.37 7.99 133.99 1.07 5.44 16 16 N -0.28 -10.72 12.30 -55.31 -0.68 -11.40 16 17 N -0.27 -10.41 12.17 -51.18 -0.62 -11.04 16 18 C 0.24 8.79 7.90 136.43 1.08 9.87 16 19 C -0.05 -1.54 5.79 -21.21 -0.12 -1.67 16 20 C -0.12 -2.88 9.96 21.41 0.21 -2.67 16 21 C -0.20 -3.42 11.18 66.65 0.75 -2.68 16 22 S 0.17 3.13 23.32 -56.49 -1.32 1.81 16 23 C -0.19 -5.13 10.77 67.02 0.72 -4.41 16 24 N -0.27 -10.29 4.07 -185.39 -0.75 -11.04 16 25 N -0.37 -13.65 9.40 -54.80 -0.52 -14.17 16 26 H 0.05 1.52 8.14 -2.38 -0.02 1.50 16 27 H 0.08 2.10 7.45 -2.39 -0.02 2.08 16 28 H 0.08 2.32 7.89 -2.38 -0.02 2.30 16 29 H 0.04 1.71 5.97 -2.39 -0.01 1.69 16 30 H 0.04 1.71 7.89 -2.39 -0.02 1.70 16 31 H 0.27 13.14 8.31 -92.71 -0.77 12.37 16 32 H 0.17 5.61 6.02 -2.91 -0.02 5.59 16 33 H 0.20 4.42 8.06 -2.91 -0.02 4.40 16 34 H 0.15 3.43 8.06 -2.91 -0.02 3.41 16 35 H 0.21 1.93 8.06 -2.91 -0.02 1.91 16 36 H 0.16 4.66 7.01 -2.91 -0.02 4.64 16 Total: -1.00 -60.27 329.77 4.98 -55.29 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: 1.13 Total: 11.53 kcal Atomic # 6 Polarization: -1.08 SS G_CDS: 7.61 Total: 6.53 kcal Atomic # 7 Polarization: -112.66 SS G_CDS: -4.47 Total: -117.13 kcal Atomic # 14 Polarization: 39.94 SS G_CDS: 2.03 Total: 41.96 kcal Atomic # 16 Polarization: 3.13 SS G_CDS: -1.32 Total: 1.81 kcal Total: -60.27 4.98 -55.29 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000302327352.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 229.675 kcal (2) G-P(sol) polarization free energy of solvation -60.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 169.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.291 kcal (6) G-S(sol) free energy of system = (1) + (5) 174.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds