Wall clock time and date at job start Tue Mar 31 2020 11:25:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42906 * 113.99358 * 2 1 4 4 C 1.50702 * 109.46632 * 179.97438 * 3 2 1 5 5 C 1.38294 * 119.94487 * 90.00604 * 4 3 2 6 6 C 1.38118 * 120.05691 * 179.97438 * 5 4 3 7 7 C 1.38752 * 119.94213 * 359.97438 * 6 5 4 8 8 O 1.35904 * 120.05320 * 179.97438 * 7 6 5 9 9 C 1.42902 * 116.99860 * 0.02742 * 8 7 6 10 10 C 1.38711 * 119.89029 * 0.02562 * 7 6 5 11 11 S 1.76204 * 120.02466 * 179.97438 * 10 7 6 12 12 O 1.42105 * 106.39972 * 181.45551 * 11 10 7 13 13 O 1.42098 * 106.40426 * 48.53723 * 11 10 7 14 14 N 1.65595 * 107.21987 * 294.99435 * 11 10 7 15 15 C 1.46508 * 119.99876 * 65.00402 * 14 11 10 16 16 C 1.50701 * 109.47193 * 165.00215 * 15 14 11 17 17 H 1.07998 * 119.99882 * 359.97438 * 16 15 14 18 18 C 1.37873 * 119.99798 * 179.97438 * 16 15 14 19 19 N 1.31511 * 120.00150 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 119.99723 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47254 * 60.00253 * 20 18 16 22 22 H 1.48505 * 109.46837 * 180.02562 * 20 18 16 23 23 H 1.48493 * 109.47142 * 299.99872 * 20 18 16 24 24 C 1.38160 * 119.94354 * 0.24196 * 10 7 6 25 25 H 1.08998 * 109.47437 * 60.00468 * 1 2 3 26 26 H 1.09001 * 109.46234 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47418 * 299.99224 * 1 2 3 28 28 H 1.08993 * 109.47053 * 60.00337 * 3 2 1 29 29 H 1.09001 * 109.47188 * 299.99691 * 3 2 1 30 30 H 1.08006 * 119.96773 * 359.97233 * 5 4 3 31 31 H 1.08000 * 120.02669 * 179.97438 * 6 5 4 32 32 H 1.09001 * 109.47102 * 299.99713 * 9 8 7 33 33 H 1.09001 * 109.47097 * 60.00135 * 9 8 7 34 34 H 1.09007 * 109.46738 * 179.97438 * 9 8 7 35 35 H 0.96997 * 120.00034 * 245.00430 * 14 11 10 36 36 H 1.09006 * 109.46715 * 285.00199 * 15 14 11 37 37 H 1.08993 * 109.46869 * 44.99478 * 15 14 11 38 38 H 0.97005 * 120.00292 * 180.02562 * 19 18 16 39 39 H 1.07998 * 119.96919 * 179.74521 * 24 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3056 0.0000 4 6 3.5124 1.1866 0.0006 5 6 4.2011 1.1320 -1.1974 6 6 5.5780 1.0236 -1.1995 7 6 6.2703 0.9699 0.0018 8 8 7.6251 0.8626 0.0023 9 6 8.2723 0.8108 -1.2707 10 6 5.5773 1.0248 1.2021 11 16 6.4528 0.9562 2.7296 12 8 5.4717 0.9991 3.7567 13 8 7.5125 1.8974 2.6274 14 7 7.1614 -0.5376 2.8219 15 6 8.2060 -0.9132 1.8657 16 6 8.9334 -2.1330 2.3698 17 1 8.6466 -2.5832 3.3086 18 6 9.9650 -2.6742 1.6323 19 7 10.3145 -2.1257 0.4893 20 14 10.8670 -4.1858 2.2575 21 1 9.9066 -5.3083 2.4084 22 1 11.9258 -4.5665 1.2882 23 1 11.4863 -3.8839 3.5729 24 6 4.1995 1.1277 1.1988 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3632 -1.0277 -0.0005 27 1 -0.3634 0.5137 0.8900 28 1 1.6885 1.8464 0.8900 29 1 1.6885 1.8465 -0.8900 30 1 3.6617 1.1743 -2.1322 31 1 6.1153 0.9806 -2.1354 32 1 7.9103 -0.0536 -1.8274 33 1 8.0508 1.7208 -1.8282 34 1 9.3496 0.7260 -1.1274 35 1 6.8849 -1.1640 3.5090 36 1 7.7518 -1.1342 0.8998 37 1 8.9110 -0.0893 1.7557 38 1 11.0401 -2.5067 -0.0297 39 1 3.6592 1.1664 2.1331 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352064393.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:25:42 Heat of formation + Delta-G solvation = -154.235113 kcal Electronic energy + Delta-G solvation = -24942.083863 eV Core-core repulsion = 21169.565247 eV Total energy + Delta-G solvation = -3772.518616 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.102 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.36762 -39.38805 -38.26036 -37.88511 -36.87823 -36.37787 -34.06833 -32.74497 -32.21738 -28.81349 -28.64238 -27.60668 -25.91184 -24.56589 -24.28722 -22.62639 -20.43925 -19.60411 -19.09067 -18.05519 -17.70660 -17.59843 -17.31600 -17.13154 -16.72348 -16.41225 -16.22944 -16.18713 -15.47083 -15.17684 -14.92733 -14.47051 -14.37459 -13.99294 -13.78075 -13.55499 -13.34878 -13.17176 -13.12427 -13.05122 -12.73588 -12.69936 -12.53812 -12.50208 -12.31926 -12.04694 -11.90198 -11.62049 -11.30534 -10.79717 -10.61422 -10.47488 -10.02284 -9.39820 -8.18169 -6.28717 -0.49128 -0.18742 0.18685 1.45544 1.47804 1.54935 2.08369 2.22753 2.35053 2.46472 2.75025 3.11117 3.15260 3.43635 3.73073 3.84051 3.95057 4.13012 4.23836 4.29998 4.42113 4.42580 4.51203 4.59457 4.61905 4.74849 4.77871 4.83938 4.88712 4.91593 5.07867 5.33137 5.40333 5.47410 5.60979 5.83035 6.05986 6.21273 6.25627 6.37856 6.83499 7.38386 8.91774 Molecular weight = 315.10amu Principal moments of inertia in cm(-1) A = 0.015142 B = 0.004261 C = 0.004172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1848.675628 B = 6569.806539 C = 6710.491976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.417 6.417 3 C 0.109 3.891 4 C -0.161 4.161 5 C 0.002 3.998 6 C -0.232 4.232 7 C 0.213 3.787 8 O -0.320 6.320 9 C 0.028 3.972 10 C -0.727 4.727 11 S 2.710 3.290 12 O -0.992 6.992 13 O -0.991 6.991 14 N -1.107 6.107 15 C 0.273 3.727 16 C -0.558 4.558 17 H 0.067 0.933 18 C 0.016 3.984 19 N -0.912 5.912 20 Si 0.966 3.034 21 H -0.269 1.269 22 H -0.280 1.280 23 H -0.273 1.273 24 C 0.021 3.979 25 H 0.059 0.941 26 H 0.091 0.909 27 H 0.051 0.949 28 H 0.070 0.930 29 H 0.088 0.912 30 H 0.172 0.828 31 H 0.165 0.835 32 H 0.068 0.932 33 H 0.086 0.914 34 H 0.098 0.902 35 H 0.415 0.585 36 H 0.016 0.984 37 H 0.015 0.985 38 H 0.267 0.733 39 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.433 6.524 -7.925 19.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.337 6.337 3 C 0.033 3.967 4 C -0.162 4.162 5 C -0.016 4.016 6 C -0.251 4.251 7 C 0.164 3.836 8 O -0.232 6.232 9 C -0.066 4.066 10 C -0.817 4.817 11 S 2.802 3.198 12 O -0.982 6.982 13 O -0.981 6.981 14 N -0.869 5.869 15 C 0.149 3.851 16 C -0.598 4.598 17 H 0.085 0.915 18 C -0.185 4.185 19 N -0.551 5.551 20 Si 0.791 3.209 21 H -0.194 1.194 22 H -0.205 1.205 23 H -0.198 1.198 24 C 0.002 3.998 25 H 0.077 0.923 26 H 0.109 0.891 27 H 0.069 0.931 28 H 0.089 0.911 29 H 0.106 0.894 30 H 0.189 0.811 31 H 0.183 0.817 32 H 0.086 0.914 33 H 0.104 0.896 34 H 0.116 0.884 35 H 0.250 0.750 36 H 0.034 0.966 37 H 0.033 0.967 38 H 0.076 0.924 39 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -15.908 7.134 -7.450 18.959 hybrid contribution 0.382 -1.089 -0.186 1.169 sum -15.526 6.044 -7.637 18.328 Atomic orbital electron populations 1.22945 0.79232 1.03728 1.01255 1.87963 1.21623 1.28400 1.95677 1.21365 0.87344 0.85013 1.02991 1.19872 0.96062 1.07475 0.92832 1.21533 0.92806 0.88304 0.98984 1.21665 0.96253 1.10078 0.97075 1.18829 0.83358 0.87487 0.93918 1.86386 1.16158 1.85466 1.35195 1.23298 0.98549 1.02465 0.82250 1.29937 1.06435 1.27284 1.18047 1.00906 0.72572 0.72874 0.73483 1.93477 1.61712 1.87062 1.55989 1.93513 1.55883 1.61494 1.87217 1.55317 1.51999 1.35102 1.44434 1.18685 0.84485 0.95153 0.86755 1.21663 1.17924 1.12753 1.07444 0.91535 1.25742 0.97354 1.00328 0.95079 1.70022 1.29498 1.41609 1.13949 0.85493 0.78112 0.79156 0.78133 1.19394 1.20488 1.19848 1.20844 0.90053 0.88656 1.00290 0.92283 0.89091 0.93065 0.91144 0.89385 0.81064 0.81720 0.91376 0.89607 0.88356 0.75033 0.96624 0.96720 0.92391 0.83125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 11.01 113.37 1.25 1.58 16 2 O -0.42 -9.20 10.69 -148.98 -1.59 -10.80 16 3 C 0.11 2.02 6.06 71.24 0.43 2.45 16 4 C -0.16 -4.04 5.51 -19.85 -0.11 -4.15 16 5 C 0.00 0.04 9.69 22.25 0.22 0.25 16 6 C -0.23 -6.22 9.04 22.36 0.20 -6.02 16 7 C 0.21 7.68 6.31 22.51 0.14 7.82 16 8 O -0.32 -12.92 5.56 -83.21 -0.46 -13.38 16 9 C 0.03 0.87 9.81 113.37 1.11 1.99 16 10 C -0.73 -27.07 5.90 22.36 0.13 -26.94 16 11 S 2.71 115.30 5.46 -56.49 -0.31 115.00 16 12 O -0.99 -41.84 16.97 -128.00 -2.17 -44.01 16 13 O -0.99 -48.59 16.77 -122.93 -2.06 -50.65 16 14 N -1.11 -50.21 5.99 -190.77 -1.14 -51.35 16 15 C 0.27 14.42 4.26 85.63 0.36 14.78 16 16 C -0.56 -30.99 9.27 25.60 0.24 -30.76 16 17 H 0.07 3.53 7.65 -2.91 -0.02 3.51 16 18 C 0.02 0.86 5.46 84.65 0.46 1.32 16 19 N -0.91 -50.99 13.29 21.45 0.28 -50.70 16 20 Si 0.97 42.74 29.54 68.60 2.03 44.77 16 21 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 22 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 23 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 24 C 0.02 0.65 9.20 22.25 0.20 0.86 16 25 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 26 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 27 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 28 H 0.07 1.14 8.08 -2.39 -0.02 1.12 16 29 H 0.09 1.09 8.09 -2.39 -0.02 1.07 16 30 H 0.17 2.35 8.06 -2.91 -0.02 2.33 16 31 H 0.17 3.39 6.30 -2.91 -0.02 3.37 16 32 H 0.07 1.95 7.66 -2.39 -0.02 1.93 16 33 H 0.09 1.97 7.66 -2.39 -0.02 1.95 16 34 H 0.10 3.33 8.14 -2.38 -0.02 3.31 16 35 H 0.41 17.14 8.54 -96.75 -0.83 16.32 16 36 H 0.02 0.86 6.65 -2.38 -0.02 0.84 16 37 H 0.01 0.86 7.13 -2.39 -0.02 0.85 16 38 H 0.27 14.00 8.31 -92.70 -0.77 13.23 16 39 H 0.15 4.36 7.33 -2.91 -0.02 4.34 16 Total: -1.00 -74.26 341.14 -0.53 -74.79 By element: Atomic # 1 Polarization: 22.90 SS G_CDS: 0.25 Total: 23.16 kcal Atomic # 6 Polarization: -41.45 SS G_CDS: 4.64 Total: -36.81 kcal Atomic # 7 Polarization: -101.20 SS G_CDS: -0.86 Total: -102.06 kcal Atomic # 8 Polarization: -112.56 SS G_CDS: -6.29 Total: -118.84 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 2.03 Total: 44.77 kcal Atomic # 16 Polarization: 115.30 SS G_CDS: -0.31 Total: 115.00 kcal Total: -74.26 -0.53 -74.79 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352064393.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.447 kcal (2) G-P(sol) polarization free energy of solvation -74.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds