Wall clock time and date at job start Tue Mar 31 2020 11:09:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08994 * 109.47269 * 2 1 4 4 C 1.50702 * 109.46842 * 119.99756 * 2 1 3 5 5 H 1.08002 * 120.00299 * 120.00437 * 4 2 1 6 6 C 1.37884 * 119.99942 * 299.71996 * 4 2 1 7 7 N 1.31514 * 119.99698 * 0.28408 * 6 4 2 8 8 Si 1.86794 * 119.99837 * 180.27476 * 6 4 2 9 9 H 1.48501 * 109.47188 * 90.00793 * 8 6 4 10 10 H 1.48501 * 109.47085 * 210.00372 * 8 6 4 11 11 H 1.48498 * 109.47634 * 330.00608 * 8 6 4 12 12 N 1.46491 * 109.47168 * 239.99410 * 2 1 3 13 13 C 1.39099 * 120.00038 * 85.00695 * 12 2 1 14 14 C 1.40903 * 119.58953 * 359.71767 * 13 12 2 15 15 C 1.35944 * 120.13636 * 179.77773 * 14 13 12 16 16 C 1.40779 * 119.14276 * 0.48086 * 15 14 13 17 17 N 1.32367 * 133.68133 * 179.77641 * 16 15 14 18 18 N 1.28707 * 109.62357 * 179.97438 * 17 16 15 19 19 C 1.31996 * 110.10329 * 0.02562 * 18 17 16 20 20 C 1.47872 * 126.34509 * 179.97438 * 19 18 17 21 21 C 1.39515 * 122.80751 * 14.75928 * 20 19 18 22 22 C 1.33006 * 114.91118 * 179.83058 * 21 20 19 23 23 S 1.75797 * 109.99061 * 0.41418 * 22 21 20 24 24 C 1.34778 * 122.80567 * 195.04835 * 20 19 18 25 25 N 1.36270 * 107.30418 * 359.97438 * 19 18 17 26 26 N 1.31242 * 119.59733 * 180.02562 * 13 12 2 27 27 H 1.09001 * 109.47094 * 300.00451 * 1 2 3 28 28 H 1.09003 * 109.46851 * 60.00477 * 1 2 3 29 29 H 1.09003 * 109.47532 * 180.02562 * 1 2 3 30 30 H 0.97005 * 119.99651 * 179.97438 * 7 6 4 31 31 H 0.97003 * 120.00221 * 265.00067 * 12 2 1 32 32 H 1.08004 * 119.93560 * 0.02562 * 14 13 12 33 33 H 1.08001 * 120.42461 * 180.23224 * 15 14 13 34 34 H 1.08001 * 122.54497 * 0.02562 * 21 20 19 35 35 H 1.08006 * 125.00814 * 180.17960 * 22 21 20 36 36 H 1.08001 * 125.23510 * 359.96292 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1316 6 6 1.7039 -0.2359 2.4828 7 7 0.9477 0.8334 2.6033 8 14 2.3328 -1.1119 4.0080 9 1 3.6422 -0.5352 4.4055 10 1 1.3588 -0.9384 5.1155 11 1 2.4973 -2.5585 3.7156 12 7 2.0183 -0.6907 -1.1960 13 6 2.1513 0.0031 -2.3943 14 6 1.8081 1.3686 -2.4494 15 6 1.9380 2.0586 -3.6135 16 6 2.4083 1.3885 -4.7588 17 7 2.6366 1.7628 -6.0077 18 7 3.0720 0.7598 -6.6868 19 6 3.1474 -0.3103 -5.9178 20 6 3.6011 -1.6559 -6.3305 21 6 4.2891 -1.8893 -7.5216 22 6 4.6253 -3.1583 -7.7349 23 16 4.0626 -4.1609 -6.4049 24 6 3.3796 -2.7601 -5.5902 25 7 2.7297 0.0547 -4.6731 26 7 2.5890 -0.6236 -3.4610 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0277 0.0005 30 1 0.7164 1.1670 3.4843 31 1 2.2490 -1.6319 -1.1524 32 1 1.4450 1.8692 -1.5639 33 1 1.6799 3.1063 -3.6600 34 1 4.5330 -1.0990 -8.2161 35 1 5.1615 -3.5203 -8.5998 36 1 2.8622 -2.7814 -4.6424 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000302562522.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:09:26 Heat of formation + Delta-G solvation = 178.000294 kcal Electronic energy + Delta-G solvation = -22672.932930 eV Core-core repulsion = 19286.715544 eV Total energy + Delta-G solvation = -3386.217385 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 315.085 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.90008 -38.93296 -37.87630 -35.90340 -33.55553 -33.14033 -31.04526 -30.45700 -28.95521 -28.33854 -25.65476 -25.00819 -23.85873 -22.85094 -21.97873 -20.90550 -19.21024 -18.34389 -17.88386 -17.74407 -16.65403 -16.32507 -15.92495 -15.60225 -15.10029 -14.07768 -13.71373 -13.63402 -13.46366 -13.32773 -13.11642 -12.93431 -12.69227 -12.50503 -12.17057 -11.97487 -11.49328 -11.26293 -11.12659 -11.03786 -11.00163 -10.68916 -10.59970 -10.45506 -10.19248 -9.97742 -9.42377 -9.24216 -8.80208 -8.78954 -7.97969 -7.69951 -6.42695 -4.52149 0.59474 0.75034 1.47247 1.53650 1.81774 1.92911 2.40931 3.09542 3.17600 3.19231 3.23345 3.45216 3.61227 4.11759 4.15430 4.42248 4.65837 4.81140 4.91816 4.93528 5.16633 5.32516 5.44222 5.61393 5.75676 5.84230 5.87579 6.11235 6.20221 6.25058 6.31507 6.44701 6.54922 6.64002 6.92697 7.31469 7.39292 7.52079 7.74817 8.06269 8.18910 8.54737 8.60005 9.16598 10.63617 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.016278 B = 0.003381 C = 0.002883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1719.659631 B = 8279.539924 C = 9710.916946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.267 3.733 3 H 0.048 0.952 4 C -0.538 4.538 5 H 0.066 0.934 6 C 0.070 3.930 7 N -0.884 5.884 8 Si 0.906 3.094 9 H -0.278 1.278 10 H -0.283 1.283 11 H -0.272 1.272 12 N -0.666 5.666 13 C 0.420 3.580 14 C -0.155 4.155 15 C -0.011 4.011 16 C 0.129 3.871 17 N -0.262 5.262 18 N -0.256 5.256 19 C 0.245 3.755 20 C -0.028 4.028 21 C -0.100 4.100 22 C -0.220 4.220 23 S 0.117 5.883 24 C -0.175 4.175 25 N -0.259 5.259 26 N -0.374 5.374 27 H 0.098 0.902 28 H 0.015 0.985 29 H 0.036 0.964 30 H 0.268 0.732 31 H 0.404 0.596 32 H 0.166 0.834 33 H 0.166 0.834 34 H 0.152 0.848 35 H 0.169 0.831 36 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.035 -4.488 -12.562 13.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.166 3.834 3 H 0.065 0.935 4 C -0.576 4.576 5 H 0.084 0.916 6 C -0.134 4.134 7 N -0.521 5.521 8 Si 0.733 3.267 9 H -0.204 1.204 10 H -0.209 1.209 11 H -0.197 1.197 12 N -0.298 5.298 13 C 0.154 3.846 14 C -0.183 4.183 15 C -0.038 4.038 16 C -0.127 4.127 17 N -0.112 5.112 18 N -0.103 5.103 19 C -0.019 4.019 20 C -0.043 4.043 21 C -0.131 4.131 22 C -0.355 4.355 23 S 0.379 5.621 24 C -0.314 4.314 25 N -0.032 5.032 26 N -0.211 5.211 27 H 0.116 0.884 28 H 0.034 0.966 29 H 0.055 0.945 30 H 0.078 0.922 31 H 0.239 0.761 32 H 0.183 0.817 33 H 0.183 0.817 34 H 0.169 0.831 35 H 0.186 0.814 36 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 3.341 -5.792 -13.396 14.972 hybrid contribution -0.083 0.784 1.959 2.112 sum 3.258 -5.008 -11.437 12.903 Atomic orbital electron populations 1.22275 0.97781 1.00398 1.01126 1.19083 0.91295 0.93623 0.79443 0.93459 1.21091 1.33151 1.13728 0.89623 0.91593 1.24852 0.94456 0.94889 0.99177 1.69839 1.35432 1.22263 1.24527 0.86353 0.78723 0.79940 0.81647 1.20350 1.20873 1.19669 1.45639 1.65774 1.13214 1.05147 1.19558 0.87600 0.89867 0.87569 1.21730 1.02774 0.93620 1.00175 1.20309 0.94969 1.00984 0.87581 1.22363 1.08330 0.84746 0.97231 1.74781 1.16495 1.20467 0.99449 1.74760 1.16898 0.94838 1.23834 1.21756 1.05293 0.95994 0.78894 1.16414 1.03663 0.87851 0.96393 1.20005 0.99119 0.97189 0.96789 1.25414 1.09525 0.96569 1.04027 1.84226 1.53323 1.10344 1.14160 1.26090 1.05824 0.94714 1.04763 1.47098 1.40772 1.07899 1.07428 1.75565 1.36513 1.19637 0.89358 0.88394 0.96631 0.94518 0.92171 0.76053 0.81682 0.81661 0.83089 0.81353 0.80481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.15 9.18 37.16 0.34 -2.81 16 2 C 0.27 5.48 2.24 -69.09 -0.15 5.33 16 3 H 0.05 1.02 6.45 -51.93 -0.33 0.69 16 4 C -0.54 -12.49 8.73 -34.44 -0.30 -12.79 16 5 H 0.07 1.52 7.74 -52.49 -0.41 1.11 16 6 C 0.07 1.68 5.31 -17.82 -0.09 1.59 16 7 N -0.88 -21.73 11.33 55.43 0.63 -21.10 16 8 Si 0.91 18.91 29.54 -169.99 -5.02 13.89 16 9 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 10 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 11 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 12 N -0.67 -11.98 5.24 -54.82 -0.29 -12.27 16 13 C 0.42 7.28 7.73 -155.23 -1.20 6.08 16 14 C -0.16 -2.40 8.75 -39.40 -0.34 -2.74 16 15 C -0.01 -0.16 10.11 -39.44 -0.40 -0.56 16 16 C 0.13 2.25 7.99 -155.90 -1.25 1.01 16 17 N -0.26 -4.82 12.30 31.17 0.38 -4.44 16 18 N -0.26 -4.67 12.17 32.47 0.40 -4.28 16 19 C 0.25 4.30 7.90 -154.36 -1.22 3.08 16 20 C -0.03 -0.42 5.79 -106.70 -0.62 -1.04 16 21 C -0.10 -1.23 9.95 -40.92 -0.41 -1.64 16 22 C -0.22 -2.19 11.18 28.92 0.32 -1.87 16 23 S 0.12 1.22 23.32 -107.50 -2.51 -1.29 16 24 C -0.17 -2.39 10.77 29.51 0.32 -2.07 16 25 N -0.26 -4.69 4.07 -9.95 -0.04 -4.73 16 26 N -0.37 -6.66 10.63 31.33 0.33 -6.32 16 27 H 0.10 2.18 6.08 -51.93 -0.32 1.87 16 28 H 0.01 0.27 7.63 -51.93 -0.40 -0.13 16 29 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.27 6.34 8.31 -40.82 -0.34 6.00 16 31 H 0.40 6.97 8.66 -40.82 -0.35 6.62 16 32 H 0.17 2.41 6.04 -52.48 -0.32 2.09 16 33 H 0.17 1.78 8.06 -52.49 -0.42 1.36 16 34 H 0.15 1.71 8.06 -52.49 -0.42 1.28 16 35 H 0.17 1.17 8.06 -52.48 -0.42 0.74 16 36 H 0.18 2.55 6.99 -52.49 -0.37 2.19 16 LS Contribution 325.76 15.07 4.91 4.91 Total: -1.00 -26.60 325.76 -9.53 -36.12 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: -3.32 Total: 7.94 kcal Atomic # 6 Polarization: -3.43 SS G_CDS: -5.00 Total: -8.44 kcal Atomic # 7 Polarization: -54.55 SS G_CDS: 1.41 Total: -53.14 kcal Atomic # 14 Polarization: 18.91 SS G_CDS: -5.02 Total: 13.89 kcal Atomic # 16 Polarization: 1.22 SS G_CDS: -2.51 Total: -1.29 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -26.60 -9.53 -36.12 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000302562522.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 214.122 kcal (2) G-P(sol) polarization free energy of solvation -26.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 187.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.122 kcal (6) G-S(sol) free energy of system = (1) + (5) 178.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds