Wall clock time and date at job start Tue Mar 31 2020 10:36:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47041 * 2 1 4 4 C 1.50699 * 109.47272 * 119.99933 * 2 1 3 5 5 N 1.29423 * 125.69536 * 299.95775 * 4 2 1 6 6 N 1.26394 * 116.47809 * 180.02562 * 5 4 2 7 7 C 1.29424 * 116.47211 * 0.02562 * 6 5 4 8 8 C 1.50703 * 125.69404 * 179.97438 * 7 6 5 9 9 C 1.53006 * 109.46818 * 90.02346 * 8 7 6 10 10 N 1.46499 * 109.46858 * 180.02562 * 9 8 7 11 11 C 1.34777 * 119.99991 * 180.02562 * 10 9 8 12 12 O 1.21281 * 120.00026 * 359.97438 * 11 10 9 13 13 C 1.50697 * 119.99952 * 180.02562 * 11 10 9 14 14 S 1.81002 * 109.46969 * 179.97438 * 13 11 10 15 15 C 1.76202 * 100.00072 * 179.97438 * 14 13 11 16 16 H 1.08002 * 119.99603 * 0.02562 * 15 14 13 17 17 C 1.38793 * 119.99979 * 179.97438 * 15 14 13 18 18 N 1.31628 * 120.00135 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 119.99989 * 180.02562 * 17 15 14 20 20 H 1.48505 * 109.47190 * 60.00082 * 19 17 15 21 21 H 1.48500 * 109.47492 * 179.97438 * 19 17 15 22 22 H 1.48507 * 109.47359 * 300.00068 * 19 17 15 23 23 S 1.71209 * 108.60774 * 359.97438 * 7 6 5 24 24 H 1.08996 * 109.47407 * 60.00682 * 1 2 3 25 25 H 1.09004 * 109.46782 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47156 * 299.99776 * 1 2 3 27 27 H 1.09004 * 109.47318 * 239.99931 * 2 1 3 28 28 H 1.09001 * 109.47243 * 180.02562 * 3 2 1 29 29 H 1.09009 * 109.47091 * 299.99929 * 3 2 1 30 30 H 1.08998 * 109.47787 * 59.99710 * 3 2 1 31 31 H 1.09000 * 109.46941 * 210.02256 * 8 7 6 32 32 H 1.09000 * 109.47019 * 330.02828 * 8 7 6 33 33 H 1.08998 * 109.47178 * 300.00225 * 9 8 7 34 34 H 1.08995 * 109.46909 * 59.99933 * 9 8 7 35 35 H 0.97005 * 120.00282 * 359.97438 * 10 9 8 36 36 H 1.09000 * 109.46675 * 299.99295 * 13 11 10 37 37 H 1.08995 * 109.47699 * 59.99639 * 13 11 10 38 38 H 0.97003 * 120.00069 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2305 5 7 1.7892 -0.3652 2.4539 6 7 2.3009 -1.0881 3.3557 7 6 3.0116 -2.0930 2.9555 8 6 3.7136 -3.0841 3.8476 9 6 2.7738 -4.2530 4.1500 10 7 3.4560 -5.2163 5.0177 11 6 2.8174 -6.3341 5.4167 12 8 1.6778 -6.5423 5.0578 13 6 3.5191 -7.3246 6.3098 14 16 2.4073 -8.7074 6.6674 15 6 3.4533 -9.6827 7.6968 16 1 4.4550 -9.3470 7.9212 17 6 2.9896 -10.8817 8.2199 18 7 1.7686 -11.2905 7.9468 19 14 4.0983 -11.9152 9.3117 20 1 4.4871 -11.1278 10.5093 21 1 3.3720 -13.1382 9.7386 22 1 5.3170 -12.3011 8.5559 23 16 3.0209 -2.1083 1.2435 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8934 -0.5139 -0.8900 28 1 3.1300 1.4425 -0.0005 29 1 1.6766 1.9563 -0.8901 30 1 1.6766 1.9564 0.8899 31 1 4.6064 -3.4564 3.3452 32 1 3.9980 -2.5961 4.7798 33 1 1.8809 -3.8808 4.6524 34 1 2.4893 -4.7410 3.2178 35 1 4.3677 -5.0499 5.3045 36 1 4.4125 -7.6966 5.8083 37 1 3.8024 -6.8362 7.2421 38 1 1.4444 -12.1283 8.3127 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345615737.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:36:30 Heat of formation + Delta-G solvation = -20.420538 kcal Electronic energy + Delta-G solvation = -20031.209308 eV Core-core repulsion = 16739.538950 eV Total energy + Delta-G solvation = -3291.670358 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 315.082 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.44076 -40.64877 -37.28803 -36.44274 -34.57580 -33.71924 -31.28322 -29.74810 -28.11286 -27.70580 -27.17564 -24.57598 -23.12492 -21.91633 -20.46744 -20.07444 -19.69317 -17.84023 -17.53441 -16.88703 -16.86857 -16.64859 -16.61584 -15.93356 -15.51910 -15.38249 -14.77930 -14.76820 -14.45055 -14.16671 -14.09786 -13.62740 -13.32766 -13.16103 -13.04545 -12.86992 -12.79541 -12.62297 -12.54682 -12.24033 -12.14256 -11.74764 -11.46538 -11.12915 -11.11882 -11.05215 -10.72188 -10.68451 -10.26765 -10.20908 -8.66203 -8.33528 -6.11911 -0.63589 -0.13580 0.28911 1.26258 1.42745 1.44961 1.49260 1.57587 1.58663 2.19069 2.28803 2.91322 3.00634 3.31279 3.45211 3.68116 3.76137 3.90765 4.01411 4.05872 4.10195 4.16449 4.33104 4.45806 4.53004 4.55025 4.75772 4.78654 4.84900 4.86569 4.88836 5.03874 5.28078 5.31896 5.33362 5.42817 6.20682 6.47150 7.07671 7.21560 7.49118 8.75397 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.047401 B = 0.001912 C = 0.001880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.559574 B =14639.090178 C =14891.956563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.015 4.015 3 C -0.138 4.138 4 C -0.018 4.018 5 N -0.292 5.292 6 N -0.290 5.290 7 C -0.028 4.028 8 C -0.041 4.041 9 C 0.131 3.869 10 N -0.709 5.709 11 C 0.534 3.466 12 O -0.567 6.567 13 C -0.128 4.128 14 S -0.156 6.156 15 C -0.546 4.546 16 H 0.085 0.915 17 C 0.012 3.988 18 N -0.912 5.912 19 Si 0.999 3.001 20 H -0.262 1.262 21 H -0.280 1.280 22 H -0.261 1.261 23 S 0.228 5.772 24 H 0.093 0.907 25 H 0.052 0.948 26 H 0.048 0.952 27 H 0.119 0.881 28 H 0.059 0.941 29 H 0.092 0.908 30 H 0.049 0.951 31 H 0.133 0.867 32 H 0.118 0.882 33 H 0.050 0.950 34 H 0.065 0.935 35 H 0.422 0.578 36 H 0.116 0.884 37 H 0.112 0.888 38 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.581 24.223 -18.594 31.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.038 4.038 3 C -0.197 4.197 4 C -0.297 4.297 5 N -0.129 5.129 6 N -0.128 5.128 7 C -0.308 4.308 8 C -0.082 4.082 9 C 0.005 3.995 10 N -0.364 5.364 11 C 0.320 3.680 12 O -0.445 6.445 13 C -0.280 4.280 14 S 0.071 5.929 15 C -0.694 4.694 16 H 0.103 0.897 17 C -0.192 4.192 18 N -0.548 5.548 19 Si 0.820 3.180 20 H -0.187 1.187 21 H -0.205 1.205 22 H -0.185 1.185 23 S 0.474 5.526 24 H 0.112 0.888 25 H 0.071 0.929 26 H 0.068 0.932 27 H 0.137 0.863 28 H 0.078 0.922 29 H 0.110 0.890 30 H 0.068 0.932 31 H 0.151 0.849 32 H 0.136 0.864 33 H 0.068 0.932 34 H 0.084 0.916 35 H 0.260 0.740 36 H 0.134 0.866 37 H 0.130 0.870 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 6.441 23.976 -18.911 31.208 hybrid contribution 1.583 -0.398 1.530 2.237 sum 8.023 23.578 -17.381 30.371 Atomic orbital electron populations 1.21838 0.92394 1.02396 1.03421 1.20044 0.97213 0.96601 0.89900 1.21817 1.01297 0.93211 1.03386 1.29871 1.01112 0.99186 0.99533 1.71339 1.19996 1.24231 0.97341 1.71444 1.09288 1.03941 1.28125 1.29151 1.02749 1.00506 0.98346 1.20372 0.97326 0.90642 0.99852 1.21172 0.95352 0.88508 0.94467 1.45566 1.18747 1.20449 1.51643 1.20116 0.85881 0.82061 0.79918 1.90707 1.19911 1.76655 1.57255 1.23367 1.03417 0.98599 1.02571 1.85633 1.22611 1.19735 1.64905 1.23180 1.02235 1.08814 1.35135 0.89688 1.26140 0.97089 0.98195 0.97819 1.70183 1.17936 1.22448 1.44272 0.84998 0.77852 0.76961 0.78146 1.18703 1.20545 1.18511 1.83513 1.43563 1.23204 1.02308 0.88828 0.92887 0.93249 0.86306 0.92236 0.88969 0.93225 0.84931 0.86406 0.93198 0.91644 0.73966 0.86598 0.86969 0.92037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.55 9.18 71.98 0.66 -0.89 16 2 C -0.02 -0.16 3.37 -11.54 -0.04 -0.20 16 3 C -0.14 -1.26 9.17 71.98 0.66 -0.60 16 4 C -0.02 -0.31 6.04 88.46 0.53 0.23 16 5 N -0.29 -7.05 11.66 -50.85 -0.59 -7.64 16 6 N -0.29 -7.30 11.66 -50.85 -0.59 -7.89 16 7 C -0.03 -0.51 6.78 88.46 0.60 0.09 16 8 C -0.04 -0.55 5.93 29.85 0.18 -0.37 16 9 C 0.13 2.81 5.66 86.38 0.49 3.29 16 10 N -0.71 -16.24 5.56 -463.06 -2.57 -18.82 16 11 C 0.53 19.10 7.85 87.66 0.69 19.79 16 12 O -0.57 -26.29 15.86 -3.03 -0.05 -26.34 16 13 C -0.13 -4.89 6.16 71.24 0.44 -4.45 16 14 S -0.16 -8.61 20.57 -56.49 -1.16 -9.77 16 15 C -0.55 -30.86 9.50 67.95 0.65 -30.21 16 16 H 0.09 4.41 7.80 -2.91 -0.02 4.39 16 17 C 0.01 0.69 5.49 84.86 0.47 1.16 16 18 N -0.91 -56.03 13.22 21.65 0.29 -55.75 16 19 Si 1.00 43.25 29.55 68.60 2.03 45.27 16 20 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 21 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 22 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 23 S 0.23 3.05 23.04 -56.49 -1.30 1.75 16 24 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 25 H 0.05 0.64 8.14 -2.38 -0.02 0.62 16 26 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 27 H 0.12 0.62 8.14 -2.39 -0.02 0.60 16 28 H 0.06 0.51 8.14 -2.39 -0.02 0.50 16 29 H 0.09 0.43 8.14 -2.38 -0.02 0.41 16 30 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.13 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.12 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.42 6.03 8.47 -92.70 -0.79 5.24 16 36 H 0.12 3.85 8.14 -2.39 -0.02 3.83 16 37 H 0.11 3.82 8.14 -2.40 -0.02 3.80 16 38 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 Total: -1.00 -83.12 357.99 1.65 -81.47 By element: Atomic # 1 Polarization: 9.59 SS G_CDS: 0.29 Total: 9.88 kcal Atomic # 6 Polarization: -17.49 SS G_CDS: 5.32 Total: -12.17 kcal Atomic # 7 Polarization: -86.62 SS G_CDS: -3.47 Total: -90.09 kcal Atomic # 8 Polarization: -26.29 SS G_CDS: -0.05 Total: -26.34 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.27 kcal Atomic # 16 Polarization: -5.56 SS G_CDS: -2.46 Total: -8.02 kcal Total: -83.12 1.65 -81.47 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345615737.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.045 kcal (2) G-P(sol) polarization free energy of solvation -83.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds