Wall clock time and date at job start Tue Mar 31 2020 10:38:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 C 1.53000 * 109.47313 * 2 1 4 4 C 1.53006 * 109.47327 * 239.99844 * 2 1 3 5 5 C 1.50701 * 109.46976 * 59.99893 * 4 2 1 6 6 H 1.07997 * 119.99939 * 0.02562 * 5 4 2 7 7 C 1.37879 * 119.99881 * 179.97438 * 5 4 2 8 8 N 1.31516 * 119.99715 * 179.97438 * 7 5 4 9 9 Si 1.86799 * 120.00109 * 0.02562 * 7 5 4 10 10 H 1.48502 * 109.46885 * 89.99531 * 9 7 5 11 11 H 1.48499 * 109.46919 * 209.99632 * 9 7 5 12 12 H 1.48495 * 109.47098 * 329.99668 * 9 7 5 13 13 C 1.53004 * 109.47271 * 120.00096 * 2 1 3 14 14 N 1.46501 * 109.46995 * 299.99894 * 13 2 1 15 15 C 1.34776 * 120.00247 * 179.97438 * 14 13 2 16 16 O 1.21277 * 119.99491 * 359.97438 * 15 14 13 17 17 C 1.50701 * 120.00137 * 179.97438 * 15 14 13 18 18 C 1.50699 * 109.47126 * 179.97438 * 17 15 14 19 19 C 1.33347 * 125.18409 * 89.99876 * 18 17 15 20 20 C 1.38475 * 114.92849 * 180.02562 * 19 18 17 21 21 C 1.33503 * 114.88382 * 0.02562 * 20 19 18 22 22 Cl 1.73595 * 125.20870 * 179.97438 * 21 20 19 23 23 S 1.75877 * 125.19207 * 270.00150 * 18 17 15 24 24 H 1.09002 * 109.47276 * 300.00009 * 1 2 3 25 25 H 1.08999 * 109.47436 * 60.00042 * 1 2 3 26 26 H 1.09004 * 109.47547 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.47556 * 180.02562 * 3 2 1 28 28 H 1.08998 * 109.47013 * 299.99567 * 3 2 1 29 29 H 1.08993 * 109.47266 * 60.00314 * 3 2 1 30 30 H 1.08998 * 109.47349 * 180.02562 * 4 2 1 31 31 H 1.08997 * 109.46802 * 300.00023 * 4 2 1 32 32 H 0.96996 * 119.99891 * 180.02562 * 8 7 5 33 33 H 1.08996 * 109.47040 * 179.97438 * 13 2 1 34 34 H 1.08997 * 109.47395 * 59.99648 * 13 2 1 35 35 H 0.97008 * 119.99715 * 359.97438 * 14 13 2 36 36 H 1.09006 * 109.46898 * 59.99865 * 17 15 14 37 37 H 1.08997 * 109.46915 * 300.00108 * 17 15 14 38 38 H 1.07996 * 122.54060 * 0.02599 * 19 18 17 39 39 H 1.08005 * 122.55896 * 179.73668 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.5376 -0.0109 -2.4797 6 1 0.9170 0.8674 -2.3806 7 6 1.8712 -0.4817 -3.7320 8 7 1.4323 0.1380 -4.8058 9 14 2.9452 -2.0004 -3.9034 10 1 2.0865 -3.2112 -3.9493 11 1 3.7375 -1.9076 -5.1559 12 1 3.8651 -2.0898 -2.7411 13 6 2.0399 -0.7213 1.2492 14 7 1.5516 -0.0307 2.4454 15 6 1.8768 -0.4914 3.6695 16 8 2.5733 -1.4780 3.7808 17 6 1.3749 0.2194 4.9000 18 6 1.8761 -0.4918 6.1305 19 6 3.0223 -0.2262 6.7582 20 6 3.2742 -1.0117 7.8703 21 6 2.3313 -1.9161 8.1447 22 17 2.3738 -3.0358 9.4706 23 16 1.0388 -1.7986 6.9576 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 3.1300 1.4425 -0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9563 0.8899 30 1 3.1299 -0.7217 -1.2490 31 1 1.6766 -1.7489 -1.2492 32 1 1.6667 -0.1934 -5.6868 33 1 3.1299 -0.7217 1.2490 34 1 1.6766 -1.7489 1.2493 35 1 0.9942 0.7583 2.3564 36 1 0.2849 0.2203 4.8999 37 1 1.7391 1.2468 4.9000 38 1 3.7026 0.5433 6.4244 39 1 4.1678 -0.9043 8.4675 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345891942.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:38:51 Heat of formation + Delta-G solvation = -46.707331 kcal Electronic energy + Delta-G solvation = -21047.785901 eV Core-core repulsion = 17720.639204 eV Total energy + Delta-G solvation = -3327.146697 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 315.080 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.93543 -39.10953 -38.50703 -37.55938 -35.17602 -34.02831 -32.99654 -29.78299 -28.52342 -27.95625 -27.00232 -24.72347 -23.95013 -21.55095 -20.46475 -19.82509 -18.90115 -18.50623 -17.97903 -16.95443 -16.65761 -16.35664 -16.07352 -15.37230 -15.33709 -14.92690 -14.60012 -14.40190 -14.21890 -14.10212 -14.06881 -13.88808 -13.65184 -12.94333 -12.83131 -12.74627 -12.55370 -12.47096 -12.28710 -12.14846 -12.04241 -11.77312 -11.69761 -11.49528 -11.27746 -10.93443 -10.84534 -10.70455 -10.00998 -9.55648 -9.49129 -8.22417 -6.22156 -0.21914 0.12393 0.83088 1.22940 1.35279 1.38376 1.47940 1.61307 1.69365 2.36496 2.38756 3.13108 3.57939 3.91557 4.04098 4.08045 4.18901 4.20856 4.34946 4.55388 4.64998 4.66304 4.74050 4.82434 4.96532 4.98279 5.04508 5.11112 5.12296 5.31977 5.37504 5.39785 5.42662 5.51318 5.58716 5.72273 5.78205 6.38320 6.63336 6.85014 7.31816 7.40629 8.93061 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.030829 B = 0.002336 C = 0.002266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.031124 B =11981.009914 C =12353.664366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.057 4.057 3 C -0.124 4.124 4 C -0.005 4.005 5 C -0.500 4.500 6 H 0.054 0.946 7 C 0.005 3.995 8 N -0.950 5.950 9 Si 0.933 3.067 10 H -0.273 1.273 11 H -0.289 1.289 12 H -0.252 1.252 13 C 0.140 3.860 14 N -0.710 5.710 15 C 0.507 3.493 16 O -0.580 6.580 17 C -0.066 4.066 18 C -0.156 4.156 19 C -0.128 4.128 20 C -0.116 4.116 21 C -0.168 4.168 22 Cl -0.018 7.018 23 S 0.141 5.859 24 H 0.073 0.927 25 H 0.044 0.956 26 H 0.042 0.958 27 H 0.043 0.957 28 H 0.043 0.957 29 H 0.074 0.926 30 H 0.013 0.987 31 H 0.011 0.989 32 H 0.262 0.738 33 H 0.053 0.947 34 H 0.051 0.949 35 H 0.415 0.585 36 H 0.133 0.867 37 H 0.152 0.848 38 H 0.166 0.834 39 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.495 1.538 28.729 28.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.058 4.058 3 C -0.182 4.182 4 C -0.043 4.043 5 C -0.538 4.538 6 H 0.072 0.928 7 C -0.191 4.191 8 N -0.592 5.592 9 Si 0.758 3.242 10 H -0.198 1.198 11 H -0.215 1.215 12 H -0.176 1.176 13 C 0.015 3.985 14 N -0.363 5.363 15 C 0.294 3.706 16 O -0.460 6.460 17 C -0.108 4.108 18 C -0.274 4.274 19 C -0.158 4.158 20 C -0.149 4.149 21 C -0.312 4.312 22 Cl 0.011 6.989 23 S 0.405 5.595 24 H 0.092 0.908 25 H 0.063 0.937 26 H 0.061 0.939 27 H 0.062 0.938 28 H 0.063 0.937 29 H 0.093 0.907 30 H 0.032 0.968 31 H 0.029 0.971 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.069 0.931 35 H 0.254 0.746 36 H 0.151 0.849 37 H 0.170 0.830 38 H 0.183 0.817 39 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -1.366 -0.049 28.533 28.565 hybrid contribution 1.616 -0.012 -0.638 1.737 sum 0.250 -0.061 27.895 27.896 Atomic orbital electron populations 1.21717 0.93864 1.01187 1.01449 1.20545 0.96494 0.96183 0.92568 1.21711 1.00206 0.94773 1.01466 1.19586 0.95891 0.95455 0.93392 1.21372 1.30131 1.12263 0.90023 0.92813 1.25830 0.97486 0.99842 0.95990 1.70037 1.48132 1.42650 0.98413 0.85917 0.79904 0.80490 0.77880 1.19828 1.21508 1.17630 1.21223 0.98152 0.95459 0.83616 1.45953 1.53367 1.32285 1.04687 1.21060 0.79907 0.84360 0.85273 1.90729 1.39695 1.28235 1.87339 1.20322 1.04292 1.00791 0.85353 1.24156 1.00164 1.01341 1.01752 1.20203 0.97138 1.02733 0.95723 1.20432 1.00300 0.95166 0.98980 1.25351 1.03369 1.02816 0.99628 1.98358 1.98030 1.59366 1.43172 1.84382 1.21056 1.34251 1.19860 0.90805 0.93705 0.93881 0.93790 0.93739 0.90730 0.96848 0.97090 0.92894 0.92905 0.93055 0.74638 0.84942 0.83036 0.81680 0.81808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.89 8.05 71.98 0.58 -3.31 16 2 C -0.06 -1.92 0.54 -52.18 -0.03 -1.95 16 3 C -0.12 -3.84 8.05 71.98 0.58 -3.26 16 4 C -0.01 -0.24 3.11 29.85 0.09 -0.14 16 5 C -0.50 -26.68 8.20 25.60 0.21 -26.47 16 6 H 0.05 3.08 5.92 -2.91 -0.02 3.06 16 7 C 0.00 0.27 5.47 84.65 0.46 0.73 16 8 N -0.95 -58.15 13.96 21.45 0.30 -57.85 16 9 Si 0.93 44.20 27.47 68.60 1.88 46.08 16 10 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 11 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 12 H -0.25 -11.31 6.54 99.48 0.65 -10.66 16 13 C 0.14 4.15 4.56 86.38 0.39 4.55 16 14 N -0.71 -15.21 4.96 -463.06 -2.30 -17.51 16 15 C 0.51 11.39 7.82 87.66 0.69 12.08 16 16 O -0.58 -18.87 16.03 -3.02 -0.05 -18.92 16 17 C -0.07 -0.86 6.19 29.10 0.18 -0.68 16 18 C -0.16 -2.71 5.00 24.58 0.12 -2.59 16 19 C -0.13 -2.11 10.05 21.22 0.21 -1.90 16 20 C -0.12 -1.98 10.13 21.25 0.22 -1.77 16 21 C -0.17 -3.22 7.10 66.75 0.47 -2.74 16 22 Cl -0.02 -0.31 29.29 -2.72 -0.08 -0.39 16 23 S 0.14 2.69 23.33 -56.49 -1.32 1.38 16 24 H 0.07 1.65 6.86 -2.39 -0.02 1.64 16 25 H 0.04 1.66 6.62 -2.39 -0.02 1.64 16 26 H 0.04 1.37 8.14 -2.38 -0.02 1.35 16 27 H 0.04 1.38 8.14 -2.38 -0.02 1.36 16 28 H 0.04 1.63 6.62 -2.39 -0.02 1.62 16 29 H 0.07 1.64 6.86 -2.39 -0.02 1.63 16 30 H 0.01 0.60 7.20 -2.39 -0.02 0.58 16 31 H 0.01 0.48 7.57 -2.39 -0.02 0.47 16 32 H 0.26 15.19 8.31 -92.71 -0.77 14.41 16 33 H 0.05 1.70 8.14 -2.39 -0.02 1.69 16 34 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.42 6.31 6.16 -92.70 -0.57 5.74 16 36 H 0.13 1.07 8.14 -2.38 -0.02 1.05 16 37 H 0.15 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.17 2.01 8.06 -2.91 -0.02 1.99 16 39 H 0.16 2.12 8.06 -2.91 -0.02 2.09 16 Total: -1.00 -70.34 347.15 3.07 -67.27 By element: Atomic # 1 Polarization: 6.94 SS G_CDS: 0.44 Total: 7.38 kcal Atomic # 6 Polarization: -31.63 SS G_CDS: 4.18 Total: -27.44 kcal Atomic # 7 Polarization: -73.36 SS G_CDS: -2.00 Total: -75.36 kcal Atomic # 8 Polarization: -18.87 SS G_CDS: -0.05 Total: -18.92 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 1.88 Total: 46.08 kcal Atomic # 16 Polarization: 2.69 SS G_CDS: -1.32 Total: 1.38 kcal Atomic # 17 Polarization: -0.31 SS G_CDS: -0.08 Total: -0.39 kcal Total: -70.34 3.07 -67.27 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345891942.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.567 kcal (2) G-P(sol) polarization free energy of solvation -70.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds