Wall clock time and date at job start Tue Mar 31 2020 10:32:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.33770 * 122.45056 * 2 1 4 4 S 1.70613 * 110.99545 * 180.02562 * 3 2 1 5 5 C 1.75829 * 91.58644 * 0.02562 * 4 3 2 6 6 C 1.46440 * 125.45848 * 180.02562 * 5 4 3 7 7 O 1.21724 * 119.99715 * 179.97438 * 6 5 4 8 8 N 1.34781 * 120.00122 * 359.97438 * 6 5 4 9 9 C 1.46496 * 119.99781 * 179.97438 * 8 6 5 10 10 C 1.52998 * 109.46865 * 180.02562 * 9 8 6 11 11 C 1.53000 * 109.47386 * 300.00078 * 10 9 8 12 12 C 1.53000 * 109.46891 * 60.00680 * 10 9 8 13 13 C 1.53001 * 109.47127 * 180.02562 * 10 9 8 14 14 C 1.50696 * 109.47266 * 180.02562 * 13 10 9 15 15 H 1.08003 * 120.00406 * 359.97438 * 14 13 10 16 16 C 1.37885 * 120.00173 * 179.97438 * 14 13 10 17 17 N 1.31510 * 119.99578 * 359.97438 * 16 14 13 18 18 Si 1.86795 * 119.99987 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47204 * 0.02562 * 18 16 14 20 20 H 1.48506 * 109.47057 * 120.00066 * 18 16 14 21 21 H 1.48494 * 109.47179 * 239.99664 * 18 16 14 22 22 C 1.36793 * 109.07686 * 0.02562 * 5 4 3 23 23 Cl 1.73602 * 123.37689 * 180.02562 * 22 5 4 24 24 H 1.09000 * 109.47446 * 269.97628 * 1 2 3 25 25 H 1.09001 * 109.47046 * 29.97513 * 1 2 3 26 26 H 1.09001 * 109.47525 * 149.97332 * 1 2 3 27 27 H 1.07993 * 124.50436 * 0.04524 * 3 2 1 28 28 H 0.96996 * 120.00017 * 0.02562 * 8 6 5 29 29 H 1.08997 * 109.47548 * 300.00479 * 9 8 6 30 30 H 1.09006 * 109.46777 * 60.00807 * 9 8 6 31 31 H 1.09000 * 109.46848 * 60.00185 * 11 10 9 32 32 H 1.09003 * 109.47343 * 179.97438 * 11 10 9 33 33 H 1.08998 * 109.47304 * 300.00209 * 11 10 9 34 34 H 1.08997 * 109.47337 * 59.99816 * 12 10 9 35 35 H 1.09011 * 109.47070 * 179.97438 * 12 10 9 36 36 H 1.09000 * 109.47034 * 299.99625 * 12 10 9 37 37 H 1.09011 * 109.47069 * 300.00240 * 13 10 9 38 38 H 1.08998 * 109.47211 * 60.00007 * 13 10 9 39 39 H 0.97009 * 119.99826 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2248 1.1288 0.0000 4 16 3.8969 0.7900 -0.0007 5 6 3.5956 -0.9423 -0.0018 6 6 4.6251 -1.9837 -0.0023 7 8 4.3033 -3.1576 -0.0026 8 7 5.9290 -1.6423 -0.0024 9 6 6.9589 -2.6841 -0.0023 10 6 8.3432 -2.0327 -0.0018 11 6 8.4980 -1.1627 -1.2508 12 6 8.4973 -1.1633 1.2477 13 6 9.4189 -3.1207 -0.0024 14 6 10.7824 -2.4791 -0.0013 15 1 10.8729 -1.4029 -0.0007 16 6 11.9147 -3.2660 -0.0010 17 7 11.8046 -4.5765 -0.0012 18 14 13.6048 -2.4707 -0.0003 19 1 13.4566 -0.9931 0.0004 20 1 14.3504 -2.8935 1.2124 21 1 14.3512 -2.8932 -1.2125 22 6 2.2453 -1.1612 -0.0021 23 17 1.5345 -2.7450 -0.0025 24 1 -0.3634 -0.0004 1.0276 25 1 -0.3633 0.8902 -0.5135 26 1 -0.3634 -0.8897 -0.5142 27 1 1.8020 2.1226 0.0007 28 1 6.1854 -0.7068 -0.0018 29 1 6.8489 -3.3037 0.8877 30 1 6.8489 -3.3038 -0.8923 31 1 7.7317 -0.3875 -1.2508 32 1 9.4841 -0.6982 -1.2503 33 1 8.3882 -1.7821 -2.1410 34 1 8.3871 -1.7831 2.1375 35 1 9.4838 -0.6995 1.2483 36 1 7.7310 -0.3881 1.2477 37 1 9.3088 -3.7410 0.8873 38 1 9.3090 -3.7399 -0.8927 39 1 12.6012 -5.1302 -0.0006 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345943319.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:32:16 Heat of formation + Delta-G solvation = -31.393619 kcal Electronic energy + Delta-G solvation = -21469.292067 eV Core-core repulsion = 18142.809423 eV Total energy + Delta-G solvation = -3326.482644 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 315.080 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.83992 -38.58109 -37.01906 -36.29399 -33.66843 -32.18052 -31.26126 -28.22982 -27.18629 -26.53948 -26.51497 -24.33248 -22.66938 -20.63406 -19.48698 -18.96289 -17.87365 -16.59306 -16.22450 -15.81169 -15.38448 -14.70571 -14.49453 -14.48745 -14.02082 -13.69417 -13.58935 -13.18222 -12.91716 -12.77794 -12.67170 -12.40277 -12.12360 -12.07833 -11.59895 -11.40820 -11.18168 -11.04233 -10.95454 -10.84723 -10.66538 -10.43368 -10.26028 -9.90563 -9.89771 -9.21282 -9.13740 -8.93487 -8.74862 -8.68215 -8.37196 -6.01002 -4.02271 0.12867 0.92255 1.41568 1.89206 2.29505 3.17900 3.25529 3.29480 3.37805 3.40014 4.43963 4.48355 4.60081 4.85235 5.01234 5.25066 5.27906 5.34648 5.40909 5.49279 5.59545 5.71600 5.79473 5.85592 6.13690 6.19031 6.25553 6.36109 6.48443 6.60550 6.70538 7.02975 7.05059 7.09640 7.59422 7.63595 7.74775 7.97646 8.26863 8.39630 9.02659 9.60956 11.10491 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.029613 B = 0.002876 C = 0.002672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.300280 B = 9734.146251 C =10477.773121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.110 4.110 3 C -0.233 4.233 4 S 0.240 5.760 5 C -0.254 4.254 6 C 0.578 3.422 7 O -0.513 6.513 8 N -0.715 5.715 9 C 0.129 3.871 10 C -0.073 4.073 11 C -0.128 4.128 12 C -0.128 4.128 13 C 0.036 3.964 14 C -0.511 4.511 15 H 0.060 0.940 16 C 0.056 3.944 17 N -0.894 5.894 18 Si 0.889 3.111 19 H -0.273 1.273 20 H -0.285 1.285 21 H -0.285 1.285 22 C 0.015 3.985 23 Cl -0.013 7.013 24 H 0.074 0.926 25 H 0.071 0.929 26 H 0.073 0.927 27 H 0.176 0.824 28 H 0.395 0.605 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.027 0.973 32 H 0.068 0.932 33 H 0.049 0.951 34 H 0.049 0.951 35 H 0.068 0.932 36 H 0.027 0.973 37 H 0.019 0.981 38 H 0.019 0.981 39 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.374 13.539 0.014 25.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.123 4.123 3 C -0.371 4.371 4 S 0.508 5.492 5 C -0.376 4.376 6 C 0.362 3.638 7 O -0.390 6.390 8 N -0.367 5.367 9 C 0.007 3.993 10 C -0.074 4.074 11 C -0.185 4.185 12 C -0.185 4.185 13 C -0.001 4.001 14 C -0.549 4.549 15 H 0.078 0.922 16 C -0.145 4.145 17 N -0.533 5.533 18 Si 0.717 3.283 19 H -0.198 1.198 20 H -0.211 1.211 21 H -0.211 1.211 22 C -0.028 4.028 23 Cl 0.016 6.984 24 H 0.093 0.907 25 H 0.090 0.910 26 H 0.092 0.908 27 H 0.194 0.806 28 H 0.230 0.770 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.046 0.954 32 H 0.087 0.913 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.087 0.913 36 H 0.046 0.954 37 H 0.037 0.963 38 H 0.037 0.963 39 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -20.204 13.290 0.012 24.183 hybrid contribution -0.257 -0.110 0.008 0.279 sum -20.461 13.181 0.020 24.339 Atomic orbital electron populations 1.20565 0.88618 1.03383 1.02928 1.18463 0.98410 0.90134 1.05290 1.25009 0.98858 1.03168 1.10091 1.83176 1.03169 0.96054 1.66778 1.24680 0.96901 0.98652 1.17383 1.16787 0.81856 0.87271 0.77877 1.90890 1.81417 1.17533 1.49192 1.46082 1.05182 1.10971 1.74476 1.21706 0.86109 0.89274 1.02214 1.20926 0.93244 0.98040 0.95153 1.21775 1.01136 0.98280 0.97334 1.21776 1.01138 0.98287 0.97329 1.19094 0.91358 0.92105 0.97577 1.21212 0.90553 0.92911 1.50221 0.92183 1.25017 0.99151 0.94798 0.95554 1.69975 1.28978 1.03494 1.50884 0.86593 0.84697 0.79498 0.77537 1.19795 1.21139 1.21134 1.20194 0.90875 0.88816 1.02912 1.98397 1.82603 1.21278 1.96122 0.90708 0.91031 0.90839 0.80647 0.76994 0.91400 0.91391 0.95390 0.91273 0.93223 0.93229 0.91268 0.95382 0.96264 0.96262 0.93079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.66 9.86 36.01 0.35 -0.31 16 2 C -0.11 -1.04 5.78 -106.42 -0.62 -1.65 16 3 C -0.23 -1.82 10.67 29.16 0.31 -1.51 16 4 S 0.24 2.15 22.15 -107.50 -2.38 -0.23 16 5 C -0.25 -3.30 6.45 -36.80 -0.24 -3.54 16 6 C 0.58 9.22 7.78 -12.96 -0.10 9.12 16 7 O -0.51 -9.84 15.09 5.17 0.08 -9.76 16 8 N -0.72 -10.77 4.95 -61.69 -0.31 -11.08 16 9 C 0.13 2.29 4.56 -4.04 -0.02 2.27 16 10 C -0.07 -1.37 0.54 -154.51 -0.08 -1.46 16 11 C -0.13 -2.21 8.05 37.16 0.30 -1.91 16 12 C -0.13 -2.21 8.05 37.16 0.30 -1.91 16 13 C 0.04 0.88 4.04 -27.88 -0.11 0.76 16 14 C -0.51 -13.40 7.65 -34.44 -0.26 -13.67 16 15 H 0.06 1.51 5.68 -52.48 -0.30 1.22 16 16 C 0.06 1.54 5.46 -17.82 -0.10 1.45 16 17 N -0.89 -26.27 13.29 55.43 0.74 -25.54 16 18 Si 0.89 21.05 29.54 -169.99 -5.02 16.03 16 19 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 20 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 21 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 22 C 0.01 0.18 6.38 -40.34 -0.26 -0.08 16 23 Cl -0.01 -0.17 26.18 -51.86 -1.36 -1.53 16 24 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 25 H 0.07 0.36 8.12 -51.93 -0.42 -0.06 16 26 H 0.07 0.53 7.40 -51.93 -0.38 0.15 16 27 H 0.18 0.84 8.06 -52.49 -0.42 0.42 16 28 H 0.39 5.10 5.27 -40.82 -0.22 4.88 16 29 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 30 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 31 H 0.03 0.39 6.86 -51.93 -0.36 0.04 16 32 H 0.07 1.28 6.62 -51.93 -0.34 0.94 16 33 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 34 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 35 H 0.07 1.28 6.62 -51.92 -0.34 0.94 16 36 H 0.03 0.39 6.86 -51.93 -0.36 0.04 16 37 H 0.02 0.50 8.14 -51.92 -0.42 0.08 16 38 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 344.57 15.07 5.19 5.19 Total: -1.00 -30.89 344.57 -8.82 -39.71 By element: Atomic # 1 Polarization: 4.89 SS G_CDS: -5.24 Total: -0.35 kcal Atomic # 6 Polarization: -11.92 SS G_CDS: -0.52 Total: -12.45 kcal Atomic # 7 Polarization: -37.04 SS G_CDS: 0.43 Total: -36.61 kcal Atomic # 8 Polarization: -9.84 SS G_CDS: 0.08 Total: -9.76 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Atomic # 16 Polarization: 2.15 SS G_CDS: -2.38 Total: -0.23 kcal Atomic # 17 Polarization: -0.17 SS G_CDS: -1.36 Total: -1.53 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -30.89 -8.82 -39.71 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345943319.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.316 kcal (2) G-P(sol) polarization free energy of solvation -30.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds