Wall clock time and date at job start Tue Mar 31 2020 11:09:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08994 * 109.47269 * 2 1 4 4 C 1.50702 * 109.46842 * 119.99756 * 2 1 3 5 5 H 1.08002 * 120.00299 * 120.00437 * 4 2 1 6 6 C 1.37884 * 119.99942 * 299.71996 * 4 2 1 7 7 N 1.31514 * 119.99698 * 0.28408 * 6 4 2 8 8 Si 1.86794 * 119.99837 * 180.27476 * 6 4 2 9 9 H 1.48501 * 109.47188 * 90.00793 * 8 6 4 10 10 H 1.48501 * 109.47085 * 210.00372 * 8 6 4 11 11 H 1.48498 * 109.47634 * 330.00608 * 8 6 4 12 12 N 1.46491 * 109.47168 * 239.99410 * 2 1 3 13 13 C 1.39099 * 120.00038 * 85.00695 * 12 2 1 14 14 C 1.40903 * 119.58953 * 359.71767 * 13 12 2 15 15 C 1.35944 * 120.13636 * 179.77773 * 14 13 12 16 16 C 1.40779 * 119.14276 * 0.48086 * 15 14 13 17 17 N 1.32367 * 133.68133 * 179.77641 * 16 15 14 18 18 N 1.28707 * 109.62357 * 179.97438 * 17 16 15 19 19 C 1.31996 * 110.10329 * 0.02562 * 18 17 16 20 20 C 1.47872 * 126.34509 * 179.97438 * 19 18 17 21 21 C 1.39515 * 122.80751 * 14.75928 * 20 19 18 22 22 C 1.33006 * 114.91118 * 179.83058 * 21 20 19 23 23 S 1.75797 * 109.99061 * 0.41418 * 22 21 20 24 24 C 1.34778 * 122.80567 * 195.04835 * 20 19 18 25 25 N 1.36270 * 107.30418 * 359.97438 * 19 18 17 26 26 N 1.31242 * 119.59733 * 180.02562 * 13 12 2 27 27 H 1.09001 * 109.47094 * 300.00451 * 1 2 3 28 28 H 1.09003 * 109.46851 * 60.00477 * 1 2 3 29 29 H 1.09003 * 109.47532 * 180.02562 * 1 2 3 30 30 H 0.97005 * 119.99651 * 179.97438 * 7 6 4 31 31 H 0.97003 * 120.00221 * 265.00067 * 12 2 1 32 32 H 1.08004 * 119.93560 * 0.02562 * 14 13 12 33 33 H 1.08001 * 120.42461 * 180.23224 * 15 14 13 34 34 H 1.08001 * 122.54497 * 0.02562 * 21 20 19 35 35 H 1.08006 * 125.00814 * 180.17960 * 22 21 20 36 36 H 1.08001 * 125.23510 * 359.96292 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1316 6 6 1.7039 -0.2359 2.4828 7 7 0.9477 0.8334 2.6033 8 14 2.3328 -1.1119 4.0080 9 1 3.6422 -0.5352 4.4055 10 1 1.3588 -0.9384 5.1155 11 1 2.4973 -2.5585 3.7156 12 7 2.0183 -0.6907 -1.1960 13 6 2.1513 0.0031 -2.3943 14 6 1.8081 1.3686 -2.4494 15 6 1.9380 2.0586 -3.6135 16 6 2.4083 1.3885 -4.7588 17 7 2.6366 1.7628 -6.0077 18 7 3.0720 0.7598 -6.6868 19 6 3.1474 -0.3103 -5.9178 20 6 3.6011 -1.6559 -6.3305 21 6 4.2891 -1.8893 -7.5216 22 6 4.6253 -3.1583 -7.7349 23 16 4.0626 -4.1609 -6.4049 24 6 3.3796 -2.7601 -5.5902 25 7 2.7297 0.0547 -4.6731 26 7 2.5890 -0.6236 -3.4610 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0277 0.0005 30 1 0.7164 1.1670 3.4843 31 1 2.2490 -1.6319 -1.1524 32 1 1.4450 1.8692 -1.5639 33 1 1.6799 3.1063 -3.6600 34 1 4.5330 -1.0990 -8.2161 35 1 5.1615 -3.5203 -8.5998 36 1 2.8622 -2.7814 -4.6424 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000302562522.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:09:25 Heat of formation + Delta-G solvation = 165.343920 kcal Electronic energy + Delta-G solvation = -22673.481751 eV Core-core repulsion = 19286.715544 eV Total energy + Delta-G solvation = -3386.766207 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 315.085 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -44.23033 -40.28285 -38.86790 -37.41314 -34.94025 -34.66092 -32.54003 -31.63398 -30.13718 -29.78910 -27.38584 -26.19871 -25.14094 -24.16712 -23.17284 -22.42672 -20.32676 -19.70545 -19.21791 -18.81309 -18.09520 -17.67464 -17.32771 -16.90800 -16.55034 -15.56977 -15.00248 -14.95025 -14.74993 -14.37691 -14.26566 -14.16100 -13.91747 -13.74432 -13.48708 -13.29721 -13.09253 -12.92865 -12.74493 -12.39407 -12.28083 -12.13777 -12.06704 -11.83697 -11.63446 -11.33421 -11.10163 -10.58087 -10.33297 -9.72529 -9.26444 -8.99275 -8.22936 -6.36427 -0.63459 -0.34099 0.36674 0.47814 0.66549 0.92598 1.22098 1.43977 1.47943 1.55044 2.03026 2.15548 2.21980 2.44666 2.88523 3.09940 3.19924 3.44861 3.55526 3.89699 4.07636 4.15946 4.48867 4.55678 4.58656 4.62466 4.69758 4.76513 4.93374 4.98789 5.04756 5.10109 5.24554 5.33980 5.36413 5.58527 5.76268 5.92336 6.07771 6.57086 6.62093 6.89919 7.24379 7.34876 8.82344 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.016278 B = 0.003381 C = 0.002883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1719.659631 B = 8279.539924 C = 9710.916946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.276 3.724 3 H 0.038 0.962 4 C -0.551 4.551 5 H 0.063 0.937 6 C 0.030 3.970 7 N -0.905 5.905 8 Si 0.959 3.041 9 H -0.279 1.279 10 H -0.283 1.283 11 H -0.270 1.270 12 N -0.668 5.668 13 C 0.416 3.584 14 C -0.163 4.163 15 C 0.005 3.995 16 C 0.117 3.883 17 N -0.277 5.277 18 N -0.273 5.273 19 C 0.243 3.757 20 C -0.052 4.052 21 C -0.122 4.122 22 C -0.200 4.200 23 S 0.170 5.830 24 C -0.196 4.196 25 N -0.272 5.272 26 N -0.381 5.381 27 H 0.076 0.924 28 H 0.034 0.966 29 H 0.031 0.969 30 H 0.268 0.732 31 H 0.406 0.594 32 H 0.175 0.825 33 H 0.205 0.795 34 H 0.155 0.845 35 H 0.206 0.794 36 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.680 -5.454 -13.409 14.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.174 3.826 3 H 0.056 0.944 4 C -0.589 4.589 5 H 0.081 0.919 6 C -0.172 4.172 7 N -0.543 5.543 8 Si 0.785 3.215 9 H -0.205 1.205 10 H -0.209 1.209 11 H -0.194 1.194 12 N -0.299 5.299 13 C 0.150 3.850 14 C -0.191 4.191 15 C -0.022 4.022 16 C -0.139 4.139 17 N -0.127 5.127 18 N -0.120 5.120 19 C -0.022 4.022 20 C -0.068 4.068 21 C -0.152 4.152 22 C -0.335 4.335 23 S 0.434 5.566 24 C -0.336 4.336 25 N -0.046 5.046 26 N -0.217 5.217 27 H 0.095 0.905 28 H 0.053 0.947 29 H 0.050 0.950 30 H 0.077 0.923 31 H 0.242 0.758 32 H 0.193 0.807 33 H 0.222 0.778 34 H 0.173 0.827 35 H 0.223 0.777 36 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 3.995 -6.763 -14.279 16.297 hybrid contribution -0.236 0.984 2.112 2.342 sum 3.759 -5.779 -12.167 13.984 Atomic orbital electron populations 1.22105 0.97418 0.99991 1.00968 1.18794 0.91407 0.92914 0.79510 0.94405 1.21410 1.32921 1.13741 0.90823 0.91852 1.25477 0.94784 0.95518 1.01389 1.69929 1.36277 1.23184 1.24870 0.85539 0.77980 0.79051 0.78973 1.20459 1.20891 1.19443 1.45330 1.66479 1.13210 1.04927 1.19705 0.87500 0.90680 0.87129 1.21796 1.03549 0.92836 1.00924 1.20747 0.93037 1.02464 0.85950 1.22871 1.08343 0.84905 0.97749 1.74708 1.17143 1.20898 0.99957 1.74703 1.17828 0.95201 1.24226 1.22360 1.04268 0.96919 0.78628 1.16682 1.05212 0.86938 0.97927 1.20042 1.00279 0.98463 0.96373 1.25872 1.07631 0.95545 1.04470 1.84060 1.51481 1.08020 1.13054 1.26131 1.06381 0.96347 1.04696 1.47248 1.41428 1.08291 1.07595 1.75517 1.36661 1.20026 0.89508 0.90517 0.94697 0.94976 0.92254 0.75838 0.80728 0.77801 0.82704 0.77723 0.81890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.80 9.18 71.98 0.66 -5.14 16 2 C 0.28 11.29 2.24 44.25 0.10 11.38 16 3 H 0.04 1.64 6.45 -2.39 -0.02 1.62 16 4 C -0.55 -25.51 8.73 25.60 0.22 -25.29 16 5 H 0.06 2.90 7.74 -2.91 -0.02 2.88 16 6 C 0.03 1.43 5.31 84.66 0.45 1.88 16 7 N -0.90 -44.50 11.33 21.45 0.24 -44.26 16 8 Si 0.96 38.52 29.54 68.60 2.03 40.55 16 9 H -0.28 -11.18 7.11 99.48 0.71 -10.47 16 10 H -0.28 -11.31 7.11 99.48 0.71 -10.60 16 11 H -0.27 -10.64 7.11 99.48 0.71 -9.94 16 12 N -0.67 -23.91 5.24 -327.35 -1.72 -25.62 16 13 C 0.42 14.27 7.73 133.81 1.03 15.30 16 14 C -0.16 -4.88 8.75 22.39 0.20 -4.68 16 15 C 0.00 0.13 10.11 22.36 0.23 0.36 16 16 C 0.12 4.05 7.99 134.00 1.07 5.12 16 17 N -0.28 -10.19 12.30 -55.31 -0.68 -10.87 16 18 N -0.27 -10.05 12.17 -51.18 -0.62 -10.67 16 19 C 0.24 8.60 7.90 136.43 1.08 9.68 16 20 C -0.05 -1.53 5.79 -21.21 -0.12 -1.65 16 21 C -0.12 -2.82 9.95 21.41 0.21 -2.61 16 22 C -0.20 -3.40 11.18 66.65 0.75 -2.66 16 23 S 0.17 3.16 23.32 -56.49 -1.32 1.85 16 24 C -0.20 -5.27 10.77 67.03 0.72 -4.54 16 25 N -0.27 -9.90 4.07 -185.40 -0.75 -10.65 16 26 N -0.38 -13.60 10.63 -54.80 -0.58 -14.18 16 27 H 0.08 3.42 6.08 -2.39 -0.01 3.41 16 28 H 0.03 1.21 7.63 -2.39 -0.02 1.19 16 29 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.27 12.67 8.31 -92.70 -0.77 11.90 16 31 H 0.41 14.06 8.66 -92.71 -0.80 13.25 16 32 H 0.18 4.89 6.04 -2.91 -0.02 4.87 16 33 H 0.21 3.85 8.06 -2.91 -0.02 3.82 16 34 H 0.16 3.37 8.06 -2.91 -0.02 3.35 16 35 H 0.21 1.91 8.06 -2.91 -0.02 1.89 16 36 H 0.16 4.78 6.99 -2.91 -0.02 4.76 16 Total: -1.00 -57.08 325.76 3.54 -53.54 By element: Atomic # 1 Polarization: 22.83 SS G_CDS: 0.35 Total: 23.18 kcal Atomic # 6 Polarization: -9.45 SS G_CDS: 6.60 Total: -2.86 kcal Atomic # 7 Polarization: -112.15 SS G_CDS: -4.11 Total: -116.26 kcal Atomic # 14 Polarization: 38.52 SS G_CDS: 2.03 Total: 40.55 kcal Atomic # 16 Polarization: 3.16 SS G_CDS: -1.32 Total: 1.85 kcal Total: -57.08 3.54 -53.54 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000302562522.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 218.885 kcal (2) G-P(sol) polarization free energy of solvation -57.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 161.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.541 kcal (6) G-S(sol) free energy of system = (1) + (5) 165.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds