Wall clock time and date at job start Tue Mar 31 2020 11:10:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35981 * 116.99657 * 2 1 4 4 C 1.38719 * 120.00381 * 359.97438 * 3 2 1 5 5 C 1.38113 * 119.99980 * 180.02562 * 4 3 2 6 6 C 1.38719 * 120.00184 * 0.02562 * 5 4 3 7 7 O 1.35974 * 119.99899 * 179.97438 * 6 5 4 8 8 C 1.42895 * 117.00459 * 0.02577 * 7 6 5 9 9 C 1.38683 * 119.99751 * 0.02562 * 6 5 4 10 10 S 1.76201 * 119.99654 * 179.70255 * 9 6 5 11 11 O 1.42104 * 106.39963 * 178.34025 * 10 9 6 12 12 O 1.42096 * 106.40435 * 311.26406 * 10 9 6 13 13 N 1.65605 * 107.21661 * 64.80579 * 10 9 6 14 14 C 1.46491 * 120.00179 * 64.17346 * 13 10 9 15 15 H 1.09000 * 109.47193 * 336.05400 * 14 13 10 16 16 C 1.52994 * 109.47466 * 96.05827 * 14 13 10 17 17 C 1.50709 * 109.47093 * 216.05999 * 14 13 10 18 18 H 1.08005 * 119.99576 * 359.97438 * 17 14 13 19 19 C 1.37869 * 120.00210 * 179.97438 * 17 14 13 20 20 N 1.31517 * 119.99862 * 359.97438 * 19 17 14 21 21 Si 1.86798 * 119.99951 * 179.97438 * 19 17 14 22 22 H 1.48498 * 109.47481 * 59.99891 * 21 19 17 23 23 H 1.48500 * 109.47108 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.47109 * 299.99474 * 21 19 17 25 25 C 1.38148 * 120.00002 * 359.97438 * 9 6 5 26 26 H 1.08998 * 109.47569 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47362 * 300.00501 * 1 2 3 28 28 H 1.09003 * 109.47084 * 60.00668 * 1 2 3 29 29 H 1.08005 * 119.99776 * 359.97438 * 4 3 2 30 30 H 1.07997 * 119.99720 * 179.97438 * 5 4 3 31 31 H 1.09000 * 109.47773 * 180.02562 * 8 7 6 32 32 H 1.09009 * 109.46734 * 299.99527 * 8 7 6 33 33 H 1.08996 * 109.47425 * 59.99132 * 8 7 6 34 34 H 0.97001 * 119.99277 * 244.16836 * 13 10 9 35 35 H 1.09006 * 109.47156 * 179.97438 * 16 14 13 36 36 H 1.08997 * 109.47224 * 299.99833 * 16 14 13 37 37 H 1.08998 * 109.47226 * 60.00401 * 16 14 13 38 38 H 0.97007 * 119.99468 * 180.02562 * 20 19 17 39 39 H 1.08001 * 120.00107 * 179.97438 * 25 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 1.2908 2.3750 -0.0005 5 6 1.9178 3.6056 -0.0011 6 6 3.3031 3.6782 -0.0016 7 8 3.9204 4.8898 -0.0027 8 6 3.0805 6.0459 -0.0026 9 6 4.0584 2.5151 -0.0021 10 16 5.8180 2.6074 -0.0108 11 8 6.2902 1.2677 0.0300 12 8 6.1667 3.5235 -1.0395 13 7 6.2790 3.3093 1.4166 14 6 6.0092 2.6314 2.6869 15 1 5.1714 1.9454 2.5619 16 6 7.2497 1.8479 3.1204 17 6 5.6679 3.6545 3.7397 18 1 5.6539 4.7046 3.4876 19 6 5.3737 3.2499 5.0244 20 7 5.3903 1.9711 5.3311 21 14 4.9514 4.5180 6.3293 22 1 3.7480 5.2795 5.9086 23 1 4.6766 3.8308 7.6168 24 1 6.0934 5.4517 6.5001 25 6 3.4312 1.2842 -0.0016 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5137 -0.8901 29 1 0.2122 2.3185 -0.0014 30 1 1.3296 4.5113 -0.0019 31 1 3.6983 6.9439 -0.0040 32 1 2.4506 6.0374 -0.8922 33 1 2.4518 6.0382 0.8877 34 1 6.7277 4.1692 1.4114 35 1 7.0490 1.3438 4.0659 36 1 7.4965 1.1079 2.3591 37 1 8.0874 2.5339 3.2455 38 1 5.1829 1.6864 6.2350 39 1 4.0194 0.3784 -0.0024 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000351532180.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:09 Heat of formation + Delta-G solvation = -117.615996 kcal Electronic energy + Delta-G solvation = -25438.110872 eV Core-core repulsion = 21667.180180 eV Total energy + Delta-G solvation = -3770.930692 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.102 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.39754 -38.98066 -36.59894 -36.19645 -35.31686 -35.15477 -32.12609 -31.41456 -29.76247 -28.17317 -27.45678 -26.90843 -25.15625 -23.07628 -22.07038 -20.84619 -19.30054 -18.25001 -17.64111 -17.20219 -16.89156 -16.04478 -15.79982 -15.74003 -15.50759 -15.14360 -14.78110 -14.51006 -14.26469 -13.63871 -13.35846 -12.86644 -12.77488 -12.53467 -12.49688 -12.10164 -11.73554 -11.65774 -11.58805 -11.45773 -11.33605 -11.24737 -11.09795 -10.94847 -10.56231 -10.48390 -10.34340 -10.20892 -10.05027 -9.33483 -9.13262 -8.56143 -8.21427 -7.76327 -6.08791 -4.16334 0.86153 1.22300 1.48778 3.20076 3.25466 3.31076 3.32352 3.35759 3.51055 3.85778 4.36971 4.40375 4.63459 4.76166 4.92519 5.00170 5.05684 5.12642 5.21186 5.22468 5.35568 5.39008 5.46392 5.54254 5.74549 5.93691 6.07282 6.23962 6.41742 6.47093 6.91407 7.13792 7.17315 7.19785 7.43962 7.64808 7.77499 7.93720 8.10630 8.35283 8.86983 9.49103 10.96891 Molecular weight = 315.10amu Principal moments of inertia in cm(-1) A = 0.010858 B = 0.005939 C = 0.005432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2578.029064 B = 4713.337746 C = 5153.410320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.314 6.314 3 C 0.067 3.933 4 C -0.118 4.118 5 C -0.192 4.192 6 C 0.200 3.800 7 O -0.302 6.302 8 C 0.028 3.972 9 C -0.660 4.660 10 S 2.698 3.302 11 O -0.965 6.965 12 O -0.972 6.972 13 N -1.093 6.093 14 C 0.275 3.725 15 H 0.040 0.960 16 C -0.157 4.157 17 C -0.522 4.522 18 H 0.063 0.937 19 C 0.064 3.936 20 N -0.887 5.887 21 Si 0.898 3.102 22 H -0.279 1.279 23 H -0.287 1.287 24 H -0.276 1.276 25 C -0.011 4.011 26 H 0.099 0.901 27 H 0.054 0.946 28 H 0.052 0.948 29 H 0.134 0.866 30 H 0.137 0.863 31 H 0.105 0.895 32 H 0.055 0.945 33 H 0.059 0.941 34 H 0.410 0.590 35 H 0.091 0.909 36 H 0.025 0.975 37 H 0.032 0.968 38 H 0.264 0.736 39 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.373 2.506 -9.862 14.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.228 6.228 3 C 0.022 3.978 4 C -0.137 4.137 5 C -0.212 4.212 6 C 0.152 3.848 7 O -0.214 6.214 8 C -0.067 4.067 9 C -0.745 4.745 10 S 2.784 3.216 11 O -0.955 6.955 12 O -0.962 6.962 13 N -0.854 5.854 14 C 0.171 3.829 15 H 0.058 0.942 16 C -0.217 4.217 17 C -0.561 4.561 18 H 0.082 0.918 19 C -0.139 4.139 20 N -0.525 5.525 21 Si 0.726 3.274 22 H -0.204 1.204 23 H -0.212 1.212 24 H -0.201 1.201 25 C -0.031 4.031 26 H 0.118 0.882 27 H 0.073 0.927 28 H 0.070 0.930 29 H 0.152 0.848 30 H 0.154 0.846 31 H 0.123 0.877 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.244 0.756 35 H 0.109 0.891 36 H 0.044 0.956 37 H 0.051 0.949 38 H 0.074 0.926 39 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -9.705 1.769 -10.365 14.309 hybrid contribution -1.555 1.426 1.231 2.443 sum -11.260 3.195 -9.134 14.847 Atomic orbital electron populations 1.23031 0.78844 1.03904 1.01020 1.86109 1.20916 1.26234 1.89577 1.18831 0.92237 0.84379 1.02368 1.21210 0.99959 0.91818 1.00747 1.21040 0.93164 0.98578 1.08395 1.18150 0.90795 0.84511 0.91345 1.86169 1.35693 1.12088 1.87425 1.23122 0.95968 0.86329 1.01234 1.30316 1.28511 0.95410 1.20230 1.01720 0.73163 0.73663 0.73039 1.93556 1.77880 1.37182 1.86887 1.93531 1.82312 1.64346 1.55992 1.55451 1.73019 1.34680 1.22268 1.18498 0.93897 0.91593 0.78892 0.94195 1.22224 0.98022 0.98940 1.02490 1.21266 1.47487 0.93343 0.94029 0.91848 1.24912 0.95264 0.95388 0.98338 1.69881 1.48356 1.13974 1.20256 0.86574 0.78848 0.81327 0.80693 1.20439 1.21237 1.20126 1.20041 0.91908 0.96719 0.94439 0.88240 0.92728 0.92988 0.84821 0.84564 0.87695 0.92670 0.92192 0.75626 0.89068 0.95557 0.94911 0.92605 0.82547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 9.81 101.05 0.99 1.25 16 2 O -0.31 -4.55 10.50 -19.68 -0.21 -4.75 16 3 C 0.07 1.07 6.69 -39.24 -0.26 0.81 16 4 C -0.12 -1.63 9.03 -39.45 -0.36 -1.98 16 5 C -0.19 -2.77 9.03 -39.45 -0.36 -3.12 16 6 C 0.20 3.50 6.63 -39.24 -0.26 3.24 16 7 O -0.30 -5.07 9.29 -29.14 -0.27 -5.34 16 8 C 0.03 0.32 9.81 101.05 0.99 1.32 16 9 C -0.66 -12.65 5.70 -39.45 -0.22 -12.87 16 10 S 2.70 55.52 5.22 -107.50 -0.56 54.96 16 11 O -0.96 -21.59 16.36 -57.17 -0.94 -22.52 16 12 O -0.97 -20.81 17.31 -62.42 -1.08 -21.89 16 13 N -1.09 -23.29 5.45 -5.89 -0.03 -23.33 16 14 C 0.28 6.81 2.77 -69.09 -0.19 6.62 16 15 H 0.04 1.06 7.81 -51.93 -0.41 0.65 16 16 C -0.16 -3.87 9.29 37.15 0.35 -3.52 16 17 C -0.52 -13.64 8.76 -34.44 -0.30 -13.94 16 18 H 0.06 1.61 7.81 -52.48 -0.41 1.20 16 19 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 20 N -0.89 -24.48 11.32 55.43 0.63 -23.86 16 21 Si 0.90 20.53 29.54 -169.99 -5.02 15.50 16 22 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 23 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 24 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 25 C -0.01 -0.21 9.48 -39.45 -0.37 -0.58 16 26 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.05 0.47 7.66 -51.93 -0.40 0.07 16 28 H 0.05 0.40 7.66 -51.93 -0.40 0.00 16 29 H 0.13 1.34 6.29 -52.48 -0.33 1.01 16 30 H 0.14 1.48 6.29 -52.49 -0.33 1.15 16 31 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.05 0.51 7.66 -51.92 -0.40 0.11 16 33 H 0.06 0.63 7.66 -51.93 -0.40 0.23 16 34 H 0.41 7.99 8.84 -34.47 -0.30 7.68 16 35 H 0.09 2.41 6.07 -51.93 -0.32 2.09 16 36 H 0.03 0.61 7.75 -51.93 -0.40 0.21 16 37 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 38 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 39 H 0.16 2.76 7.33 -52.49 -0.38 2.38 16 LS Contribution 340.21 15.07 5.13 5.13 Total: -1.00 -33.21 340.21 -7.32 -40.53 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: -4.88 Total: 6.75 kcal Atomic # 6 Polarization: -21.10 SS G_CDS: -0.09 Total: -21.19 kcal Atomic # 7 Polarization: -47.78 SS G_CDS: 0.60 Total: -47.18 kcal Atomic # 8 Polarization: -52.01 SS G_CDS: -2.49 Total: -54.50 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.50 kcal Atomic # 16 Polarization: 55.52 SS G_CDS: -0.56 Total: 54.96 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -33.21 -7.32 -40.53 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351532180.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.084 kcal (2) G-P(sol) polarization free energy of solvation -33.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds