Wall clock time and date at job start Tue Mar 31 2020 11:28:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34827 * 117.00103 * 2 1 4 4 O 1.21542 * 119.99999 * 0.02562 * 3 2 1 5 5 C 1.47109 * 120.00287 * 179.97438 * 3 2 1 6 6 C 1.36664 * 125.81235 * 180.02562 * 5 3 2 7 7 C 1.40006 * 106.92287 * 180.02562 * 6 5 3 8 8 C 1.36635 * 106.94192 * 0.25821 * 7 6 5 9 9 C 1.47228 * 125.80506 * 179.74692 * 8 7 6 10 10 O 1.21624 * 120.00334 * 359.97438 * 9 8 7 11 11 N 1.34777 * 119.99928 * 180.02562 * 9 8 7 12 12 C 1.38925 * 120.00070 * 175.79504 * 11 9 8 13 13 C 1.38722 * 120.29074 * 34.58129 * 12 11 9 14 14 C 1.38187 * 120.02853 * 180.02562 * 13 12 11 15 15 C 1.38898 * 120.62459 * 359.97438 * 14 13 12 16 16 C 1.36441 * 120.59155 * 0.02562 * 15 14 13 17 17 C 1.40751 * 119.94776 * 359.72397 * 16 15 14 18 18 C 1.41023 * 120.30796 * 180.29717 * 17 16 15 19 19 H 1.08003 * 120.00178 * 214.95569 * 18 17 16 20 20 C 1.39985 * 119.99897 * 34.95223 * 18 17 16 21 21 N 1.30835 * 120.00122 * 355.63683 * 20 18 17 22 22 Si 1.86807 * 119.99890 * 175.63933 * 20 18 17 23 23 H 1.48504 * 109.46977 * 89.99891 * 22 20 18 24 24 H 1.48492 * 109.46980 * 209.99653 * 22 20 18 25 25 H 1.48494 * 109.46880 * 330.00060 * 22 20 18 26 26 O 1.34549 * 108.39262 * 359.57394 * 8 7 6 27 27 H 1.08994 * 109.47471 * 300.00042 * 1 2 3 28 28 H 1.09009 * 109.46925 * 60.00230 * 1 2 3 29 29 H 1.09000 * 109.46983 * 179.97438 * 1 2 3 30 30 H 1.07993 * 126.53819 * 0.05362 * 6 5 3 31 31 H 1.07998 * 126.52973 * 180.02562 * 7 6 5 32 32 H 0.96998 * 120.00682 * 355.78711 * 11 9 8 33 33 H 1.08000 * 119.98199 * 0.02562 * 13 12 11 34 34 H 1.07995 * 119.68112 * 179.97438 * 14 13 12 35 35 H 1.08003 * 119.69772 * 179.97438 * 15 14 13 36 36 H 1.08001 * 120.02642 * 180.02562 * 16 15 14 37 37 H 0.96998 * 120.00321 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0641 1.2013 0.0000 4 8 1.4021 2.2207 0.0005 5 6 3.5332 1.2783 0.0006 6 6 4.2737 2.4270 0.0011 7 6 5.6203 2.0437 0.0009 8 6 5.6454 0.6776 -0.0056 9 6 6.8551 -0.1616 -0.0134 10 8 7.9551 0.3572 -0.0150 11 7 6.7434 -1.5047 -0.0200 12 6 7.8814 -2.2959 -0.1156 13 6 9.0669 -1.8914 0.4805 14 6 10.1957 -2.6823 0.3815 15 6 10.1581 -3.8855 -0.3113 16 6 9.0057 -4.3079 -0.9072 17 6 7.8400 -3.5241 -0.8174 18 6 6.6432 -3.9564 -1.4251 19 1 5.9666 -3.2349 -1.8590 20 6 6.3320 -5.3206 -1.4660 21 7 7.1897 -6.2010 -1.0176 22 14 4.6921 -5.8841 -2.1610 23 1 4.8295 -6.1256 -3.6198 24 1 4.2751 -7.1406 -1.4884 25 1 3.6685 -4.8341 -1.9273 26 8 4.3767 0.2296 0.0002 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 3.8928 3.4375 0.0020 31 1 6.4761 2.7024 0.0016 32 1 5.8686 -1.9191 0.0422 33 1 9.1076 -0.9578 1.0221 34 1 11.1158 -2.3617 0.8474 35 1 11.0493 -4.4918 -0.3796 36 1 8.9866 -5.2453 -1.4433 37 1 6.9743 -7.1463 -1.0463 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344404252.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:10 Heat of formation + Delta-G solvation = -74.427842 kcal Electronic energy + Delta-G solvation = -25067.381272 eV Core-core repulsion = 21162.879408 eV Total energy + Delta-G solvation = -3904.501864 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.098 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.95121 -40.46672 -39.55791 -37.27956 -36.83363 -34.15257 -33.69964 -33.20814 -30.95268 -29.68584 -28.73345 -27.84704 -25.48378 -24.59384 -22.64027 -21.57691 -21.16737 -20.69730 -19.73406 -18.79087 -17.84868 -17.32845 -17.11293 -17.06430 -16.29595 -16.11277 -15.26902 -14.69637 -14.42790 -14.30044 -14.07158 -13.52642 -13.46698 -13.31460 -13.22664 -13.07150 -12.71691 -12.46328 -12.35910 -11.83258 -11.33888 -11.24447 -11.20001 -11.13127 -11.04441 -10.53182 -10.34144 -10.31344 -9.91030 -9.59811 -9.30200 -9.09343 -8.99809 -7.39851 -7.07882 -6.71065 -4.52736 0.36772 1.66178 1.95553 2.58516 2.62478 2.67757 2.87325 3.02225 3.04311 3.15435 3.44933 3.64632 3.86856 4.47497 4.59281 4.60180 4.81991 4.91252 4.92826 5.21578 5.28476 5.41720 5.51952 5.62094 5.89946 6.00672 6.24322 6.41097 6.43867 6.49055 6.82924 6.95558 7.10666 7.15942 7.32477 7.54679 7.60611 7.83494 8.00148 8.02079 8.25519 8.43801 8.62081 8.75793 8.86427 10.14725 Molecular weight = 315.10amu Principal moments of inertia in cm(-1) A = 0.011335 B = 0.004517 C = 0.003292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2469.653913 B = 6197.367473 C = 8502.895802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.343 6.343 3 C 0.555 3.445 4 O -0.487 6.487 5 C -0.049 4.049 6 C -0.111 4.111 7 C -0.152 4.152 8 C -0.003 4.003 9 C 0.575 3.425 10 O -0.510 6.510 11 N -0.613 5.613 12 C 0.009 3.991 13 C -0.089 4.089 14 C -0.217 4.217 15 C -0.115 4.115 16 C -0.139 4.139 17 C 0.103 3.897 18 C -0.468 4.468 19 H 0.076 0.924 20 C 0.075 3.925 21 N -0.803 5.803 22 Si 0.912 3.088 23 H -0.269 1.269 24 H -0.277 1.277 25 H -0.261 1.261 26 O -0.137 6.137 27 H 0.066 0.934 28 H 0.067 0.933 29 H 0.107 0.893 30 H 0.171 0.829 31 H 0.173 0.827 32 H 0.410 0.590 33 H 0.111 0.889 34 H 0.093 0.907 35 H 0.091 0.909 36 H 0.132 0.868 37 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.062 8.894 1.804 13.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.259 6.259 3 C 0.400 3.600 4 O -0.376 6.376 5 C -0.101 4.101 6 C -0.131 4.131 7 C -0.173 4.173 8 C -0.058 4.058 9 C 0.360 3.640 10 O -0.389 6.389 11 N -0.253 5.253 12 C -0.084 4.084 13 C -0.108 4.108 14 C -0.237 4.237 15 C -0.134 4.134 16 C -0.159 4.159 17 C 0.099 3.901 18 C -0.499 4.499 19 H 0.094 0.906 20 C -0.142 4.142 21 N -0.430 5.430 22 Si 0.737 3.263 23 H -0.194 1.194 24 H -0.202 1.202 25 H -0.185 1.185 26 O -0.031 6.031 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.125 0.875 30 H 0.188 0.812 31 H 0.190 0.810 32 H 0.247 0.753 33 H 0.129 0.871 34 H 0.111 0.889 35 H 0.109 0.891 36 H 0.150 0.850 37 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -9.633 8.941 1.823 13.269 hybrid contribution -1.371 -0.391 -0.255 1.448 sum -11.004 8.550 1.569 14.023 Atomic orbital electron populations 1.23397 0.75120 1.04401 1.02800 1.86696 1.24136 1.31438 1.83624 1.19295 0.85373 0.82233 0.73123 1.90923 1.64273 1.35966 1.46452 1.20910 0.87993 0.86372 1.14819 1.21951 0.92054 0.98928 1.00177 1.21942 0.97798 0.93486 1.04044 1.23034 0.82404 0.94682 1.05669 1.16714 0.85319 0.82265 0.79707 1.90842 1.23847 1.73028 1.51166 1.42768 1.10809 1.04154 1.67601 1.17795 0.86577 0.96810 1.07250 1.20664 0.92362 0.98925 0.98889 1.20374 0.97318 0.97441 1.08528 1.20584 0.97561 0.95876 0.99330 1.21203 0.90689 1.01504 1.02503 1.17459 0.93484 0.89713 0.89450 1.19345 1.04448 0.92280 1.33818 0.90580 1.25864 0.98664 0.96561 0.93086 1.69744 1.34607 1.03019 1.35603 0.86232 0.81713 0.78818 0.79561 1.19424 1.20160 1.18479 1.84202 1.15136 1.34421 1.69374 0.91477 0.91467 0.87460 0.81164 0.80958 0.75298 0.87116 0.88913 0.89106 0.85006 0.90879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.30 10.57 101.05 1.07 1.37 16 2 O -0.34 -4.26 10.58 -42.27 -0.45 -4.71 16 3 C 0.56 7.33 7.95 34.33 0.27 7.60 16 4 O -0.49 -6.77 16.66 -19.30 -0.32 -7.09 16 5 C -0.05 -0.67 7.19 -36.55 -0.26 -0.93 16 6 C -0.11 -1.32 10.60 -39.49 -0.42 -1.74 16 7 C -0.15 -2.00 10.59 -39.50 -0.42 -2.42 16 8 C 0.00 -0.04 7.13 -36.51 -0.26 -0.30 16 9 C 0.58 11.01 7.64 -12.61 -0.10 10.91 16 10 O -0.51 -10.85 14.27 5.26 0.08 -10.78 16 11 N -0.61 -12.57 4.95 -10.51 -0.05 -12.62 16 12 C 0.01 0.22 6.33 -83.22 -0.53 -0.31 16 13 C -0.09 -2.05 8.68 -39.42 -0.34 -2.39 16 14 C -0.22 -4.85 10.04 -39.36 -0.39 -5.25 16 15 C -0.11 -2.62 9.96 -39.98 -0.40 -3.02 16 16 C -0.14 -3.47 8.61 -39.28 -0.34 -3.81 16 17 C 0.10 2.59 5.56 -106.64 -0.59 2.00 16 18 C -0.47 -11.56 8.22 -37.87 -0.31 -11.88 16 19 H 0.08 1.81 7.63 -52.48 -0.40 1.41 16 20 C 0.07 1.78 5.42 -17.32 -0.09 1.68 16 21 N -0.80 -19.70 10.62 55.55 0.59 -19.11 16 22 Si 0.91 17.91 29.56 -169.99 -5.03 12.88 16 23 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 24 H -0.28 -5.35 7.11 56.52 0.40 -4.95 16 25 H -0.26 -5.05 7.11 56.52 0.40 -4.64 16 26 O -0.14 -2.10 10.42 4.03 0.04 -2.06 16 27 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.07 0.51 8.14 -51.92 -0.42 0.08 16 29 H 0.11 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.17 1.56 8.06 -52.49 -0.42 1.13 16 31 H 0.17 1.96 8.06 -52.49 -0.42 1.54 16 32 H 0.41 7.88 7.86 -40.82 -0.32 7.56 16 33 H 0.11 2.50 6.19 -52.49 -0.33 2.17 16 34 H 0.09 1.84 8.06 -52.49 -0.42 1.42 16 35 H 0.09 1.84 8.06 -52.48 -0.42 1.41 16 36 H 0.13 3.39 6.15 -52.49 -0.32 3.07 16 37 H 0.28 6.30 8.30 -40.82 -0.34 5.96 16 LS Contribution 335.66 15.07 5.06 5.06 Total: -1.00 -28.69 335.66 -6.66 -35.34 By element: Atomic # 1 Polarization: 15.05 SS G_CDS: -3.46 Total: 11.58 kcal Atomic # 6 Polarization: -5.38 SS G_CDS: -3.12 Total: -8.50 kcal Atomic # 7 Polarization: -32.27 SS G_CDS: 0.54 Total: -31.73 kcal Atomic # 8 Polarization: -23.99 SS G_CDS: -0.65 Total: -24.64 kcal Atomic # 14 Polarization: 17.91 SS G_CDS: -5.03 Total: 12.88 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -28.69 -6.66 -35.34 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344404252.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.084 kcal (2) G-P(sol) polarization free energy of solvation -28.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds