Wall clock time and date at job start Tue Mar 31 2020 11:25:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.36030 * 116.99743 * 2 1 4 4 C 1.35476 * 120.48056 * 0.02562 * 3 2 1 5 5 O 1.33841 * 121.02048 * 179.72040 * 4 3 2 6 6 C 1.34316 * 122.03248 * 0.53060 * 5 4 3 7 7 C 1.47939 * 119.57850 * 179.75016 * 6 5 4 8 8 O 1.21534 * 119.99621 * 179.72609 * 7 6 5 9 9 N 1.34771 * 120.00244 * 359.72094 * 7 6 5 10 10 C 1.39024 * 120.00444 * 185.10242 * 9 7 6 11 11 C 1.39543 * 119.83264 * 34.49189 * 10 9 7 12 12 C 1.36341 * 120.16192 * 180.25681 * 11 10 9 13 13 C 1.40898 * 119.83194 * 359.52554 * 12 11 10 14 14 C 1.41103 * 120.16107 * 180.23268 * 13 12 11 15 15 H 1.08003 * 120.00049 * 25.63897 * 14 13 12 16 16 C 1.39944 * 119.99873 * 205.64161 * 14 13 12 17 17 N 1.30854 * 120.00428 * 16.84570 * 16 14 13 18 18 Si 1.86808 * 119.99830 * 196.84343 * 16 14 13 19 19 H 1.48493 * 109.46987 * 359.97438 * 18 16 14 20 20 H 1.48491 * 109.46999 * 120.00233 * 18 16 14 21 21 H 1.48500 * 109.46933 * 240.00010 * 18 16 14 22 22 C 1.40897 * 119.68170 * 0.49970 * 13 12 11 23 23 C 1.36338 * 119.83123 * 359.72852 * 22 13 12 24 24 C 1.35875 * 120.83532 * 359.46803 * 6 5 4 25 25 C 1.42028 * 120.47851 * 179.97438 * 3 2 1 26 26 O 1.22128 * 120.91540 * 359.97438 * 25 3 2 27 27 H 1.09002 * 109.47139 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47551 * 300.00410 * 1 2 3 29 29 H 1.09003 * 109.47083 * 60.00532 * 1 2 3 30 30 H 1.07999 * 119.48711 * 359.95185 * 4 3 2 31 31 H 0.97008 * 120.00018 * 5.10218 * 9 7 6 32 32 H 1.07992 * 119.92292 * 359.97438 * 11 10 9 33 33 H 1.08003 * 120.08468 * 179.75018 * 12 11 10 34 34 H 0.96999 * 119.99992 * 180.02562 * 17 16 14 35 35 H 1.07997 * 120.08794 * 179.70986 * 22 13 12 36 36 H 1.08004 * 119.92083 * 180.02562 * 23 22 13 37 37 H 1.08009 * 120.54974 * 180.23788 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0464 1.2121 0.0000 4 6 1.3181 2.3544 0.0005 5 8 1.9144 3.5526 0.0061 6 6 3.2512 3.6831 0.0009 7 6 3.8530 5.0346 0.0020 8 8 5.0616 5.1615 0.0023 9 7 3.0609 6.1250 0.0024 10 6 3.6225 7.3923 -0.1037 11 6 4.7637 7.5828 -0.8839 12 6 5.3231 8.8217 -0.9884 13 6 4.7402 9.9131 -0.3144 14 6 5.3105 11.1992 -0.4217 15 1 5.8986 11.4585 -1.2897 16 6 5.1142 12.1389 0.5966 17 7 4.6992 11.7498 1.7750 18 14 5.4446 13.9490 0.2736 19 1 5.9025 14.1261 -1.1279 20 1 4.1977 14.7259 0.4895 21 1 6.4969 14.4335 1.2026 22 6 3.5883 9.7130 0.4720 23 6 3.0427 8.4674 0.5710 24 6 4.0577 2.5897 0.0005 25 6 3.4641 1.2983 0.0005 26 8 4.1540 0.2906 0.0015 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 0.2396 2.2972 0.0002 31 1 2.0988 6.0256 0.0768 32 1 5.2076 6.7459 -1.4024 33 1 6.2087 8.9669 -1.5893 34 1 4.5628 12.4012 2.4806 35 1 3.1389 10.5440 0.9952 36 1 2.1595 8.3125 1.1730 37 1 5.1322 2.7000 0.0001 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339186298.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:25:34 Heat of formation + Delta-G solvation = -66.659983 kcal Electronic energy + Delta-G solvation = -24513.796374 eV Core-core repulsion = 20609.631350 eV Total energy + Delta-G solvation = -3904.165024 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.098 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.33875 -39.98483 -39.32403 -38.33472 -37.43976 -34.80644 -33.20895 -32.73327 -31.63973 -29.74069 -29.11780 -28.22396 -26.03286 -24.42337 -24.15821 -22.03400 -21.13952 -20.31246 -19.24484 -18.87486 -18.11614 -17.46173 -17.06353 -16.46755 -16.25085 -15.83179 -15.39388 -15.33271 -15.03147 -14.74109 -14.60398 -14.18333 -14.08334 -14.03686 -13.20149 -12.96406 -12.78137 -12.25551 -12.00541 -11.94643 -11.83870 -11.52022 -11.24316 -11.15918 -10.88137 -10.38423 -10.09121 -9.93204 -9.77321 -9.72374 -9.34386 -9.12029 -8.56815 -7.69792 -7.16293 -6.88744 -4.43988 0.23060 0.68358 1.85297 2.38749 2.66811 2.82585 2.97227 3.00829 3.05519 3.08295 3.22478 3.39517 3.83104 3.91231 4.10833 4.48715 4.51623 4.59075 4.65533 4.89217 5.01335 5.05876 5.27423 5.55434 5.77763 6.05540 6.24573 6.49336 6.57757 6.63845 6.80402 6.89366 7.00648 7.11513 7.41260 7.44039 7.51345 7.64823 7.88953 8.03423 8.12246 8.32095 8.48128 8.73752 8.82710 10.03004 Molecular weight = 315.10amu Principal moments of inertia in cm(-1) A = 0.039582 B = 0.002387 C = 0.002301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 707.228801 B =11729.760190 C =12167.837673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.284 6.284 3 C -0.054 4.054 4 C -0.005 4.005 5 O -0.196 6.196 6 C 0.103 3.897 7 C 0.550 3.450 8 O -0.492 6.492 9 N -0.618 5.618 10 C -0.026 4.026 11 C -0.070 4.070 12 C -0.216 4.216 13 C 0.109 3.891 14 C -0.450 4.450 15 H 0.081 0.919 16 C 0.073 3.927 17 N -0.786 5.786 18 Si 0.911 3.089 19 H -0.259 1.259 20 H -0.271 1.271 21 H -0.273 1.273 22 C -0.155 4.155 23 C -0.103 4.103 24 C -0.237 4.237 25 C 0.409 3.591 26 O -0.462 6.462 27 H 0.107 0.893 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.202 0.798 31 H 0.403 0.597 32 H 0.102 0.898 33 H 0.098 0.902 34 H 0.283 0.717 35 H 0.123 0.877 36 H 0.093 0.907 37 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.105 -12.679 -1.671 17.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.197 6.197 3 C -0.101 4.101 4 C -0.071 4.071 5 O -0.099 6.099 6 C 0.051 3.949 7 C 0.333 3.667 8 O -0.369 6.369 9 N -0.260 5.260 10 C -0.118 4.118 11 C -0.089 4.089 12 C -0.236 4.236 13 C 0.106 3.894 14 C -0.479 4.479 15 H 0.100 0.900 16 C -0.146 4.146 17 N -0.411 5.411 18 Si 0.735 3.265 19 H -0.183 1.183 20 H -0.196 1.196 21 H -0.199 1.199 22 C -0.175 4.175 23 C -0.123 4.123 24 C -0.259 4.259 25 C 0.296 3.704 26 O -0.345 6.345 27 H 0.125 0.875 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.218 0.782 31 H 0.238 0.762 32 H 0.120 0.880 33 H 0.116 0.884 34 H 0.093 0.907 35 H 0.141 0.859 36 H 0.111 0.889 37 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -11.001 -12.988 -1.440 17.082 hybrid contribution -0.714 0.641 0.133 0.969 sum -11.715 -12.347 -1.307 17.071 Atomic orbital electron populations 1.23228 0.78534 1.05024 1.01353 1.86291 1.20856 1.23759 1.88779 1.21060 0.95422 0.85968 1.07646 1.23903 0.98181 0.81239 1.03757 1.82940 1.20500 1.30724 1.75746 1.22789 0.79767 0.96694 0.95615 1.17365 0.86811 0.81766 0.80730 1.90902 1.12558 1.83858 1.49544 1.42846 1.09728 1.04832 1.68548 1.17092 1.02818 0.82341 1.09575 1.20243 0.94936 0.96843 0.96916 1.20659 1.01865 0.92260 1.08803 1.17717 0.89858 0.92339 0.89445 1.19667 1.27837 0.96065 1.04335 0.90045 1.25989 0.92804 1.01646 0.94121 1.69831 1.32801 1.36642 1.01803 0.86213 0.78903 0.81415 0.79984 1.18261 1.19599 1.19870 1.20913 0.97078 0.95548 1.03964 1.20211 0.99868 0.93182 0.99015 1.23129 1.03829 0.90743 1.08161 1.17090 0.86162 0.89876 0.77281 1.90839 1.65137 1.37980 1.40560 0.87455 0.92309 0.92318 0.78150 0.76200 0.87989 0.88393 0.90652 0.85911 0.88899 0.80357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.07 9.82 101.05 0.99 1.06 16 2 O -0.28 -3.07 10.35 -35.07 -0.36 -3.43 16 3 C -0.05 -0.61 6.72 -39.12 -0.26 -0.87 16 4 C 0.00 -0.04 10.43 29.75 0.31 0.27 16 5 O -0.20 -2.00 9.07 6.90 0.06 -1.94 16 6 C 0.10 1.35 6.90 -36.46 -0.25 1.10 16 7 C 0.55 9.06 7.51 -12.29 -0.09 8.97 16 8 O -0.49 -9.92 13.98 5.34 0.07 -9.85 16 9 N -0.62 -10.08 5.29 -10.58 -0.06 -10.14 16 10 C -0.03 -0.54 6.27 -83.63 -0.52 -1.07 16 11 C -0.07 -1.57 8.57 -39.78 -0.34 -1.91 16 12 C -0.22 -5.18 9.74 -39.26 -0.38 -5.56 16 13 C 0.11 2.77 5.57 -106.80 -0.59 2.18 16 14 C -0.45 -11.35 9.04 -37.86 -0.34 -11.69 16 15 H 0.08 1.97 7.90 -52.48 -0.41 1.56 16 16 C 0.07 1.74 5.15 -17.33 -0.09 1.65 16 17 N -0.79 -19.28 10.95 55.55 0.61 -18.68 16 18 Si 0.91 17.69 29.59 -169.99 -5.03 12.66 16 19 H -0.26 -4.99 7.11 56.52 0.40 -4.59 16 20 H -0.27 -5.15 7.11 56.52 0.40 -4.75 16 21 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 22 C -0.16 -3.75 8.63 -39.26 -0.34 -4.09 16 23 C -0.10 -2.19 9.90 -39.78 -0.39 -2.58 16 24 C -0.24 -3.26 9.56 -38.94 -0.37 -3.63 16 25 C 0.41 5.90 6.82 -36.64 -0.25 5.65 16 26 O -0.46 -8.19 17.74 -10.43 -0.19 -8.38 16 27 H 0.11 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.06 0.20 7.66 -51.93 -0.40 -0.20 16 29 H 0.06 0.20 7.67 -51.93 -0.40 -0.20 16 30 H 0.20 0.78 6.21 -52.49 -0.33 0.45 16 31 H 0.40 5.11 8.22 -40.82 -0.34 4.78 16 32 H 0.10 2.23 6.46 -52.49 -0.34 1.89 16 33 H 0.10 2.23 8.06 -52.48 -0.42 1.81 16 34 H 0.28 6.26 8.30 -40.82 -0.34 5.92 16 35 H 0.12 3.04 6.18 -52.49 -0.32 2.72 16 36 H 0.09 1.70 8.06 -52.48 -0.42 1.28 16 37 H 0.18 2.53 7.57 -52.48 -0.40 2.13 16 LS Contribution 329.32 15.07 4.96 4.96 Total: -1.00 -31.25 329.32 -6.19 -37.44 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: -3.34 Total: 7.86 kcal Atomic # 6 Polarization: -7.59 SS G_CDS: -2.93 Total: -10.52 kcal Atomic # 7 Polarization: -29.37 SS G_CDS: 0.55 Total: -28.81 kcal Atomic # 8 Polarization: -23.18 SS G_CDS: -0.41 Total: -23.59 kcal Atomic # 14 Polarization: 17.69 SS G_CDS: -5.03 Total: 12.66 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -31.25 -6.19 -37.44 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339186298.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.219 kcal (2) G-P(sol) polarization free energy of solvation -31.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds