Wall clock time and date at job start Tue Mar 31 2020 11:10:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35981 * 116.99657 * 2 1 4 4 C 1.38719 * 120.00381 * 359.97438 * 3 2 1 5 5 C 1.38113 * 119.99980 * 180.02562 * 4 3 2 6 6 C 1.38719 * 120.00184 * 0.02562 * 5 4 3 7 7 O 1.35974 * 119.99899 * 179.97438 * 6 5 4 8 8 C 1.42895 * 117.00459 * 0.02577 * 7 6 5 9 9 C 1.38683 * 119.99751 * 0.02562 * 6 5 4 10 10 S 1.76201 * 119.99654 * 179.70255 * 9 6 5 11 11 O 1.42104 * 106.39963 * 178.34025 * 10 9 6 12 12 O 1.42096 * 106.40435 * 311.26406 * 10 9 6 13 13 N 1.65605 * 107.21661 * 64.80579 * 10 9 6 14 14 C 1.46491 * 120.00179 * 64.17346 * 13 10 9 15 15 H 1.09000 * 109.47193 * 336.05400 * 14 13 10 16 16 C 1.52994 * 109.47466 * 96.05827 * 14 13 10 17 17 C 1.50709 * 109.47093 * 216.05999 * 14 13 10 18 18 H 1.08005 * 119.99576 * 359.97438 * 17 14 13 19 19 C 1.37869 * 120.00210 * 179.97438 * 17 14 13 20 20 N 1.31517 * 119.99862 * 359.97438 * 19 17 14 21 21 Si 1.86798 * 119.99951 * 179.97438 * 19 17 14 22 22 H 1.48498 * 109.47481 * 59.99891 * 21 19 17 23 23 H 1.48500 * 109.47108 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.47109 * 299.99474 * 21 19 17 25 25 C 1.38148 * 120.00002 * 359.97438 * 9 6 5 26 26 H 1.08998 * 109.47569 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47362 * 300.00501 * 1 2 3 28 28 H 1.09003 * 109.47084 * 60.00668 * 1 2 3 29 29 H 1.08005 * 119.99776 * 359.97438 * 4 3 2 30 30 H 1.07997 * 119.99720 * 179.97438 * 5 4 3 31 31 H 1.09000 * 109.47773 * 180.02562 * 8 7 6 32 32 H 1.09009 * 109.46734 * 299.99527 * 8 7 6 33 33 H 1.08996 * 109.47425 * 59.99132 * 8 7 6 34 34 H 0.97001 * 119.99277 * 244.16836 * 13 10 9 35 35 H 1.09006 * 109.47156 * 179.97438 * 16 14 13 36 36 H 1.08997 * 109.47224 * 299.99833 * 16 14 13 37 37 H 1.08998 * 109.47226 * 60.00401 * 16 14 13 38 38 H 0.97007 * 119.99468 * 180.02562 * 20 19 17 39 39 H 1.08001 * 120.00107 * 179.97438 * 25 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 1.2908 2.3750 -0.0005 5 6 1.9178 3.6056 -0.0011 6 6 3.3031 3.6782 -0.0016 7 8 3.9204 4.8898 -0.0027 8 6 3.0805 6.0459 -0.0026 9 6 4.0584 2.5151 -0.0021 10 16 5.8180 2.6074 -0.0108 11 8 6.2902 1.2677 0.0300 12 8 6.1667 3.5235 -1.0395 13 7 6.2790 3.3093 1.4166 14 6 6.0092 2.6314 2.6869 15 1 5.1714 1.9454 2.5619 16 6 7.2497 1.8479 3.1204 17 6 5.6679 3.6545 3.7397 18 1 5.6539 4.7046 3.4876 19 6 5.3737 3.2499 5.0244 20 7 5.3903 1.9711 5.3311 21 14 4.9514 4.5180 6.3293 22 1 3.7480 5.2795 5.9086 23 1 4.6766 3.8308 7.6168 24 1 6.0934 5.4517 6.5001 25 6 3.4312 1.2842 -0.0016 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5137 -0.8901 29 1 0.2122 2.3185 -0.0014 30 1 1.3296 4.5113 -0.0019 31 1 3.6983 6.9439 -0.0040 32 1 2.4506 6.0374 -0.8922 33 1 2.4518 6.0382 0.8877 34 1 6.7277 4.1692 1.4114 35 1 7.0490 1.3438 4.0659 36 1 7.4965 1.1079 2.3591 37 1 8.0874 2.5339 3.2455 38 1 5.1829 1.6864 6.2350 39 1 4.0194 0.3784 -0.0024 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000351532180.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:08 Heat of formation + Delta-G solvation = -142.741720 kcal Electronic energy + Delta-G solvation = -25439.200405 eV Core-core repulsion = 21667.180180 eV Total energy + Delta-G solvation = -3772.020225 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.102 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.54155 -40.06999 -38.23878 -37.39569 -37.20738 -36.85800 -34.08828 -32.60762 -30.86392 -30.08923 -28.33716 -27.83608 -27.20700 -24.29941 -23.25645 -22.77376 -20.70192 -19.72961 -19.03236 -18.69123 -18.16544 -17.70599 -17.13903 -17.02887 -16.85255 -16.48598 -16.23563 -15.80757 -15.42086 -15.33189 -14.60731 -14.47008 -14.03274 -13.84168 -13.81801 -13.54204 -13.47543 -13.21887 -13.05997 -12.96448 -12.78630 -12.72269 -12.51533 -12.39203 -12.36121 -12.20269 -11.97592 -11.62676 -11.49189 -11.09815 -10.60392 -10.51598 -10.07437 -8.93834 -8.10281 -6.24924 -0.50982 -0.26160 0.27719 1.45758 1.47828 1.55153 2.06454 2.20407 2.32968 2.39145 2.48459 2.82459 3.18826 3.48310 3.63087 3.74856 4.08558 4.13939 4.34626 4.40392 4.41551 4.42435 4.51710 4.57045 4.64895 4.74050 4.75838 4.93289 4.96056 5.06832 5.13137 5.17765 5.28941 5.61327 5.75924 6.04409 6.13278 6.13806 6.38560 6.45836 6.85764 7.44146 8.95209 Molecular weight = 315.10amu Principal moments of inertia in cm(-1) A = 0.010858 B = 0.005939 C = 0.005432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2578.029064 B = 4713.337746 C = 5153.410320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.336 6.336 3 C 0.063 3.937 4 C -0.105 4.105 5 C -0.185 4.185 6 C 0.184 3.816 7 O -0.328 6.328 8 C 0.013 3.987 9 C -0.684 4.684 10 S 2.710 3.290 11 O -0.994 6.994 12 O -0.983 6.983 13 N -1.092 6.092 14 C 0.282 3.718 15 H 0.017 0.983 16 C -0.152 4.152 17 C -0.533 4.533 18 H 0.069 0.931 19 C 0.016 3.984 20 N -0.916 5.916 21 Si 0.962 3.038 22 H -0.270 1.270 23 H -0.287 1.287 24 H -0.269 1.269 25 C -0.045 4.045 26 H 0.119 0.881 27 H 0.065 0.935 28 H 0.074 0.926 29 H 0.179 0.821 30 H 0.178 0.822 31 H 0.121 0.879 32 H 0.081 0.919 33 H 0.071 0.929 34 H 0.417 0.583 35 H 0.072 0.928 36 H 0.026 0.974 37 H 0.040 0.960 38 H 0.265 0.735 39 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.156 4.394 -9.833 17.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.251 6.251 3 C 0.018 3.982 4 C -0.123 4.123 5 C -0.204 4.204 6 C 0.135 3.865 7 O -0.241 6.241 8 C -0.081 4.081 9 C -0.772 4.772 10 S 2.800 3.200 11 O -0.984 6.984 12 O -0.974 6.974 13 N -0.853 5.853 14 C 0.176 3.824 15 H 0.034 0.966 16 C -0.211 4.211 17 C -0.573 4.573 18 H 0.087 0.913 19 C -0.184 4.184 20 N -0.555 5.555 21 Si 0.787 3.213 22 H -0.195 1.195 23 H -0.212 1.212 24 H -0.195 1.195 25 C -0.065 4.065 26 H 0.138 0.862 27 H 0.084 0.916 28 H 0.093 0.907 29 H 0.197 0.803 30 H 0.195 0.805 31 H 0.139 0.861 32 H 0.099 0.901 33 H 0.089 0.911 34 H 0.252 0.748 35 H 0.090 0.910 36 H 0.046 0.954 37 H 0.059 0.941 38 H 0.074 0.926 39 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -12.449 3.677 -10.352 16.603 hybrid contribution -0.826 0.824 1.154 1.641 sum -13.274 4.501 -9.198 16.765 Atomic orbital electron populations 1.23438 0.76057 1.05959 1.02571 1.86093 1.23821 1.25770 1.89369 1.18922 0.91643 0.85898 1.01778 1.21727 1.02051 0.90534 0.98017 1.21535 0.92038 1.00503 1.06316 1.18411 0.92130 0.84323 0.91588 1.86135 1.37745 1.12917 1.87333 1.23536 0.96549 0.84968 1.03013 1.29868 1.26904 0.96976 1.23477 1.01011 0.73853 0.72683 0.72420 1.93507 1.79353 1.38441 1.87091 1.93500 1.83284 1.64531 1.56054 1.55241 1.73810 1.34786 1.21422 1.18216 0.92912 0.91294 0.79945 0.96570 1.22139 0.98442 0.99050 1.01510 1.21538 1.47433 0.93765 0.94539 0.91272 1.25707 0.95116 0.97158 1.00379 1.70019 1.49070 1.15748 1.20672 0.85556 0.78920 0.78951 0.77857 1.19486 1.21228 1.19450 1.20044 0.93563 0.96055 0.96852 0.86243 0.91645 0.90728 0.80341 0.80470 0.86127 0.90057 0.91086 0.74822 0.90965 0.95446 0.94100 0.92626 0.83989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.22 9.81 113.37 1.11 1.33 16 2 O -0.34 -9.34 10.50 -93.33 -0.98 -10.31 16 3 C 0.06 1.97 6.69 22.49 0.15 2.12 16 4 C -0.10 -2.53 9.03 22.35 0.20 -2.33 16 5 C -0.18 -4.72 9.03 22.35 0.20 -4.52 16 6 C 0.18 6.24 6.63 22.49 0.15 6.39 16 7 O -0.33 -10.64 9.29 -84.20 -0.78 -11.42 16 8 C 0.01 0.26 9.81 113.37 1.11 1.37 16 9 C -0.68 -26.81 5.70 22.35 0.13 -26.68 16 10 S 2.71 115.97 5.22 -56.49 -0.29 115.67 16 11 O -0.99 -47.00 16.36 -128.00 -2.09 -49.09 16 12 O -0.98 -43.17 17.31 -122.98 -2.13 -45.30 16 13 N -1.09 -47.81 5.45 -172.53 -0.94 -48.75 16 14 C 0.28 14.31 2.77 44.25 0.12 14.43 16 15 H 0.02 0.91 7.81 -2.39 -0.02 0.89 16 16 C -0.15 -7.70 9.29 71.98 0.67 -7.03 16 17 C -0.53 -27.97 8.76 25.60 0.22 -27.75 16 18 H 0.07 3.47 7.81 -2.91 -0.02 3.44 16 19 C 0.02 0.87 5.30 84.65 0.45 1.31 16 20 N -0.92 -51.26 11.32 21.44 0.24 -51.02 16 21 Si 0.96 41.49 29.54 68.60 2.03 43.52 16 22 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 23 H -0.29 -12.27 7.11 99.48 0.71 -11.57 16 24 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 25 C -0.05 -1.70 9.48 22.35 0.21 -1.49 16 26 H 0.12 1.37 8.14 -2.39 -0.02 1.35 16 27 H 0.06 0.89 7.66 -2.38 -0.02 0.87 16 28 H 0.07 0.84 7.66 -2.39 -0.02 0.82 16 29 H 0.18 2.61 6.29 -2.91 -0.02 2.59 16 30 H 0.18 2.95 6.29 -2.91 -0.02 2.93 16 31 H 0.12 1.97 8.14 -2.39 -0.02 1.95 16 32 H 0.08 1.18 7.66 -2.38 -0.02 1.16 16 33 H 0.07 1.25 7.66 -2.39 -0.02 1.23 16 34 H 0.42 16.57 8.84 -96.75 -0.86 15.72 16 35 H 0.07 3.94 6.07 -2.38 -0.01 3.93 16 36 H 0.03 1.32 7.75 -2.39 -0.02 1.31 16 37 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 38 H 0.26 14.08 8.31 -92.70 -0.77 13.31 16 39 H 0.14 5.49 7.33 -2.91 -0.02 5.47 16 Total: -1.00 -73.28 340.21 0.01 -73.27 By element: Atomic # 1 Polarization: 26.05 SS G_CDS: 0.23 Total: 26.28 kcal Atomic # 6 Polarization: -47.58 SS G_CDS: 4.73 Total: -42.84 kcal Atomic # 7 Polarization: -99.07 SS G_CDS: -0.70 Total: -99.77 kcal Atomic # 8 Polarization: -110.14 SS G_CDS: -5.98 Total: -116.12 kcal Atomic # 14 Polarization: 41.49 SS G_CDS: 2.03 Total: 43.52 kcal Atomic # 16 Polarization: 115.97 SS G_CDS: -0.29 Total: 115.67 kcal Total: -73.28 0.01 -73.27 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351532180.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.474 kcal (2) G-P(sol) polarization free energy of solvation -73.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds