Wall clock time and date at job start Tue Mar 31 2020 11:28:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34827 * 117.00103 * 2 1 4 4 O 1.21542 * 119.99999 * 0.02562 * 3 2 1 5 5 C 1.47109 * 120.00287 * 179.97438 * 3 2 1 6 6 C 1.36664 * 125.81235 * 180.02562 * 5 3 2 7 7 C 1.40006 * 106.92287 * 180.02562 * 6 5 3 8 8 C 1.36635 * 106.94192 * 0.25821 * 7 6 5 9 9 C 1.47228 * 125.80506 * 179.74692 * 8 7 6 10 10 O 1.21624 * 120.00334 * 359.97438 * 9 8 7 11 11 N 1.34777 * 119.99928 * 180.02562 * 9 8 7 12 12 C 1.38925 * 120.00070 * 175.79504 * 11 9 8 13 13 C 1.38722 * 120.29074 * 34.58129 * 12 11 9 14 14 C 1.38187 * 120.02853 * 180.02562 * 13 12 11 15 15 C 1.38898 * 120.62459 * 359.97438 * 14 13 12 16 16 C 1.36441 * 120.59155 * 0.02562 * 15 14 13 17 17 C 1.40751 * 119.94776 * 359.72397 * 16 15 14 18 18 C 1.41023 * 120.30796 * 180.29717 * 17 16 15 19 19 H 1.08003 * 120.00178 * 214.95569 * 18 17 16 20 20 C 1.39985 * 119.99897 * 34.95223 * 18 17 16 21 21 N 1.30835 * 120.00122 * 355.63683 * 20 18 17 22 22 Si 1.86807 * 119.99890 * 175.63933 * 20 18 17 23 23 H 1.48504 * 109.46977 * 89.99891 * 22 20 18 24 24 H 1.48492 * 109.46980 * 209.99653 * 22 20 18 25 25 H 1.48494 * 109.46880 * 330.00060 * 22 20 18 26 26 O 1.34549 * 108.39262 * 359.57394 * 8 7 6 27 27 H 1.08994 * 109.47471 * 300.00042 * 1 2 3 28 28 H 1.09009 * 109.46925 * 60.00230 * 1 2 3 29 29 H 1.09000 * 109.46983 * 179.97438 * 1 2 3 30 30 H 1.07993 * 126.53819 * 0.05362 * 6 5 3 31 31 H 1.07998 * 126.52973 * 180.02562 * 7 6 5 32 32 H 0.96998 * 120.00682 * 355.78711 * 11 9 8 33 33 H 1.08000 * 119.98199 * 0.02562 * 13 12 11 34 34 H 1.07995 * 119.68112 * 179.97438 * 14 13 12 35 35 H 1.08003 * 119.69772 * 179.97438 * 15 14 13 36 36 H 1.08001 * 120.02642 * 180.02562 * 16 15 14 37 37 H 0.96998 * 120.00321 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0641 1.2013 0.0000 4 8 1.4021 2.2207 0.0005 5 6 3.5332 1.2783 0.0006 6 6 4.2737 2.4270 0.0011 7 6 5.6203 2.0437 0.0009 8 6 5.6454 0.6776 -0.0056 9 6 6.8551 -0.1616 -0.0134 10 8 7.9551 0.3572 -0.0150 11 7 6.7434 -1.5047 -0.0200 12 6 7.8814 -2.2959 -0.1156 13 6 9.0669 -1.8914 0.4805 14 6 10.1957 -2.6823 0.3815 15 6 10.1581 -3.8855 -0.3113 16 6 9.0057 -4.3079 -0.9072 17 6 7.8400 -3.5241 -0.8174 18 6 6.6432 -3.9564 -1.4251 19 1 5.9666 -3.2349 -1.8590 20 6 6.3320 -5.3206 -1.4660 21 7 7.1897 -6.2010 -1.0176 22 14 4.6921 -5.8841 -2.1610 23 1 4.8295 -6.1256 -3.6198 24 1 4.2751 -7.1406 -1.4884 25 1 3.6685 -4.8341 -1.9273 26 8 4.3767 0.2296 0.0002 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 3.8928 3.4375 0.0020 31 1 6.4761 2.7024 0.0016 32 1 5.8686 -1.9191 0.0422 33 1 9.1076 -0.9578 1.0221 34 1 11.1158 -2.3617 0.8474 35 1 11.0493 -4.4918 -0.3796 36 1 8.9866 -5.2453 -1.4433 37 1 6.9743 -7.1463 -1.0463 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344404252.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:09 Heat of formation + Delta-G solvation = -90.093936 kcal Electronic energy + Delta-G solvation = -25068.060605 eV Core-core repulsion = 21162.879408 eV Total energy + Delta-G solvation = -3905.181197 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.098 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -44.06845 -41.48556 -41.12358 -39.01212 -37.79330 -35.75185 -35.50134 -34.34630 -32.14233 -31.50738 -30.28855 -28.76733 -27.20937 -25.86401 -23.88958 -23.08831 -22.53487 -22.08338 -21.20790 -19.95822 -19.32145 -18.89768 -18.16777 -18.12510 -17.97361 -17.18584 -16.95836 -16.15281 -15.98800 -15.81706 -15.23374 -14.81342 -14.68967 -14.41882 -14.36011 -14.34183 -14.24120 -14.03980 -13.63084 -13.16560 -13.05251 -12.87220 -12.77420 -12.22715 -12.13910 -12.06297 -11.95274 -11.66072 -11.34522 -11.27141 -11.06458 -10.82457 -10.14562 -9.25625 -8.86450 -8.48752 -6.39617 -0.76702 0.49522 0.90865 0.94949 1.10088 1.40980 1.49486 1.55414 1.59033 1.62359 1.99437 2.21374 2.23287 2.78880 3.38749 3.60080 3.65591 3.75238 4.17167 4.25077 4.25457 4.31163 4.50362 4.61615 4.65670 4.69411 4.74729 4.98789 5.00495 5.05718 5.16076 5.27464 5.38157 5.42322 5.74669 5.81611 6.07071 6.16135 6.22689 6.35501 6.53021 6.65766 6.90033 6.93560 7.10378 8.38952 Molecular weight = 315.10amu Principal moments of inertia in cm(-1) A = 0.011335 B = 0.004517 C = 0.003292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2469.653913 B = 6197.367473 C = 8502.895802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.358 6.358 3 C 0.558 3.442 4 O -0.495 6.495 5 C -0.054 4.054 6 C -0.096 4.096 7 C -0.126 4.126 8 C -0.034 4.034 9 C 0.582 3.418 10 O -0.535 6.535 11 N -0.619 5.619 12 C 0.006 3.994 13 C -0.101 4.101 14 C -0.216 4.216 15 C -0.118 4.118 16 C -0.162 4.162 17 C 0.073 3.927 18 C -0.491 4.491 19 H 0.075 0.925 20 C 0.036 3.964 21 N -0.832 5.832 22 Si 0.980 3.020 23 H -0.266 1.266 24 H -0.270 1.270 25 H -0.256 1.256 26 O -0.151 6.151 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.130 0.870 30 H 0.204 0.796 31 H 0.192 0.808 32 H 0.414 0.586 33 H 0.116 0.884 34 H 0.121 0.879 35 H 0.116 0.884 36 H 0.118 0.882 37 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.535 10.221 1.906 15.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.274 6.274 3 C 0.403 3.597 4 O -0.385 6.385 5 C -0.106 4.106 6 C -0.115 4.115 7 C -0.147 4.147 8 C -0.088 4.088 9 C 0.369 3.631 10 O -0.415 6.415 11 N -0.260 5.260 12 C -0.088 4.088 13 C -0.121 4.121 14 C -0.235 4.235 15 C -0.137 4.137 16 C -0.182 4.182 17 C 0.069 3.931 18 C -0.522 4.522 19 H 0.093 0.907 20 C -0.178 4.178 21 N -0.459 5.459 22 Si 0.801 3.199 23 H -0.191 1.191 24 H -0.194 1.194 25 H -0.180 1.180 26 O -0.046 6.046 27 H 0.094 0.906 28 H 0.092 0.908 29 H 0.148 0.852 30 H 0.221 0.779 31 H 0.210 0.790 32 H 0.251 0.749 33 H 0.133 0.867 34 H 0.139 0.861 35 H 0.134 0.866 36 H 0.135 0.865 37 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -11.111 10.277 1.932 15.258 hybrid contribution -0.961 -0.698 -0.245 1.213 sum -12.072 9.579 1.687 15.503 Atomic orbital electron populations 1.23748 0.72897 1.06276 1.03594 1.86684 1.26421 1.31078 1.83227 1.19226 0.85168 0.82411 0.72921 1.90917 1.64353 1.36214 1.47010 1.21331 0.88377 0.86615 1.14266 1.22315 0.90957 0.99837 0.98417 1.22270 0.99103 0.92311 1.00979 1.22441 0.81820 0.94990 1.09576 1.16975 0.86271 0.81734 0.78134 1.90807 1.25295 1.73388 1.52050 1.42761 1.10134 1.04738 1.68406 1.17945 0.87722 0.96708 1.06451 1.20867 0.92687 0.99348 0.99229 1.20723 0.98190 0.96869 1.07749 1.20835 0.97785 0.96359 0.98726 1.21215 0.91738 1.01498 1.03775 1.17776 0.94024 0.90765 0.90500 1.19502 1.04660 0.93110 1.34886 0.90665 1.26663 1.01921 0.96192 0.92997 1.69815 1.36293 1.03491 1.36332 0.85216 0.77446 0.78466 0.78773 1.19084 1.19412 1.17961 1.84162 1.15063 1.35322 1.70084 0.90607 0.90771 0.85166 0.77927 0.79030 0.74916 0.86655 0.86076 0.86625 0.86456 0.90327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 10.57 113.37 1.20 1.59 16 2 O -0.36 -8.37 10.58 -56.02 -0.59 -8.97 16 3 C 0.56 13.74 7.95 70.15 0.56 14.30 16 4 O -0.49 -12.67 16.66 19.70 0.33 -12.34 16 5 C -0.05 -1.38 7.19 24.23 0.17 -1.21 16 6 C -0.10 -1.99 10.60 22.33 0.24 -1.75 16 7 C -0.13 -3.02 10.59 22.32 0.24 -2.79 16 8 C -0.03 -1.05 7.13 24.26 0.17 -0.87 16 9 C 0.58 22.39 7.64 86.61 0.66 23.05 16 10 O -0.54 -22.77 14.27 -4.11 -0.06 -22.83 16 11 N -0.62 -26.00 4.95 -305.40 -1.51 -27.51 16 12 C 0.01 0.28 6.33 38.94 0.25 0.53 16 13 C -0.10 -4.72 8.68 22.37 0.19 -4.53 16 14 C -0.22 -9.53 10.04 22.42 0.22 -9.31 16 15 C -0.12 -5.42 9.96 22.01 0.22 -5.20 16 16 C -0.16 -8.33 8.61 22.46 0.19 -8.14 16 17 C 0.07 3.80 5.56 -21.17 -0.12 3.68 16 18 C -0.49 -24.94 8.22 23.38 0.19 -24.75 16 19 H 0.08 3.69 7.63 -2.91 -0.02 3.67 16 20 C 0.04 1.73 5.42 85.26 0.46 2.19 16 21 N -0.83 -41.72 10.62 21.84 0.23 -41.49 16 22 Si 0.98 36.78 29.56 68.60 2.03 38.81 16 23 H -0.27 -9.78 7.11 99.48 0.71 -9.07 16 24 H -0.27 -9.72 7.11 99.48 0.71 -9.01 16 25 H -0.26 -9.30 7.11 99.48 0.71 -8.59 16 26 O -0.15 -4.53 10.42 -7.50 -0.08 -4.61 16 27 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.07 0.97 8.14 -2.38 -0.02 0.95 16 29 H 0.13 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.20 2.84 8.06 -2.91 -0.02 2.81 16 31 H 0.19 3.79 8.06 -2.91 -0.02 3.77 16 32 H 0.41 16.42 7.86 -92.71 -0.73 15.69 16 33 H 0.12 5.21 6.19 -2.91 -0.02 5.19 16 34 H 0.12 4.58 8.06 -2.91 -0.02 4.55 16 35 H 0.12 4.59 8.06 -2.91 -0.02 4.57 16 36 H 0.12 6.28 6.15 -2.91 -0.02 6.26 16 37 H 0.29 13.07 8.30 -92.71 -0.77 12.30 16 Total: -1.00 -62.52 335.66 5.61 -56.91 By element: Atomic # 1 Polarization: 34.82 SS G_CDS: 0.41 Total: 35.24 kcal Atomic # 6 Polarization: -18.06 SS G_CDS: 4.85 Total: -13.21 kcal Atomic # 7 Polarization: -67.72 SS G_CDS: -1.28 Total: -69.00 kcal Atomic # 8 Polarization: -48.34 SS G_CDS: -0.40 Total: -48.74 kcal Atomic # 14 Polarization: 36.78 SS G_CDS: 2.03 Total: 38.81 kcal Total: -62.52 5.61 -56.91 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344404252.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.187 kcal (2) G-P(sol) polarization free energy of solvation -62.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds