Wall clock time and date at job start Tue Mar 31 2020 10:36:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47041 * 2 1 4 4 C 1.50699 * 109.47272 * 119.99933 * 2 1 3 5 5 N 1.29423 * 125.69536 * 299.95775 * 4 2 1 6 6 N 1.26394 * 116.47809 * 180.02562 * 5 4 2 7 7 C 1.29424 * 116.47211 * 0.02562 * 6 5 4 8 8 C 1.50703 * 125.69404 * 179.97438 * 7 6 5 9 9 C 1.53006 * 109.46818 * 90.02346 * 8 7 6 10 10 N 1.46499 * 109.46858 * 180.02562 * 9 8 7 11 11 C 1.34777 * 119.99991 * 180.02562 * 10 9 8 12 12 O 1.21281 * 120.00026 * 359.97438 * 11 10 9 13 13 C 1.50697 * 119.99952 * 180.02562 * 11 10 9 14 14 S 1.81002 * 109.46969 * 179.97438 * 13 11 10 15 15 C 1.76202 * 100.00072 * 179.97438 * 14 13 11 16 16 H 1.08002 * 119.99603 * 0.02562 * 15 14 13 17 17 C 1.38793 * 119.99979 * 179.97438 * 15 14 13 18 18 N 1.31628 * 120.00135 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 119.99989 * 180.02562 * 17 15 14 20 20 H 1.48505 * 109.47190 * 60.00082 * 19 17 15 21 21 H 1.48500 * 109.47492 * 179.97438 * 19 17 15 22 22 H 1.48507 * 109.47359 * 300.00068 * 19 17 15 23 23 S 1.71209 * 108.60774 * 359.97438 * 7 6 5 24 24 H 1.08996 * 109.47407 * 60.00682 * 1 2 3 25 25 H 1.09004 * 109.46782 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47156 * 299.99776 * 1 2 3 27 27 H 1.09004 * 109.47318 * 239.99931 * 2 1 3 28 28 H 1.09001 * 109.47243 * 180.02562 * 3 2 1 29 29 H 1.09009 * 109.47091 * 299.99929 * 3 2 1 30 30 H 1.08998 * 109.47787 * 59.99710 * 3 2 1 31 31 H 1.09000 * 109.46941 * 210.02256 * 8 7 6 32 32 H 1.09000 * 109.47019 * 330.02828 * 8 7 6 33 33 H 1.08998 * 109.47178 * 300.00225 * 9 8 7 34 34 H 1.08995 * 109.46909 * 59.99933 * 9 8 7 35 35 H 0.97005 * 120.00282 * 359.97438 * 10 9 8 36 36 H 1.09000 * 109.46675 * 299.99295 * 13 11 10 37 37 H 1.08995 * 109.47699 * 59.99639 * 13 11 10 38 38 H 0.97003 * 120.00069 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2305 5 7 1.7892 -0.3652 2.4539 6 7 2.3009 -1.0881 3.3557 7 6 3.0116 -2.0930 2.9555 8 6 3.7136 -3.0841 3.8476 9 6 2.7738 -4.2530 4.1500 10 7 3.4560 -5.2163 5.0177 11 6 2.8174 -6.3341 5.4167 12 8 1.6778 -6.5423 5.0578 13 6 3.5191 -7.3246 6.3098 14 16 2.4073 -8.7074 6.6674 15 6 3.4533 -9.6827 7.6968 16 1 4.4550 -9.3470 7.9212 17 6 2.9896 -10.8817 8.2199 18 7 1.7686 -11.2905 7.9468 19 14 4.0983 -11.9152 9.3117 20 1 4.4871 -11.1278 10.5093 21 1 3.3720 -13.1382 9.7386 22 1 5.3170 -12.3011 8.5559 23 16 3.0209 -2.1083 1.2435 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8934 -0.5139 -0.8900 28 1 3.1300 1.4425 -0.0005 29 1 1.6766 1.9563 -0.8901 30 1 1.6766 1.9564 0.8899 31 1 4.6064 -3.4564 3.3452 32 1 3.9980 -2.5961 4.7798 33 1 1.8809 -3.8808 4.6524 34 1 2.4893 -4.7410 3.2178 35 1 4.3677 -5.0499 5.3045 36 1 4.4125 -7.6966 5.8083 37 1 3.8024 -6.8362 7.2421 38 1 1.4444 -12.1283 8.3127 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345615737.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:36:31 Heat of formation + Delta-G solvation = 6.010452 kcal Electronic energy + Delta-G solvation = -20030.063174 eV Core-core repulsion = 16739.538950 eV Total energy + Delta-G solvation = -3290.524224 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 315.082 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.69215 -39.24217 -36.62351 -35.47683 -32.71714 -32.43394 -30.07914 -28.68740 -27.67921 -26.44680 -25.48217 -23.72449 -22.47151 -20.57679 -19.76674 -19.23789 -17.85857 -16.51936 -16.39206 -16.11693 -15.65088 -15.56331 -14.99745 -14.80843 -14.46327 -14.09170 -13.87741 -13.67963 -13.44390 -13.21984 -12.68236 -12.57055 -12.42008 -12.39429 -12.10558 -11.77646 -11.71835 -11.56102 -11.05500 -11.04243 -10.79183 -10.75178 -10.45809 -10.08355 -9.98214 -9.83085 -9.46761 -9.07712 -8.98860 -8.25354 -6.51245 -6.22100 -3.93133 0.04423 0.50566 0.98209 2.20383 2.94637 3.04710 3.23143 3.25702 3.28917 3.48292 3.69504 4.09434 4.19761 4.25490 4.47439 4.50892 4.54505 4.65724 4.92302 5.01381 5.12755 5.12965 5.15555 5.19971 5.30832 5.34049 5.43966 5.56021 5.60388 5.71562 5.78864 5.79347 5.86956 6.11451 6.48323 7.58340 7.61714 8.22001 8.34295 8.54837 9.22981 10.85250 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.047401 B = 0.001912 C = 0.001880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.559574 B =14639.090178 C =14891.956563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.012 4.012 3 C -0.142 4.142 4 C -0.013 4.013 5 N -0.255 5.255 6 N -0.252 5.252 7 C -0.012 4.012 8 C -0.051 4.051 9 C 0.128 3.872 10 N -0.739 5.739 11 C 0.533 3.467 12 O -0.515 6.515 13 C -0.153 4.153 14 S -0.060 6.060 15 C -0.537 4.537 16 H 0.072 0.928 17 C 0.074 3.926 18 N -0.868 5.868 19 Si 0.919 3.081 20 H -0.274 1.274 21 H -0.283 1.283 22 H -0.274 1.274 23 S 0.172 5.828 24 H 0.070 0.930 25 H 0.059 0.941 26 H 0.068 0.932 27 H 0.093 0.907 28 H 0.056 0.944 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.098 0.902 32 H 0.108 0.892 33 H 0.074 0.926 34 H 0.069 0.931 35 H 0.400 0.600 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.723 23.565 -17.622 29.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.035 4.035 3 C -0.200 4.200 4 C -0.292 4.292 5 N -0.092 5.092 6 N -0.090 5.090 7 C -0.291 4.291 8 C -0.093 4.093 9 C 0.002 3.998 10 N -0.394 5.394 11 C 0.319 3.681 12 O -0.389 6.389 13 C -0.304 4.304 14 S 0.167 5.833 15 C -0.685 4.685 16 H 0.091 0.909 17 C -0.136 4.136 18 N -0.503 5.503 19 Si 0.745 3.255 20 H -0.199 1.199 21 H -0.208 1.208 22 H -0.199 1.199 23 S 0.418 5.582 24 H 0.089 0.911 25 H 0.078 0.922 26 H 0.087 0.913 27 H 0.111 0.889 28 H 0.076 0.924 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.116 0.884 32 H 0.126 0.874 33 H 0.093 0.907 34 H 0.087 0.913 35 H 0.234 0.766 36 H 0.109 0.891 37 H 0.109 0.891 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 3.525 23.267 -17.930 29.585 hybrid contribution 2.462 -0.322 1.355 2.829 sum 5.987 22.946 -16.574 28.932 Atomic orbital electron populations 1.21844 0.92304 1.02791 1.03262 1.19796 0.97284 0.96096 0.90285 1.21834 1.01208 0.93734 1.03272 1.29323 1.01680 0.98722 0.99447 1.71378 1.18545 1.23060 0.96219 1.71487 1.08042 1.02616 1.26824 1.28892 1.02960 1.00699 0.96544 1.20375 0.97486 0.92471 0.98975 1.21169 0.95244 0.87890 0.95469 1.45918 1.18109 1.22384 1.53033 1.20336 0.86572 0.81017 0.80175 1.90716 1.17689 1.75261 1.55186 1.23529 1.04754 1.01194 1.00892 1.85423 1.18269 1.15442 1.64204 1.22825 1.01904 1.08484 1.35267 0.90936 1.24992 0.95528 0.96748 0.96308 1.70007 1.15673 1.21827 1.42759 0.86220 0.79972 0.79074 0.80199 1.19935 1.20807 1.19939 1.83785 1.44974 1.24794 1.04626 0.91149 0.92233 0.91252 0.88902 0.92439 0.91168 0.91274 0.88403 0.87409 0.90725 0.91263 0.76599 0.89097 0.89069 0.92109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.85 9.18 37.16 0.34 -0.50 16 2 C -0.01 -0.07 3.37 -91.77 -0.31 -0.38 16 3 C -0.14 -0.74 9.17 37.16 0.34 -0.40 16 4 C -0.01 -0.12 6.04 -13.29 -0.08 -0.20 16 5 N -0.26 -3.04 11.66 32.58 0.38 -2.66 16 6 N -0.25 -3.17 11.66 32.58 0.38 -2.79 16 7 C -0.01 -0.11 6.78 -13.29 -0.09 -0.20 16 8 C -0.05 -0.41 5.93 -27.88 -0.17 -0.57 16 9 C 0.13 1.46 5.66 -4.04 -0.02 1.43 16 10 N -0.74 -9.27 5.56 -60.30 -0.33 -9.60 16 11 C 0.53 9.75 7.85 -10.99 -0.09 9.66 16 12 O -0.51 -11.69 15.86 5.56 0.09 -11.60 16 13 C -0.15 -3.02 6.16 36.00 0.22 -2.80 16 14 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 15 C -0.54 -15.20 9.50 30.94 0.29 -14.91 16 16 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 17 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 18 N -0.87 -26.12 13.22 55.49 0.73 -25.39 16 19 Si 0.92 21.31 29.55 -169.99 -5.02 16.28 16 20 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 21 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 22 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 23 S 0.17 1.33 23.04 -107.50 -2.48 -1.15 16 24 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 25 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 26 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.07 0.24 8.14 -51.92 -0.42 -0.18 16 30 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.11 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 35 H 0.40 3.58 8.47 -40.82 -0.35 3.24 16 36 H 0.09 1.63 8.14 -51.92 -0.42 1.20 16 37 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 38 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 357.99 15.07 5.39 5.39 Total: -1.00 -36.30 357.99 -8.11 -44.41 By element: Atomic # 1 Polarization: 3.20 SS G_CDS: -5.39 Total: -2.19 kcal Atomic # 6 Polarization: -7.22 SS G_CDS: 0.35 Total: -6.87 kcal Atomic # 7 Polarization: -41.60 SS G_CDS: 1.16 Total: -40.45 kcal Atomic # 8 Polarization: -11.69 SS G_CDS: 0.09 Total: -11.60 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.28 kcal Atomic # 16 Polarization: -0.29 SS G_CDS: -4.69 Total: -4.98 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -36.30 -8.11 -44.41 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345615737.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.424 kcal (2) G-P(sol) polarization free energy of solvation -36.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.414 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds