Wall clock time and date at job start Tue Mar 31 2020 11:10:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.35977 * 116.99838 * 2 1 4 4 C 1.38713 * 120.00271 * 0.02562 * 3 2 1 5 5 C 1.38109 * 120.00049 * 179.97438 * 4 3 2 6 6 C 1.38719 * 120.00061 * 0.02562 * 5 4 3 7 7 O 1.35981 * 120.00142 * 179.97438 * 6 5 4 8 8 C 1.42907 * 116.99796 * 0.02562 * 7 6 5 9 9 C 1.38671 * 119.99781 * 0.02562 * 6 5 4 10 10 S 1.76208 * 120.00039 * 179.97438 * 9 6 5 11 11 O 1.42092 * 106.40335 * 181.45424 * 10 9 6 12 12 O 1.42104 * 106.40038 * 48.53488 * 10 9 6 13 13 N 1.65595 * 107.21773 * 294.99862 * 10 9 6 14 14 C 1.46506 * 120.00153 * 64.99449 * 13 10 9 15 15 H 1.08996 * 109.46660 * 25.00812 * 14 13 10 16 16 C 1.52997 * 109.47289 * 265.00098 * 14 13 10 17 17 C 1.50708 * 109.46796 * 145.00172 * 14 13 10 18 18 H 1.07995 * 119.99755 * 0.02562 * 17 14 13 19 19 C 1.37873 * 119.99729 * 180.02562 * 17 14 13 20 20 N 1.31516 * 119.99909 * 0.02562 * 19 17 14 21 21 Si 1.86803 * 119.99980 * 179.97438 * 19 17 14 22 22 H 1.48501 * 109.46950 * 0.02562 * 21 19 17 23 23 H 1.48497 * 109.47111 * 120.00368 * 21 19 17 24 24 H 1.48500 * 109.47074 * 240.00161 * 21 19 17 25 25 C 1.38151 * 120.00445 * 0.22867 * 9 6 5 26 26 H 1.09004 * 109.46768 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.46645 * 299.99704 * 1 2 3 28 28 H 1.08998 * 109.47035 * 60.00105 * 1 2 3 29 29 H 1.07997 * 119.99984 * 359.97438 * 4 3 2 30 30 H 1.08002 * 120.00215 * 179.97438 * 5 4 3 31 31 H 1.08995 * 109.47300 * 299.99594 * 8 7 6 32 32 H 1.08996 * 109.46772 * 59.99892 * 8 7 6 33 33 H 1.09003 * 109.46502 * 179.97438 * 8 7 6 34 34 H 0.96995 * 120.00147 * 244.99746 * 13 10 9 35 35 H 1.09002 * 109.47153 * 179.97438 * 16 14 13 36 36 H 1.09001 * 109.46832 * 60.00146 * 16 14 13 37 37 H 1.09004 * 109.47261 * 300.00128 * 16 14 13 38 38 H 0.97002 * 119.99804 * 180.02562 * 20 19 17 39 39 H 1.08001 * 120.00475 * 179.72903 * 25 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 1.2909 2.3749 0.0005 5 6 1.9179 3.6055 0.0011 6 6 3.3032 3.6781 0.0005 7 8 3.9206 4.8897 0.0005 8 6 3.0806 6.0458 0.0017 9 6 4.0584 2.5151 -0.0011 10 16 5.8181 2.6072 -0.0024 11 8 6.2900 1.2674 -0.0386 12 8 6.1724 3.5288 1.0196 13 7 6.2715 3.3016 -1.4358 14 6 5.9027 4.6894 -1.7264 15 1 5.7511 5.2284 -0.7913 16 6 4.6099 4.7130 -2.5443 17 6 7.0067 5.3483 -2.5128 18 1 7.8940 4.7891 -2.7705 19 6 6.8840 6.6649 -2.9030 20 7 5.8037 7.3459 -2.5886 21 14 8.2527 7.4819 -3.8770 22 1 9.3513 6.5078 -4.0995 23 1 7.7234 7.9383 -5.1873 24 1 8.7711 8.6489 -3.1190 25 6 3.4313 1.2841 -0.0069 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3632 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 0.2124 2.3184 0.0005 30 1 1.3297 4.5113 0.0011 31 1 2.4507 6.0382 -0.8878 32 1 2.4521 6.0373 0.8921 33 1 3.6985 6.9438 0.0020 34 1 6.7811 2.7895 -2.0830 35 1 4.3353 5.7456 -2.7602 36 1 3.8115 4.2364 -1.9756 37 1 4.7616 4.1739 -3.4795 38 1 5.7172 8.2722 -2.8635 39 1 4.0195 0.3783 -0.0126 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000351532179.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:05 Heat of formation + Delta-G solvation = -132.806112 kcal Electronic energy + Delta-G solvation = -25805.175796 eV Core-core repulsion = 22033.586411 eV Total energy + Delta-G solvation = -3771.589384 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.102 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.60376 -40.11891 -38.20403 -37.37252 -37.05188 -36.82816 -34.03559 -32.58404 -30.81098 -30.02668 -28.28162 -27.80159 -27.15677 -24.25249 -23.18930 -22.70564 -20.55297 -19.82046 -19.08583 -18.63059 -17.95861 -17.68445 -17.16816 -16.95684 -16.85772 -16.52598 -16.23600 -15.82072 -15.41260 -15.24009 -14.60676 -14.26916 -13.93657 -13.79135 -13.70328 -13.51308 -13.40190 -13.14908 -13.02662 -12.94973 -12.78450 -12.62771 -12.48972 -12.33209 -12.23560 -12.07191 -11.93504 -11.57929 -11.39381 -10.91083 -10.56916 -10.47300 -9.98395 -8.88016 -8.06254 -6.16826 -0.49161 -0.25214 0.31061 1.45315 1.48732 1.58510 2.15865 2.23388 2.37696 2.45228 2.52267 2.83254 3.23294 3.49973 3.65974 3.78449 4.12572 4.16499 4.35966 4.43585 4.44376 4.49607 4.58429 4.68683 4.73896 4.78762 4.88845 5.01045 5.06612 5.09402 5.19199 5.28045 5.33012 5.68570 5.93959 6.14466 6.21951 6.26330 6.42423 6.51820 6.91576 7.49462 8.98568 Molecular weight = 315.10amu Principal moments of inertia in cm(-1) A = 0.019615 B = 0.004909 C = 0.004409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1427.105457 B = 5702.739794 C = 6349.625797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.333 6.333 3 C 0.062 3.938 4 C -0.100 4.100 5 C -0.188 4.188 6 C 0.184 3.816 7 O -0.315 6.315 8 C 0.025 3.975 9 C -0.686 4.686 10 S 2.709 3.291 11 O -0.996 6.996 12 O -0.988 6.988 13 N -1.102 6.102 14 C 0.273 3.727 15 H 0.052 0.948 16 C -0.140 4.140 17 C -0.545 4.545 18 H 0.056 0.944 19 C 0.025 3.975 20 N -0.901 5.901 21 Si 0.954 3.046 22 H -0.274 1.274 23 H -0.278 1.278 24 H -0.282 1.282 25 C -0.037 4.037 26 H 0.120 0.880 27 H 0.069 0.931 28 H 0.067 0.933 29 H 0.178 0.822 30 H 0.170 0.830 31 H 0.070 0.930 32 H 0.080 0.920 33 H 0.097 0.903 34 H 0.413 0.587 35 H 0.076 0.924 36 H 0.036 0.964 37 H 0.020 0.980 38 H 0.264 0.736 39 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.616 -7.739 3.757 17.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.247 6.247 3 C 0.017 3.983 4 C -0.119 4.119 5 C -0.208 4.208 6 C 0.136 3.864 7 O -0.228 6.228 8 C -0.068 4.068 9 C -0.775 4.775 10 S 2.800 3.200 11 O -0.986 6.986 12 O -0.979 6.979 13 N -0.863 5.863 14 C 0.168 3.832 15 H 0.069 0.931 16 C -0.199 4.199 17 C -0.585 4.585 18 H 0.074 0.926 19 C -0.176 4.176 20 N -0.540 5.540 21 Si 0.781 3.219 22 H -0.199 1.199 23 H -0.204 1.204 24 H -0.208 1.208 25 C -0.057 4.057 26 H 0.138 0.862 27 H 0.088 0.912 28 H 0.086 0.914 29 H 0.195 0.805 30 H 0.188 0.812 31 H 0.089 0.911 32 H 0.099 0.901 33 H 0.115 0.885 34 H 0.248 0.752 35 H 0.094 0.906 36 H 0.055 0.945 37 H 0.039 0.961 38 H 0.073 0.927 39 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -14.961 -7.846 4.544 17.494 hybrid contribution 0.111 0.680 -1.120 1.315 sum -14.850 -7.165 3.425 16.840 Atomic orbital electron populations 1.23424 0.76161 1.05900 1.02530 1.86087 1.23649 1.25562 1.89433 1.18863 0.91647 0.85687 1.02144 1.21700 1.01987 0.90448 0.97737 1.21508 0.91999 1.00536 1.06710 1.18510 0.92306 0.84807 0.90766 1.86491 1.36791 1.12854 1.86638 1.23279 0.95837 0.85336 1.02373 1.29829 1.26364 0.97014 1.24338 1.00967 0.74039 0.71711 0.73258 1.93473 1.80503 1.37342 1.87313 1.93525 1.82414 1.64801 1.57118 1.55377 1.69408 1.23882 1.37585 1.18555 0.92859 0.75533 0.96224 0.93054 1.22210 0.97313 1.02332 0.98032 1.21674 1.03895 0.97362 1.35558 0.92588 1.25498 0.97909 0.97401 0.96795 1.69942 1.27531 1.09895 1.46612 0.85572 0.79671 0.78248 0.78434 1.19904 1.20373 1.20844 1.19999 0.93287 0.95733 0.96652 0.86225 0.91212 0.91405 0.80526 0.81240 0.91105 0.90113 0.88469 0.75249 0.90569 0.94486 0.96131 0.92675 0.83147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.17 9.81 113.37 1.11 1.28 16 2 O -0.33 -7.58 10.50 -93.29 -0.98 -8.56 16 3 C 0.06 1.65 6.68 22.49 0.15 1.80 16 4 C -0.10 -2.15 9.03 22.35 0.20 -1.95 16 5 C -0.19 -4.72 9.03 22.35 0.20 -4.52 16 6 C 0.18 6.29 4.31 22.49 0.10 6.39 16 7 O -0.32 -11.94 4.36 -83.89 -0.37 -12.31 16 8 C 0.03 0.74 9.52 113.37 1.08 1.82 16 9 C -0.69 -25.09 5.73 22.35 0.13 -24.96 16 10 S 2.71 114.48 5.45 -56.49 -0.31 114.18 16 11 O -1.00 -42.66 16.97 -128.00 -2.17 -44.83 16 12 O -0.99 -48.31 16.63 -122.87 -2.04 -50.35 16 13 N -1.10 -48.31 5.46 -172.51 -0.94 -49.26 16 14 C 0.27 13.44 2.12 44.25 0.09 13.54 16 15 H 0.05 2.78 5.39 -2.39 -0.01 2.77 16 16 C -0.14 -6.30 8.10 71.98 0.58 -5.72 16 17 C -0.55 -29.32 8.76 25.60 0.22 -29.10 16 18 H 0.06 2.99 7.81 -2.91 -0.02 2.97 16 19 C 0.02 1.30 5.30 84.65 0.45 1.75 16 20 N -0.90 -47.38 11.32 21.45 0.24 -47.13 16 21 Si 0.95 42.32 29.54 68.60 2.03 44.35 16 22 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 23 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 24 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 25 C -0.04 -1.19 9.48 22.36 0.21 -0.97 16 26 H 0.12 0.93 8.14 -2.38 -0.02 0.91 16 27 H 0.07 0.62 7.66 -2.39 -0.02 0.60 16 28 H 0.07 0.64 7.66 -2.39 -0.02 0.62 16 29 H 0.18 2.18 6.29 -2.91 -0.02 2.16 16 30 H 0.17 3.10 6.29 -2.91 -0.02 3.08 16 31 H 0.07 1.82 7.66 -2.39 -0.02 1.80 16 32 H 0.08 1.74 7.66 -2.39 -0.02 1.72 16 33 H 0.10 3.13 8.14 -2.39 -0.02 3.11 16 34 H 0.41 16.58 8.83 -96.75 -0.85 15.73 16 35 H 0.08 3.67 6.07 -2.39 -0.01 3.65 16 36 H 0.04 1.47 4.28 -2.39 -0.01 1.46 16 37 H 0.02 0.89 8.14 -2.38 -0.02 0.87 16 38 H 0.26 13.11 8.31 -92.71 -0.77 12.34 16 39 H 0.15 4.74 7.33 -2.91 -0.02 4.72 16 Total: -1.00 -70.62 325.11 0.24 -70.39 By element: Atomic # 1 Polarization: 23.92 SS G_CDS: 0.25 Total: 24.17 kcal Atomic # 6 Polarization: -45.17 SS G_CDS: 4.53 Total: -40.64 kcal Atomic # 7 Polarization: -95.69 SS G_CDS: -0.70 Total: -96.39 kcal Atomic # 8 Polarization: -110.49 SS G_CDS: -5.56 Total: -116.05 kcal Atomic # 14 Polarization: 42.32 SS G_CDS: 2.03 Total: 44.35 kcal Atomic # 16 Polarization: 114.48 SS G_CDS: -0.31 Total: 114.18 kcal Total: -70.62 0.24 -70.39 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351532179.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.420 kcal (2) G-P(sol) polarization free energy of solvation -70.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds