Wall clock time and date at job start Tue Mar 31 2020 11:25:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42906 * 113.99358 * 2 1 4 4 C 1.50702 * 109.46632 * 179.97438 * 3 2 1 5 5 C 1.38294 * 119.94487 * 90.00604 * 4 3 2 6 6 C 1.38118 * 120.05691 * 179.97438 * 5 4 3 7 7 C 1.38752 * 119.94213 * 359.97438 * 6 5 4 8 8 O 1.35904 * 120.05320 * 179.97438 * 7 6 5 9 9 C 1.42902 * 116.99860 * 0.02742 * 8 7 6 10 10 C 1.38711 * 119.89029 * 0.02562 * 7 6 5 11 11 S 1.76204 * 120.02466 * 179.97438 * 10 7 6 12 12 O 1.42105 * 106.39972 * 181.45551 * 11 10 7 13 13 O 1.42098 * 106.40426 * 48.53723 * 11 10 7 14 14 N 1.65595 * 107.21987 * 294.99435 * 11 10 7 15 15 C 1.46508 * 119.99876 * 65.00402 * 14 11 10 16 16 C 1.50701 * 109.47193 * 165.00215 * 15 14 11 17 17 H 1.07998 * 119.99882 * 359.97438 * 16 15 14 18 18 C 1.37873 * 119.99798 * 179.97438 * 16 15 14 19 19 N 1.31511 * 120.00150 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 119.99723 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47254 * 60.00253 * 20 18 16 22 22 H 1.48505 * 109.46837 * 180.02562 * 20 18 16 23 23 H 1.48493 * 109.47142 * 299.99872 * 20 18 16 24 24 C 1.38160 * 119.94354 * 0.24196 * 10 7 6 25 25 H 1.08998 * 109.47437 * 60.00468 * 1 2 3 26 26 H 1.09001 * 109.46234 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47418 * 299.99224 * 1 2 3 28 28 H 1.08993 * 109.47053 * 60.00337 * 3 2 1 29 29 H 1.09001 * 109.47188 * 299.99691 * 3 2 1 30 30 H 1.08006 * 119.96773 * 359.97233 * 5 4 3 31 31 H 1.08000 * 120.02669 * 179.97438 * 6 5 4 32 32 H 1.09001 * 109.47102 * 299.99713 * 9 8 7 33 33 H 1.09001 * 109.47097 * 60.00135 * 9 8 7 34 34 H 1.09007 * 109.46738 * 179.97438 * 9 8 7 35 35 H 0.96997 * 120.00034 * 245.00430 * 14 11 10 36 36 H 1.09006 * 109.46715 * 285.00199 * 15 14 11 37 37 H 1.08993 * 109.46869 * 44.99478 * 15 14 11 38 38 H 0.97005 * 120.00292 * 180.02562 * 19 18 16 39 39 H 1.07998 * 119.96919 * 179.74521 * 24 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3056 0.0000 4 6 3.5124 1.1866 0.0006 5 6 4.2011 1.1320 -1.1974 6 6 5.5780 1.0236 -1.1995 7 6 6.2703 0.9699 0.0018 8 8 7.6251 0.8626 0.0023 9 6 8.2723 0.8108 -1.2707 10 6 5.5773 1.0248 1.2021 11 16 6.4528 0.9562 2.7296 12 8 5.4717 0.9991 3.7567 13 8 7.5125 1.8974 2.6274 14 7 7.1614 -0.5376 2.8219 15 6 8.2060 -0.9132 1.8657 16 6 8.9334 -2.1330 2.3698 17 1 8.6466 -2.5832 3.3086 18 6 9.9650 -2.6742 1.6323 19 7 10.3145 -2.1257 0.4893 20 14 10.8670 -4.1858 2.2575 21 1 9.9066 -5.3083 2.4084 22 1 11.9258 -4.5665 1.2882 23 1 11.4863 -3.8839 3.5729 24 6 4.1995 1.1277 1.1988 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3632 -1.0277 -0.0005 27 1 -0.3634 0.5137 0.8900 28 1 1.6885 1.8464 0.8900 29 1 1.6885 1.8465 -0.8900 30 1 3.6617 1.1743 -2.1322 31 1 6.1153 0.9806 -2.1354 32 1 7.9103 -0.0536 -1.8274 33 1 8.0508 1.7208 -1.8282 34 1 9.3496 0.7260 -1.1274 35 1 6.8849 -1.1640 3.5090 36 1 7.7518 -1.1342 0.8998 37 1 8.9110 -0.0893 1.7557 38 1 11.0401 -2.5067 -0.0297 39 1 3.6592 1.1664 2.1331 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352064393.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:25:43 Heat of formation + Delta-G solvation = -128.404115 kcal Electronic energy + Delta-G solvation = -24940.963747 eV Core-core repulsion = 21169.565247 eV Total energy + Delta-G solvation = -3771.398500 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.102 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.15230 -38.36142 -37.03262 -36.40229 -35.15446 -34.46647 -32.06914 -31.58206 -31.12187 -27.73247 -26.73413 -26.63104 -25.01370 -23.23538 -22.37245 -21.47996 -18.85642 -18.19201 -17.38876 -16.65735 -16.54498 -16.47492 -15.84850 -15.62734 -15.42812 -15.22885 -15.03636 -14.48291 -14.30251 -13.82478 -13.51505 -13.30624 -12.69422 -12.46318 -12.39084 -12.15580 -11.96314 -11.72757 -11.70357 -11.51873 -11.38474 -11.30248 -11.26340 -10.89488 -10.80768 -10.71484 -10.28864 -10.02703 -9.86496 -9.33576 -9.26792 -8.81123 -8.23074 -8.05316 -6.12405 -4.14472 0.92584 1.22002 1.35049 3.29837 3.30280 3.33479 3.36746 3.45918 3.85608 4.00874 4.32280 4.39197 4.68282 4.71908 4.92769 5.02929 5.05275 5.13141 5.18656 5.24720 5.27165 5.38155 5.46845 5.51847 5.58092 5.65829 5.84676 6.04290 6.06013 6.21976 6.41259 6.63414 6.72219 6.96986 7.43676 7.45734 7.53914 7.88414 7.96177 8.29862 8.89764 9.48878 10.97809 Molecular weight = 315.10amu Principal moments of inertia in cm(-1) A = 0.015142 B = 0.004261 C = 0.004172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1848.675628 B = 6569.806539 C = 6710.491976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.385 6.385 3 C 0.110 3.890 4 C -0.165 4.165 5 C -0.010 4.010 6 C -0.234 4.234 7 C 0.240 3.760 8 O -0.284 6.284 9 C 0.033 3.967 10 C -0.710 4.710 11 S 2.698 3.302 12 O -0.986 6.986 13 O -0.954 6.954 14 N -1.103 6.103 15 C 0.253 3.747 16 C -0.528 4.528 17 H 0.063 0.937 18 C 0.063 3.937 19 N -0.891 5.891 20 Si 0.900 3.100 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.276 1.276 24 C 0.036 3.964 25 H 0.039 0.961 26 H 0.086 0.914 27 H 0.042 0.958 28 H 0.059 0.941 29 H 0.057 0.943 30 H 0.128 0.872 31 H 0.138 0.862 32 H 0.060 0.940 33 H 0.050 0.950 34 H 0.116 0.884 35 H 0.409 0.591 36 H 0.024 0.976 37 H 0.045 0.955 38 H 0.263 0.737 39 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.480 6.882 -6.311 17.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.304 6.304 3 C 0.034 3.966 4 C -0.166 4.166 5 C -0.028 4.028 6 C -0.253 4.253 7 C 0.191 3.809 8 O -0.194 6.194 9 C -0.061 4.061 10 C -0.796 4.796 11 S 2.785 3.215 12 O -0.976 6.976 13 O -0.944 6.944 14 N -0.865 5.865 15 C 0.131 3.869 16 C -0.568 4.568 17 H 0.081 0.919 18 C -0.140 4.140 19 N -0.529 5.529 20 Si 0.728 3.272 21 H -0.202 1.202 22 H -0.212 1.212 23 H -0.201 1.201 24 C 0.016 3.984 25 H 0.058 0.942 26 H 0.104 0.896 27 H 0.060 0.940 28 H 0.078 0.922 29 H 0.075 0.925 30 H 0.146 0.854 31 H 0.156 0.844 32 H 0.079 0.921 33 H 0.068 0.932 34 H 0.134 0.866 35 H 0.243 0.757 36 H 0.042 0.958 37 H 0.063 0.937 38 H 0.073 0.927 39 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -13.960 7.494 -5.887 16.902 hybrid contribution -0.088 -1.256 -0.606 1.397 sum -14.048 6.238 -6.493 16.686 Atomic orbital electron populations 1.22750 0.81214 1.02835 0.99851 1.88026 1.19403 1.27648 1.95358 1.21242 0.89502 0.84985 1.00835 1.19448 0.94152 1.09526 0.93469 1.21002 0.93375 0.90905 0.97516 1.21308 0.95351 1.11248 0.97409 1.18527 0.83669 0.85994 0.92737 1.86453 1.14933 1.84847 1.33141 1.23163 0.99652 1.00334 0.82953 1.30398 1.05497 1.24177 1.19504 1.01623 0.73077 0.73937 0.72847 1.93500 1.62064 1.87208 1.54871 1.93568 1.54008 1.60568 1.86290 1.55439 1.51953 1.34618 1.44490 1.19146 0.84537 0.96782 0.86479 1.21276 1.16892 1.11749 1.06866 0.91891 1.24900 0.96727 0.97460 0.94891 1.69914 1.29253 1.40537 1.13218 0.86529 0.79267 0.82739 0.78675 1.20226 1.21223 1.20115 1.20632 0.90969 0.88046 0.98713 0.94218 0.89595 0.93978 0.92243 0.92518 0.85368 0.84446 0.92118 0.93158 0.86622 0.75734 0.95829 0.93741 0.92733 0.83650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 101.05 1.11 1.36 16 2 O -0.39 -4.81 10.69 -35.23 -0.38 -5.19 16 3 C 0.11 1.22 6.06 36.01 0.22 1.44 16 4 C -0.16 -2.28 5.51 -104.60 -0.58 -2.86 16 5 C -0.01 -0.12 9.69 -39.60 -0.38 -0.51 16 6 C -0.23 -3.40 9.04 -39.44 -0.36 -3.76 16 7 C 0.24 4.33 6.31 -39.22 -0.25 4.08 16 8 O -0.28 -5.53 5.56 -29.12 -0.16 -5.69 16 9 C 0.03 0.51 9.81 101.05 0.99 1.50 16 10 C -0.71 -13.05 5.90 -39.44 -0.23 -13.28 16 11 S 2.70 55.15 5.46 -107.50 -0.59 54.56 16 12 O -0.99 -20.29 16.97 -57.17 -0.97 -21.26 16 13 O -0.95 -22.21 16.77 -62.48 -1.05 -23.26 16 14 N -1.10 -23.96 5.99 -11.65 -0.07 -24.03 16 15 C 0.25 6.41 4.26 -5.19 -0.02 6.39 16 16 C -0.53 -14.33 9.27 -34.44 -0.32 -14.65 16 17 H 0.06 1.64 7.65 -52.49 -0.40 1.24 16 18 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 19 N -0.89 -24.51 13.29 55.43 0.74 -23.77 16 20 Si 0.90 20.84 29.54 -169.99 -5.02 15.82 16 21 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 22 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 23 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 24 C 0.04 0.57 9.20 -39.61 -0.36 0.20 16 25 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 26 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.06 0.57 8.08 -51.93 -0.42 0.15 16 29 H 0.06 0.49 8.09 -51.93 -0.42 0.07 16 30 H 0.13 1.25 8.06 -52.48 -0.42 0.82 16 31 H 0.14 1.63 6.30 -52.49 -0.33 1.30 16 32 H 0.06 0.87 7.66 -51.93 -0.40 0.47 16 33 H 0.05 0.60 7.66 -51.93 -0.40 0.21 16 34 H 0.12 1.85 8.14 -51.92 -0.42 1.43 16 35 H 0.41 8.11 8.54 -34.47 -0.29 7.81 16 36 H 0.02 0.61 6.65 -51.93 -0.35 0.27 16 37 H 0.04 1.22 7.13 -51.93 -0.37 0.85 16 38 H 0.26 6.85 8.31 -40.82 -0.34 6.52 16 39 H 0.15 2.13 7.33 -52.49 -0.38 1.74 16 LS Contribution 341.14 15.07 5.14 5.14 Total: -1.00 -33.70 341.14 -7.65 -41.35 By element: Atomic # 1 Polarization: 9.82 SS G_CDS: -5.01 Total: 4.81 kcal Atomic # 6 Polarization: -18.19 SS G_CDS: -0.28 Total: -18.47 kcal Atomic # 7 Polarization: -48.47 SS G_CDS: 0.67 Total: -47.81 kcal Atomic # 8 Polarization: -52.85 SS G_CDS: -2.56 Total: -55.40 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Atomic # 16 Polarization: 55.15 SS G_CDS: -0.59 Total: 54.56 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -33.70 -7.65 -41.35 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352064393.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.058 kcal (2) G-P(sol) polarization free energy of solvation -33.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds